BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31390.1 Length=2445 Score E Sequences producing significant alignments: (Bits) Value Ahg491603 jgi|Araly1|491603|fgenesh2_kg.7__1036__AT4G31390.1 3620 0.0 > Ahg491603 jgi|Araly1|491603|fgenesh2_kg.7__1036__AT4G31390.1 Length=2322 Score = 3620 bits (1960), Expect = 0.0 Identities = 2087/2150 (97%), Gaps = 1/2150 (0%) Strand=Plus/Plus Query 51 CATGGAGTCAATCCACTGCAATAGTTTACTAAACCCTAATTTCTCCTTAAACCAGCGTCG 110 |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| Sbjct 1 CATGGAGTCAATCCACTGCAATAGTTTAGTAACCCCTAATTTCTCCTTAAATCAGCGTCA 60 Query 111 TCGGAGGATTAATCACGCTGTTCTTAATCGGAGAGATGCTCTTTTGCGATCCCTCAACGC 170 |||||| || |||| |||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 61 TCGGAGAATAAATCGCGCTGTTCTTGATCGGAGAGATGCTCTTTTGCGATCTCTCAACGC 120 Query 171 CGTGGAGTTGCGGCGGAGCAGGACGTTCTCGGCTGTACGGACTTCTAATTTCTCAGTTAC 230 |||||||||||||||||| ||||| | ||||||||||||||| |||||||| |||||||| Sbjct 121 CGTGGAGTTGCGGCGGAGAAGGACCTGCTCGGCTGTACGGACCTCTAATTTTTCAGTTAC 180 Query 231 TGCGGCGGCGACGGATGTTGGTGGTCGGAATTCGACGGATGCATCGGTAATGACAACGGC 290 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 TGCGGCGGCGACGGATGTTGGTGGTCGGAATTCGACGGATGCTTCGGTAATGACAACGGC 240 Query 291 GATGAGCGGGGTGGAGAGAGGTGTGCGAGTAGGGAAATCGAGCTCCGCGCTTGAGCAGCT 350 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 241 GATGAGCGGGGTGGAGAGAGGTATTCGAGTAGGGAAATCGAGCTCCGCGCTTGAGCAGCT 300 Query 351 AGATATTGAGCGAGGCGTTTGCGTTCCATTCCGAAAGTATTCTCCGGAGACTGTGAGGAG 410 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGATATCGAGCGAGGCGTTTGCGTTCCATTCCGAAAGTATTCTCCGGAGACTGTGAGGAG 360 Query 411 TAAAGTGCTGGAATCAAGAGGAGCAGTCGTGTCTCTAGTTTCAAGGGGTGTGGAGATTGT 470 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 361 TAAAGTGCTGGAATCAAGAGGAGCAGTCGTCTCTCTTGTTTCAAGGGGTGTGGAGATTGT 420 Query 471 TTGGACTCTTGGGTTGTATTGGTCTACCTTAACGTATGATTTTTTGGTTGGAAGGGATGA 530 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 421 TTGGACTCTTGGGTTGTATTGGTCTACCTTAATGTATGATTTTTTGGTTGGAAGGGACGA 480 Query 531 GGAAGTTGTCCCCTTTCGTGCTAGGCAGCTTAGGAACCTGTTGTGCAATTTGGGACCTTC 590 |||||||||||||||||||||| | |||||||||||||| |||||||| ||||| ||||| Sbjct 481 GGAAGTTGTCCCCTTTCGTGCTCGCCAGCTTAGGAACCTTTTGTGCAACTTGGGGCCTTC 540 Query 591 ATTTATCAAAGCTGGACAAGTTCTCGCAAATAGGCCTGATATCATCCGTGAAGACTACAT 650 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 541 ATTTATCAAAGCTGGACAAGTTCTGGCAAATAGGCCTGATATCATCCGTGAAGACTACAT 600 Query 651 GAACGAGCTCTGCATACTCCAAGATGATGTTCCTCCATTCCCAAACGAGGTTGCTTTCAA 710 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 601 GAACGAGCTCTGCATTCTCCAAGATGATGTTCCTCCATTCCCCAACGAGGTTGCTTTCAA 660 Query 711 TATCATCGAGGAAGAGTTAGGCCAACCTCTTGAGAACATATTTAGCAAGATTTCTTCACA 770 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 661 TATCATCGAGGAAGAGTTAGGCCAACCTCTTGAGGCCATATTTAGCAAGATTTCTTCAGA 720 Query 771 AACAATAGCAGCTGCAAGCTTAGGACAAGTTTATCGAGCTACTCTACGTGCCACTGGAGA 830 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 721 AACAATAGCAGCTGCAAGCTTGGGACAAGTTTATCGAGCTACTCTACGTGCCACTGGAGA 780 Query 831 GGATGTTGCTATCAAGGTGCAGAGACCACAAATAGAGCCTATAATTTACCGGGATCTCTT 890 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 781 GGATGTTGCTATCAAGGTGCAGAGACCACAAATAGAGCCCATAATTTACCGGGATCTCTT 840 Query 891 TCTTTTCCGAACCCTCGCCTCCTTCTTAAATGGCTTCAGTCTACAGAAACTGGGTTGCAA 950 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 841 TCTTTTCCGAACCCTCGCCTCATTCTTAAATGGCTTCAGTTTACAGAAACTGGGTTGCAA 900 Query 951 CGCAGAGCTAATAGTTGATGAATTTGGAGAAAAGCTTTTGGAGGAGCTTGACTACACCTT 1010 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 901 CGCAGAGCTAATAGTTGATGAATTTGGAGAAAAGCTTCTGGAGGAGCTTGACTACACCTT 960 Query 1011 GGAAGCCAGAAACATTGAAGACTTTCTGGAGAACTTCAAAGATGACCCCACAGTCAAAAT 1070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGAAGCCAGAAACATTGAAGACTTTCTGGAGAACTTCAAAGATGACCCCACAGTCAAAAT 1020 Query 1071 TCCTGGAGTATACAAGAATCTTTGTGGTCCGCGGGTTCTGGTAATGGAGTGGATTGATGG 1130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TCCTGGAGTATACAAGAATCTTTGTGGTCCGCGGGTTCTGGTAATGGAGTGGATTGATGG 1080 Query 1131 TATTCGGTGCACTGACCCACAGGCCATCAAGGATGCAGGGATTGATTTAAATGGATTCTT 1190 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1081 TATTCGGTGCACTGACCCACAGGCCATCAAGGATGCGGGGATTGATTTAAATGGATTCTT 1140 Query 1191 GACTGTTGGCGTAAGTGCTGCTCTAAGGCAGCTGTTGGAATTTGGATTGTTCCATGGAGA 1250 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1141 GACTGTTGGCGTAAGTGCTGCTTTAAGGCAGCTGTTAGAATTTGGATTGTTCCATGGAGA 1200 Query 1251 TCCACATCCTGGAAATATCTTTGCAATGCAAGATGGGCGTATCGCTTATGTGGACTTCGG 1310 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1201 TCCACATCCTGGAAATATCTTTGCAATGCAAGATGGGCGTATTGCTTATGTGGACTTCGG 1260 Query 1311 TAATGTTGCTGTACTGAGTCAGCAAAACAAGCAAATTTTGATTGATGCTGTTGTTCATGC 1370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TAATGTTGCTGTACTGAGTCAGCAAAACAAGCAAATTTTGATTGATGCTGTTGTTCATGC 1320 Query 1371 GGTTAATGAGGACTATGGGGAGATGGCAAATGATTTCACTAGGCTTGGGTTCTTGGCCAA 1430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GGTTAATGAGGACTATGGGGAGATGGCAAATGATTTCACTAGGCTTGGGTTCTTGGCCAA 1380 Query 1431 GGATACCGATGTTTCTCCTATCGTTCCAGCTTTAGAAGCCATCTGGCAGAACTCTGCAGG 1490 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 GGATACTGATGTTTCTCCTATCGTTCCAGCTTTAGAAGCCATCTGGCAGAACTCTGCAGG 1440 Query 1491 GAAAGGACTTGCAGATTTCAATTTCCGAAGTGTTACAGGACAATTCAACAAGCTTGTGTA 1550 ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 1441 GAAAGGACTTGCAGATTTCAATTTCCGTAGTGTTACAGGCCAATTTAACAAGCTTGTGTA 1500 Query 1551 CGACTTTCCCATCCGTATCCCAGAGCGGTTCTCTCTTGTTATTCGTTCTCTGCTTACGCA 1610 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1501 CGACTTTCCCATCCGTATCCCGGAGCGGTTCTCTCTTGTTATTCGTTCTCTGCTTACTCA 1560 Query 1611 GGAGGGTATATGTTTCACACTGAAGCCTGATTTTAAATTTCTAGAGGTTGCTTATCCATA 1670 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1561 GGAGGGTATATGTTTCACGCTGAAGCCTGATTTTAAATTTCTAGAGGTTGCTTATCCATA 1620 Query 1671 TGTAGCAAAACGGCTCCTAACGGATCCAAATCCTGCACTTCGGGAACGCTTGATACAGGT 1730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 TGTAGCAAAACGGCTCCTAACGGATCCAAATCCTGCACTTCGGGAACGCTTGATACAGGT 1680 Query 1731 TCTATTCAAAGATGGTGTTTTCCAATGGAAAAGGCTAGAAAACCTTTTATCACTTGCAAA 1790 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1681 TCTATTCAAAGATGGTGTTTTCCAATGGAAAAGGCTGGAAAACCTTTTATCACTTGCAAA 1740 Query 1791 GGAAAACGTCGCCAAGATGAGTAGCAATCCTAATCTACGAGTAAAGCGTGTGGAGAGTAA 1850 ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1741 GGAAAACGTTGCCAAAATGAGTAGCAATCCTAATCTACGAGTTAAGCGTGTGGAGAGTAA 1800 Query 1851 GCTTGACTTGACAGATACCATTAAGGACGGAGCTCGTCTTTTCCTCCTTGACGAAGGCAT 1910 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1801 GCTTGACTTGACAGATACCATTAAGGACGGAGCTCGTCTTTTCCTCCTTGACGAAGGCAT 1860 Query 1911 CCGCAGGAAACTTATTCTTGCACTCACAGAGGACTCGAAGCTTCATGTAGAAGAGCTTGT 1970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1861 CCGCAGGAAACTTATTCTTGCACTCACAGAGGACTCGAAGCTTCATGTAGAAGAGCTTGT 1920 Query 1971 GGACGTATACAGATTGGTTGAAGACGAAGTAGATATTCCCACACTGGCCATGCAAGTCGT 2030 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1921 GGACGTATACAGATTGGTAGAAGACGAAGTAGATATTCCCACACTGGCCATGGAAGTCGT 1980 Query 2031 GCAAGATTTACCGAATGTTTTCCGAGATTTTGTGTTGTCATGGAGCAACTCAGTATTATC 2090 || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1981 GCGAGATTTACCGAATGTTTTCCGAGATTTTGTGTTGTCATGGAGCAACTCGGTGTTATC 2040 Query 2091 CGACAGATGATGAATCAGCTTCTCACTTACtttttttGGCTCTTTTTGAAGAGGAAAGAG 2150 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2041 AGACAGATGATGAATCGGCTTCTCACTTACTTTTTTTGGCTCTTTTTGAAGAGGAAAGAG 2100 Query 2151 GTAATATATATTACAGGGAGTAGATGGAGAAGAAAAGCGTAGATTAATAT 2200 |||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2101 GTAA-ATATAGTACAGGGAGTAGATGGAGAAGAAAAGCGTAGATTAATAT 2149 Score = 159 bits (86), Expect = 7e-38 Identities = 106/115 (92%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 2318 TTGGACGTTGTCTACTGTAGTTGGATATCTAAACACATTAATCGACGTCATCAAATCAAA 2377 |||||||||||||| ||||||||||||||| || |||||| | ||||||||||||||||| Sbjct 2210 TTGGACGTTGTCTAATGTAGTTGGATATCT-AA-ACATTAGTGGACGTCATCAAATCAAA 2267 Query 2378 GTTGTAGTGTTCTCACAACACAAC--TGATTCACAATCTGGACTCGAATGAATTG 2430 | |||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2268 GCTGTAATGTTCTCACAACACAACACTGATTCACAATCTGGACTCGAATGAATTG 2322 Score = 76.8 bits (41), Expect = 7e-13 Identities = 46/48 (96%), Gaps = 1/48 (2%) Strand=Plus/Plus Query 2235 TTATACACCAATCCATACATGTAATTATATAAAA-GCACACACAAACT 2281 |||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 2150 TTATACACCAATCCATACATGTAATTATATAAAAAGCGCACACAAACT 2197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92140302655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5