BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31300.2
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328593 jgi|Araly1|328593|fgenesh1_pm.C_scaffold_7000820 1147 0.0
> Ahg328593 jgi|Araly1|328593|fgenesh1_pm.C_scaffold_7000820
Length=705
Score = 1147 bits (621), Expect = 0.0
Identities = 678/706 (96%), Gaps = 2/706 (0%)
Strand=Plus/Plus
Query 165 ATGGATCTCAATCTCGATGCACCTCACTCCATGGGAACGACCATCATCGGCGTCACTTAC 224
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCTCAATCTCGATGCGCCTCACTCCATGGGAACGACCATCATCGGCGTCACTTAC 60
Query 225 AATGGAGGTGTCGTCCTCGGAGCCGACTCACGTACCAGCACCGGTATGTACGTAGCGAAT 284
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 61 AATGGAGGTGTCGTCCTCGGGGCCGACTCGCGTACCAGCACCGGGATGTACGTAGCGAAT 120
Query 285 CGAGCTTCTGATAAGATTACACAACTGACAGATAATGTCTACGTCTGCCGCTCTGGATCG 344
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 CGAGCTTCTGATAAGATCACACAACTCACAGACAATGTCTACGTCTGCCGCTCTGGATCG 180
Query 345 GCTGCTGATTCTCAAGTTGTATCTGACTATGTCCGCTACTTCCTTCACCAGCATACAATT 404
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GCTGCTGATTCTCAGGTTGTCTCTGACTACGTCCGCTACTTCCTTCACCAGCATACAATT 240
Query 405 CAGCAT-GGACAACCCGCAACTGTTAAGGTTTCTGCCAACCTTATCAGGATGCTCGCATA 463
|||| | |||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 241 CAGC-TCGGACAACCTGCAACTGTAAAGGTTTCTGCCAACCTTATTAGGATGCTCGCATA 299
Query 464 TAATAACAAGCAGAACATGCTCCAAACTGGTCTCATCGTTGGAGGATGGGATAAATATGA 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TAATAACAAGCAGAACATGCTCCAAACTGGTCTCATCGTTGGAGGATGGGATAAGTATGA 359
Query 524 GGGTGGGAAGATCTACGGGATCCCACTCGGTGGAACTGTAGTCGAGCAACCGTTTGCCAT 583
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGGTGGGAAGATCTACGGGATCCCACTTGGTGGAACTGTAGTCGAGCAACCGTTTGCCAT 419
Query 584 TGGAGGCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAACAT 643
|||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 420 TGGAGGCTCTGGTTCGAGCTATCTTTACGGGTTCTTCGATCAGGCCTGGAAAGAAAACAT 479
Query 644 GACCAAAGAAGAAGCAGAGCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGA 703
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACCAAAGAAGAAGCCGAGCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGA 539
Query 704 TGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAATCAACTCAGAGGGAGTGACGAGAAA 763
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAATCAACTCAGAGGGAGTCACGAGAAA 599
Query 764 CTTTTACCCTGGAGATAAGTTGCAGCTTTGGCACGAAGAATTGGAGCCCCAAAACTCACT 823
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 CTTTTACCCTGGCGATAAGTTGCAGCTTTGGCACGAGGAATTGGAGCCCCAAAACTCACT 659
Query 824 CTTAGACATTCTGAACGCTGCTGGTCCTGAACCAATGGCCATGTGA 869
||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 660 CTTAGACATCCTAAACGCCGCTGGTCCTGAACCAATGGCCATGTGA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5