BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31170.1
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944866 jgi|Araly1|944866|scaffold_701095.1 2148 0.0
Ahg932476 jgi|Araly1|932476|scaffold_400464.1 1118 0.0
> Ahg944866 jgi|Araly1|944866|scaffold_701095.1
Length=1279
Score = 2148 bits (1163), Expect = 0.0
Identities = 1238/1275 (97%), Gaps = 2/1275 (0%)
Strand=Plus/Plus
Query 274 ACGAGATTGGAAAGGATGCTTGAGAATCCAAAGTTCGATTTGCACGCTGTTGGCAATCAC 333
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 6 ACGATATTGGAAAGGATGCTTGAGAATCCAAAGTTCGATTTGCACTCTGTTGGCAATCAC 65
Query 334 AACAACGACAACAATTACTATGCCTTCACCCAAGACTTTTATCAAAAGCTCGGGGAAGAA 393
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 66 AACAATGACAACAATTACTATGCCTTCACCCAAGACTTTTATCAAAAGCTCGGGGAGGAA 125
Query 394 GGTACAAACATGTCTGTTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGTCAATG 453
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GGTACAAACATGTCCATTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGTCAATG 185
Query 454 TCTGTCGATAACAGTAGCGTTGGTTCGAGTGATGCTCTTATTGGCCATCCTGGTTTGAAG 513
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 186 TCTGTGGATAACAGTAGCGTTGGTTCTAGTGATGCTCTTATTGGCCATCCCGGTTTGAAG 245
Query 514 CCTATGCGCCATCCCTACTCTCTCTCGGATGGCCAAAGCGTATTTCGGCCAGGAAAAGTT 573
|||||||||||||||||||||||||| | |||||||||||||||||| || || ||||||
Sbjct 246 CCTATGCGCCATCCCTACTCTCTCTCTGTTGGCCAAAGCGTATTTCGCCCTGGGAAAGTT 305
Query 574 ACTCATGCACTTAACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGTATCCAACC 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ACTCATGCACTTAACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGTATCCAACC 365
Query 634 GAGGGACTGGTGAACTATGAAGAGTGGACAATAGATCTGAGGAAACTACATATGGGTCCT 693
|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 366 GAGGGACTGGCAAACTATGAAGAGTGGACAATAGATTTGAGGAAACTTCATATGGGTCCT 425
Query 694 GCTTTTGCTCAAGGGGCTTTTGGAAAGTTATACAGAGGGACTTACAACGGAGAAGATGTA 753
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GCTTTTGCACAAGGTGCTTTTGGAAAGTTATACAGAGGGACTTACAACGGAGAAGATGTA 485
Query 754 GCCATTAAGCTACTCGAGAGGTCAGATAGCAACCCTGAAAAGGCACAAGCCCTCGAACAG 813
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 486 GCGATTAAGCTACTCGAGAGGTCAGACAGCAACCCTGAAAAGGCACAAGCCCTCGAACAG 545
Query 814 CAGTTTCAGCAGGAAGTTTCTATGCTTGCATTTTTGAAGCATCCTAACATCGTTAGGTTT 873
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 546 CAGTTTCAGCAGGAAGTTTCTATGCTTGCTTTTTTGAAGCATCCCAACATCGTTAGGTTT 605
Query 874 ATTGGTGCGTGCATTAAACCGATGGTGTGGTGCATCGTGACTGAATATGCAAAAGGAGGG 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATTGGTGCGTGCATTAAACCGATGGTGTGGTGCATCGTGACTGAATATGCAAAAGGAGGT 665
Query 934 TCTGTCAGACAGTTTC-TGACTAAGAGACAAAACCGAGCTGTGCCTTTGAAGTTAGCTGT 992
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TCTGTCAGACAG-TTCTTGACTAAGAGACAAAACCGAGCTGTGCCTTTGAAGTTAGCTGT 724
Query 993 TATGCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCATGAGCGCAACTTTATACA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TATGCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCATGAGCGCAACTTTATACA 784
Query 1053 CCGGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCCATCAAGATTGCTGA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CCGGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCCATCAAGATTGCTGA 844
Query 1113 TTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTA 1172
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TTTTGGCGTTGCAAGAATCGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTA 904
Query 1173 CAGATGGATGGCACCAGAGATGATCCAGCACAGACCCTACACTCAAAAAGTGGACGTGTA 1232
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 905 CAGATGGATGGCCCCAGAGATGATTCAGCACAGACCCTACACTCAAAAAGTGGACGTGTA 964
Query 1233 TAGTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTCTGTTACCGTTCCAGAACATGAC 1292
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 965 TAGTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTTTGTTACCGTTCCAGAACATGAC 1024
Query 1293 GGCGGTTCAGGCTGCATTTGCAGTGGTGAACAGAGGAGTCCGTCCAACAGTCCCAGCAGA 1352
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1025 GGCGGTTCAGGCTGCATTTGCAGTGGTGAACCGAGGAGTCCGTCCAACGGTCCCAGCAGA 1084
Query 1353 TTGTCTTCCTGTGCTTGGAGAGATCATGACACGTTGCTGGGATGCGGACCCTGAAGTCCG 1412
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTGTCTTCCTGTGCTTGGCGAGATCATGACACGTTGCTGGGATGCGGACCCTGAAGTCCG 1144
Query 1413 TCCTTGTTTTGCAGAGATTGTCAATCTTCTGGAGGCGGCGGAAACTGAGATAATGACGAA 1472
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1145 TCCTTGTTTTGCAGAGATTGTCAATCTTCTCGAGGCGGCGGAAACTGAGATAATGACGAA 1204
Query 1473 TGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAACCAATGACAGTCGACTAATCTGT 1532
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1205 TGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAACCAATGACAATCGACTAATCTGT 1264
Query 1533 TGTgaagaaagagag 1547
|||||||||||||||
Sbjct 1265 TGTGAAGAAAGAGAG 1279
> Ahg932476 jgi|Araly1|932476|scaffold_400464.1
Length=1276
Score = 1118 bits (605), Expect = 0.0
Identities = 1048/1259 (83%), Gaps = 41/1259 (3%)
Strand=Plus/Plus
Query 288 GATGCTTGA-GAATCCAAAGTTCGATTTGCACGCTGTT-GGCA--ATCACAACAACGACA 343
||||||||| | | |||||||| | ||| |||||| || | |||||||||||||||
Sbjct 20 GATGCTTGAGGGA-GCAAAGTTCAACGTGCTTGCTGTTGGGAATCATCACAACAACGACA 78
Query 344 ACAATTACTATGCCTTCACCCAAGACTTTTATCA-AAAGCTCGGGGAA-GAAGGTACAAA 401
||||||||||||| || || || || |||||||| ||| || || |||||| ||||
Sbjct 79 ACAATTACTATGCTTTTACGCAGGAGTTTTATCAGAAA-CT----TAATGAAGGTTCAAA 133
Query 402 CATGTCTGTTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGTCAATGTCTGTCGA 461
|||||| | || ||||||||||| ||||| |||||||| ||||| ||||||||||| ||
Sbjct 134 CATGTCCATGGAGAGTATGCAGACTAGTAACGCTGGAGGATCTGTCTCAATGTCTGTGGA 193
Query 462 TAACAGTAGCGTTGGTTCGAGTGATGCTCTTATTGGCCATCCTGGTTTGAAGCCTATGCG 521
||||||||| |||||||| || ||||||||||||||||| || |||||||||||| ||||
Sbjct 194 TAACAGTAGTGTTGGTTCCAGCGATGCTCTTATTGGCCACCCGGGTTTGAAGCCTGTGCG 253
Query 522 CCATCCCTACTCTCTCTCGGATGGCCAAAGCGTATTTCGGCCAGGAAAAGTTACTCATGC 581
||| ||||| ||||| | ||| |||||||| ||||| || |||| |||||| |||||
Sbjct 254 TCAT---TACTCACTCTCTGTTGGACAAAGCGTGTTTCGCCCGGGAAGAGTTACCCATGC 310
Query 582 ACTT-AACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGTATCCAACCG-AGGGA 639
|| || ||||||||||| || ||||| ||||||||| | ||||||||| | ||||
Sbjct 311 -GTTGAATGATGATGCCTTGGCTCAAGCACTGATGGATACCAGGTATCCAACTGAAGGG- 368
Query 640 CTGGTGAACTATGAAGAGTGGACAATAGATCTGAGGAAACTAC-ATATGGGTCCTGCTTT 698
|||| ||||||||| |||||||| || ||||||||||| || | | ||||||||||| ||
Sbjct 369 CTGGCGAACTATGATGAGTGGACGATTGATCTGAGGAACCT-CAACATGGGTCCTGCCTT 427
Query 699 TGCTCAAGGGGCTTTTGG-AAAGTTATACAGAGGGACTTACAACGGAGAAGATGTAGCCA 757
||||||||||||||| || ||| || |||| |||||||||||| ||||| |||||||| |
Sbjct 428 TGCTCAAGGGGCTTTCGGTAAA-TTGTACAAAGGGACTTACAATGGAGAGGATGTAGCGA 486
Query 758 TTAAGCTACTCGAGAGGTCAGATAGCAACCCTGAAAAGGCACAAG-CCCTCGAACAGCAG 816
| ||| |||| ||| || |||| | || ||| |||||||||| || | | ||||| |||
Sbjct 487 TCAAGATACTGGAGTGGCCAGAGAACAGCCCAGAAAAGGCAC-AGTTCATGGAACAACAG 545
Query 817 TTTCAGCAGGAAGTTTCTATGCTTG-CATTTTTGAAGCATCCTAACATCGTTAGGTTTAT 875
|||||||| || || |||||||||| || ||||||||| || |||||||| ||||| ||
Sbjct 546 TTTCAGCAAGAGGTGTCTATGCTTGCCA-ATTTGAAGCACCCAAACATCGTGAGGTTCAT 604
Query 876 TGGTGCGTGCATTAAACCGATGGTGTGGTGCATCGTGACTGAATATGCAAAAGGAGGGTC 935
|||||||||| || || ||||||||||| || ||||||||||| || |||||||| ||
Sbjct 605 TGGTGCGTGCCGCAAGCCAATGGTGTGGTGTATAGTGACTGAATACGCCAAAGGAGGCTC 664
Query 936 TGTCAGACAGTTTCTGACTAAGAGACAAAACCGAGCTGTGCCTTTGAAGTTAGCTGTTAT 995
||| || ||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct 665 TGTGAGGCAGTTTCTGACAAAGAGACAGAACCGAGCCGTCCCTTTGAAGTTAGCTGTTAA 724
Query 996 GCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCAT-GAGCGCAACTTTATACACC 1054
||||| || |||||||| |||||||||||||| |||||| || |||||||| ||||||
Sbjct 725 ACAGGCTTTAGATGTTGCTAGGGGTATGGCTTATGTCCATGGA-CGCAACTTCATACACA 783
Query 1055 GGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCCATCAAGATTGCTGATT 1114
| ||||| |||||||||||||| ||||| ||||| ||| ||||||||||||||| ||||
Sbjct 784 GAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCCATCAAGATTGCAGATT 843
Query 1115 TTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTACA 1174
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 844 TTGGTGTTGCAAGAATTGAAGTTCAAACTGAAGGAATGACACCAGAAACCGGAACTTACA 903
Query 1175 GATGGATGGCACCAGAGATGATCCAGCACAGACCCTACACTCAAAAAGTGGACGTGTATA 1234
|||||||||| ||||||||||| ||||| ||| |||||| |||||||||||| || ||||
Sbjct 904 GATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAAAAAGTGGATGTCTATA 963
Query 1235 GTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTCTGTTACCGTTCCAGAACATGACGG 1294
|||| || ||||||||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct 964 GTTTCGGGATCGTGCTGTGGGAGTTAATCACAGGACTGTTACCGTTCCAGAACATGACAG 1023
Query 1295 CGGTTCAGGCTGCATTTGCAGTGGTGAACAGAGGAGTCCGTCCAACAGTCCCAG-CAGAT 1353
| || ||||| || ||||| || || ||| ||||||| ||||||||||| ||| | |||
Sbjct 1024 CTGTACAGGCAGCGTTTGCGGTTGTAAACCGAGGAGTGCGTCCAACAGTTCCAAAC-GAT 1082
Query 1354 TGTCTTCCTGTGCTTG-GAGAGATCATGAC-ACGTTGCTGGGATGCGGACCCTGAAGTCC 1411
||||| || ||||| | | || |||||||| | | || |||||||| | || |||||||
Sbjct 1083 TGTCTCCCGGTGCT-GAGTGACATCATGACTA-GATGTTGGGATGCTAATCCAGAAGTCC 1140
Query 1412 GTCCTTGTTTTGCAGAGATTGTCAATCTTCTGGAGGCGGCGGAAACTGAGATAATGACGA 1471
|||| ||||||| ||| |||| || || || || || |||||||| |||||||||||||
Sbjct 1141 GTCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCGGAAACAGAGATAATGACGA 1200
Query 1472 -ATGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAA-CCAATGAC-AGTCGACTAA 1527
| | ||||||||||||||||||||||||| ||| || | || ||||| | | ||||||
Sbjct 1201 CA-GCGAGAAAAGCCCGTTTCAGATGTTGCTTGA-GCCAGCCGATGACGATT-GACTAA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69248065410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5