BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31500.1 Length=1745 Score E Sequences producing significant alignments: (Bits) Value Ahg944834 jgi|Araly1|944834|scaffold_701063.1 2678 0.0 > Ahg944834 jgi|Araly1|944834|scaffold_701063.1 Length=1586 Score = 2678 bits (1450), Expect = 0.0 Identities = 1542/1587 (97%), Gaps = 4/1587 (0%) Strand=Plus/Plus Query 22 TAAGTCAAAC--AGaaaaaaaTGGATCTCTTATTGATTATAGCCGGTTTAGTAGCGGCTG 79 |||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||| Sbjct 1 TAAGTCAAACAAAGAAAAAAATGGATCTCTTCTTGATTATAGCCGCTTTGGTAGCGGCTG 60 Query 80 CAGCCTTCTTTTTCCTCCGTAGCACGACCAAGAAATCTCTCCGGTTACCTCCGGGACCAA 139 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 CAGCCTTCTTTTTCCTCCGTAGCACGACCAAGAAATCTCTCCGGCTACCTCCGGGACCAA 120 Query 140 AAGGTCTTCCTATTATAGGAAACCTTCACCAGATGGAGAAATTCAACCCCCAACACTTCC 199 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 121 AAGGTCTTCCTATTATAGGAAACCTTCACCAGATGGAGAAATTCAATCCACAACACTTCC 180 Query 200 TTTTCCGTCTCTCCAAGCTATACGGCCCGATTTTCACGATGAAAATCGGTGGCCGTCGCC 259 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 181 TTTTCCGTCTATCCAAGCTATACGGCCCGATTTTCACGATGAAAATCGGAGGCCGTCGCC 240 Query 260 TCGCGGTGATCTCCTCGGCCGAGCTAGCCAAGGAGCTACTCAAAACTCAAGACCTCAACT 319 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 241 TAGCGGTGATCTCCTCGGCCGAGCTAGCCAAGGAGCTACTCAAGACTCAAGACCTCAACT 300 Query 320 TCACCGCTCGTCCTCTCTTGAAAGGGCAACAAACCATGTCGTATCAAGGCCGTGAGCTTG 379 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 301 TCACCGCTCGTCCTCTCTTGAAAGGTCAACAAACGATGTCGTATCAAGGCCGTGAGCTCG 360 Query 380 GTTTCGGACAGTACACCGCGTACTACCGTGAGATGAGGAAGATGTGTATGGTGAACCTCT 439 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTTCGGACAGTACACCGCCTACTACCGTGAGATGAGGAAGATGTGTATGGTGAACCTCT 420 Query 440 TCAGCCCGAACCGTGTCGCAAGTTTCAGACCGGTTAGAGAAGAAGAGTGTCAACGGATGA 499 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 TCAGCCCAAACCGTGTCGCAAGTTTCAGACCGGTTAGAGAAGAAGAGTGCCAACGGATGA 480 Query 500 TGGACAAGATCTATAAAGCCGCTGATCAATCAGGCACCGTTGATCTAAGTGAGCTTCTCT 559 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 481 TGGACAAGATCTACAAAGCCGCTGATCAATCAGGCACCGTTGATCTAAGTGAGCTCCTCT 540 Query 560 TGTCTTTCACTAACTGTGTCGTATGTAGACAAGCTTTTGGGAAACGGTACAATGAGTACG 619 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TGTCTTTCACCAACTGTGTCGTATGTAGACAAGCTTTTGGGAAACGGTACAATGAGTACG 600 Query 620 GCACAGAGATGAAGAGATTCATAGATATCTTGTACGAGACGCAAGCACTTTTGGGCACTC 679 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 601 GTACAGAGATGAAGAGATTCATAGACATCTTGTACGAGACGCAAGCACTTTTGGGCACTC 660 Query 680 TGTTTTTCTCCGACCT-TTTCCCTTATTTCGGATTCCTTGACAACCTCACTGGTCTCAGT 738 |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||| Sbjct 661 TGTTTTTCTCCGACCTCTTT-CCTTATTTTGGATTCCTTGACAACCTCACTGGTCTTAGT 719 Query 739 GCACGTCTCAAGAAAGCTTTCAAGGAGCTTGACACTTACCTTCAAGAACTTCTAGACGAG 798 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 720 GCGCGTCTCAAGAAAGCTTTTAAGGAGCTTGACACTTACCTTCAAGAACTTCTAGACGAG 779 Query 799 ACTCTTGACCCTAACCGCCCTAAACAAGAAACAGAGAGTTTCATTGATCTTTTGATGCAG 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ACTCTTGACCCTAACCGCCCTAAACAAGAAACAGAGAGTTTCATTGATCTTTTGATGCAG 839 Query 859 ATCTACAAAGACCAACCTTTCTCCATCAAATTCACTCACGAAAATGTCAAGGCCATGATA 918 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 840 ATCTACAAAGACCAACCTTTCTCCATCAAATTTACTCACGAAAATGTCAAGGCCATGATA 899 Query 919 TTGGATATTGTTGTGCCGGGAACTGACACGGCGGCTGCAGTGGTGGTATGGGCCATGACT 978 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 900 TTGGATATTGTTGTGCCGGGAACTGACACGGCGGCTGCGGTGGTGGTATGGGCCATGACT 959 Query 979 TACCTTATTAAGTACCCTGAAGCAATGAAGAAAGCTCAAGACGAAGTGAGGAGTGTGATA 1038 |||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 960 TACCTTATAAAGTACCCTGAAGCGATGAAGAAAGCTCAAGACGAAGTGAGGAATGTGATA 1019 Query 1039 GGTGACAAAGGATATGTCTCTGAAGAAGACATACCTAATCTCCCTTACCTAAAGGCAGTC 1098 || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 1020 GGCGACAAAGGATATGTCTCGGAAGAAGATATACCTAATCTCCCTTACCTCAAGGCAGTC 1079 Query 1099 ATCAAGGAGTCTCTTCGGCTCGAACCAGTCATCCCCATTCTTCTACACAGAGAAACTATC 1158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 ATCAAGGAGTCTCTTCGGCTCGAACCAGTCATCCCCATTCTTCTACACAGAGAAACTATC 1139 Query 1159 GCAGACGCAAAGATAGGTGGCTATGATATTCCGGCCAAGACCATCATTCAGGTGAACGCA 1218 |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1140 GCAGACGCAAAGATCGGTGGCTATGATATCCCGGCCAAGACCATCATTCAGGTGAACGCG 1199 Query 1219 TGGGCGGTTTCTCGTGACACAGCCGCGTGGGGAGACAACCCTAATGAGTTCATTCCAGAG 1278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TGGGCGGTTTCTCGTGACACAGCCGCGTGGGGAGACAACCCTAATGAGTTCATTCCAGAG 1259 Query 1279 AGGTTCATGAACGAGCACAAAGGAGTGGACTTCAAGGGCCAAGATTTTGAGCTCCTACCT 1338 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AGGTTCATGAAGGAGCACAAAGGAGTGGACTTCAAGGGCCAAGATTTTGAGCTCCTACCT 1319 Query 1339 TTCGGGTCGGGCCGGAGAATGTGCCCGGCCATGCATCTTGGGATTGCAATGGTAGAGATA 1398 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1320 TTCGGGTCGGGCCGGAGAATGTGCCCGGCCATGCATCTTGGGATCGCAATGGTAGAGATA 1379 Query 1399 CCTTTCGCTAACCTTCTCTACAAATTTGACTGGAGTCTACCTAAAGGGATTAAACCAGAG 1458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 CCTTTCGCTAACCTTCTCTACAAATTTGACTGGAGTCTACCTAAAGGGATTAAACCAGAG 1439 Query 1459 GATATAAAGATGGACGTCATGACTGGACTCGCTATGCACAAGAAAGAACACCTCGTTCTT 1518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1440 GATATAAAGATGGACGTCATGACTGGACTCGCTATGCACAAGAAAGAACACCTCGTCCTT 1499 Query 1519 GCACCAACGAAACACATCTGATGCTATATATATCATTAGGACGTTTCTGCTGGTAGATAT 1578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 GCACCAACGAAACACATCTGATGCTATATATATCATTAGGACGTTTCTGCTGGTAGATAT 1559 Query 1579 GGCGTGACCAATGGTTATTTTTCATTG 1605 |||||||||||||||| |||||||||| Sbjct 1560 GGCGTGACCAATGGTTGTTTTTCATTG 1586 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65477131155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5