BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31520.1
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328571 jgi|Araly1|328571|fgenesh1_pm.C_scaffold_7000798 2180 0.0
Ahg471469 jgi|Araly1|471469|fgenesh2_kg.1__1423__AT1G13160.1 732 0.0
> Ahg328571 jgi|Araly1|328571|fgenesh1_pm.C_scaffold_7000798
Length=2208
Score = 2180 bits (1180), Expect = 0.0
Identities = 1329/1396 (95%), Gaps = 30/1396 (2%)
Strand=Plus/Plus
Query 720 TGACGAGAGCACTGTGGAAACTAATGACAAGAGCAGTGGGGAAACTGATGACAAGAGCAC 779
|||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 825 TGACAAGAGCAGTGGGGAAACTAATGACAAGAGCAGTGGGGAAACTAATGACAAGAGCAG 884
Query 780 TGGGGAAACTTATGAACGGCGC-GAGACCAGGTTGATGATTATAAAAGTTATTGCACGAA 838
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 885 TGGGGAAACTAATGAACGGC-CTGAGACCAGGTTGATGATTATAAAAGTTATTGCACGAA 943
Query 839 CAATTGGTCTTCACAAGTTGCTTTTATTCAAATTTTATACTTATCTTCAAG-CGTATGCT 897
| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 944 CTATTAGTCTTCACAAGTTGCTTTTATTCAAATTTTATACTTATCTTCAAGAC-TATGCT 1002
Query 898 AAGGATGGTGTAAAGGACATTACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGAT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AAGGATGGTGTAAAGGACATTACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGAT 1062
Query 958 GGGGTACCTTCGGATGCCGTGGAGCCACTGTTCAAGCAAATAGTGAATAAGTTTTTACAC 1017
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1063 GGGGTACCTTCGGATGCCGTGGAGCCACTGTTCAAGAAAATAGTGAATGAGTTTTTACAC 1122
Query 1018 GATCGCTCAAGTCCGGAGGCTATTCCTGTCGCACTCAATGTGGTACGAGAAATGTTCCTT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1123 GATCGCTCAAGTCCGGAGGCTATTCCTGTCGCACTCAATGTGGTACGAGAAATGTGCCTT 1182
Query 1078 AGGATTCCCGAGTTGATGACAGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGAT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AGGATTCCCGAGTTGATGACAGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGAT 1242
Query 1138 AAAAAGTACCGTACCCATAGAAAAGCCATCTCAGCAGCATCTGCTTCCCTCATAGCATTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 AAAAAGTACCGTACCCATAGAAAAGCCATCTCAGCAGCATCTGCTTCCCTCATAGCATTG 1302
Query 1198 TTCAGAGAGATCAACCCTTTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCCC 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1303 TTCAGAGAGATCAACCCTTTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCAC 1362
Query 1258 ATTGCCAGACCTAAAAAGTATGGAGAAGTCAATGTCTTCAGCAATGTTCCCAATGTTGAT 1317
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1363 ATTGCCAGACCTAAAAAGTATGGAGAAATCAATGTCTTCAGTAATGTTCCCAATGTTGAG 1422
Query 1318 TTATTGCAAGAAAGTGATGATGATGAAGTGGCGTTGCCTGGGAGTGATGATATCGAACAG 1377
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1423 TTATTGCAAGAAAGTGATGATGATGAAGTGGCGTTGCCTGGGACTGATGATATCGGACAG 1482
Query 1378 GAGCTGATAACTGAGGACGAGGCTGAAGAAGATTCTAATGATG--G-TG--A-TGAT--- 1428
||||||||||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 1483 GAGCTGATAACTGAGGACGAGGCTGAAGAAGATTCTAATGATGAAGATTCTAATGATGGT 1542
Query 1429 -ATGA-AT--A-A-CACTGAAGAT-GATACTTTGGTTAGTGGAGATGAAGAGGAAGAGAA 1481
|||| || | | ||||||| || ||||||||||| ||||| ||||||||| ||
Sbjct 1543 GATGATATGCATAGCACTGAA-ATTGATACTTTGGTCAGTGGGGATGAAGAG-AA----- 1595
Query 1482 GAATGACAGTGATGAAGCCGAGACTGATTGGGAAAACGAAGAAGATGAAGGAGAAGCTTC 1541
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1596 ---TGACAGTGATGAAGCCGAGACTGATTGGGAAAACGAAGAAGATGATGGAGAAGCTTC 1652
Query 1542 TGTGGAGGGTAGTGGAAACAGAGAGAAAGCAAAGGGGAAGAAAAGGAAGTTAGTAGATTT 1601
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1653 TGTGGAGGGTAGTGGAAACAGAGAGAAAGCAGAGGGGAAGAAAAGGAAGTTAGTAGATTT 1712
Query 1602 TGATGCGAGTCTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATGCGCAGAGGC 1661
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1713 TGATGCGAGTTTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATGCGCAGAAGC 1772
Query 1662 AGAGAGGGAACAGACATCTTTTGCAGAAAGAGATGGCATACTTTCCAATGAGGACTTCCG 1721
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 AAAGAGGGAACAGCCATCTTTTGCAGAAAGAGATGGCATACTTTCCAATGAGGACTTCCA 1832
Query 1722 AAAAATCAAAGAAGTTAAGGGAAAGAAGGATGCGAAACTTGCATTGGCTCGAAAAGGATT 1781
||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1833 AAAAATCAAAGAACTTAAGGCAAAGAAGGATGCGAAAATTGCATTGGCTCGAAAAGGATT 1892
Query 1782 GAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCCAAACTTGAAGC 1841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 CAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCCAAACTTGAAGC 1952
Query 1842 TCACATAAGGCAGAAACTAATAAAAGAAGAAAGGCTGGAGTTAGTTAAAGCGGGTAGGGA 1901
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1953 TCACATAAGGCATAAACTAACAAAAGAAGAAAGGCTGGAGTTAGTTAAAGCGGGTAGGGA 2012
Query 1902 GGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACCGGAGGATCGAG 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 GGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACCGGAGGATCGAG 2072
Query 1962 CAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCAGTAAGATCAAAGGCTGG 2021
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2073 CAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCATTAAGATCAAAGGCTGG 2132
Query 2022 GAAAGCAAAGCGAGTCAAGAAAATGAAGAATAGCCACAGCGGAAGCCAGTTCAGAGGAAG 2081
|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2133 GAAATCAAAGCGAGTCAAGAAAAAGAAGAATAGCCTCAGCGGAAGCCAGTTCAGAGGAAG 2192
Query 2082 GAAAGCTTGGAAGTGA 2097
||||||||||||||||
Sbjct 2193 GAAAGCTTGGAAGTGA 2208
Score = 926 bits (501), Expect = 0.0
Identities = 515/522 (99%), Gaps = 0/522 (0%)
Strand=Plus/Plus
Query 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
Query 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTACCAAGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTATCAAGTT 120
Query 121 GCGCAATCTCTGATTCTTCTTATGAATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGCT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GCGCAATCTCTGATTCTTCTTATGTATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGCT 180
Query 181 CTGTTTCTAGATATTCAAACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTCTCAT 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGTTTCTAGATATTCAGACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTCTCAC 240
Query 241 ATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCCAAGGCACAAATCTCTTCACAAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCCAAGGCACAAATCTCTTCAGAAG 300
Query 301 ATTGTTTTCTCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTTACC 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGTTTTCGCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTTACC 360
Query 361 CTTTGTGAGCTTCACAAGAAAAAAGTCTGGTTTGGTGATAAACATGACAGAGTAGCAATT 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTTGTGAGCTTCACAAGAGAAAAGTCTGGTTTGGTGATAAACATGACAGAGTAGCAATT 420
Query 421 GCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCGGTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCGGTTT 480
Query 481 CTTCTTGACTACGACAACATTAACGATGAGGATGATAGTGAT 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTCTTGACTACGACAACATTAACGATGAGGATGATAGTGAT 522
Score = 409 bits (221), Expect = 5e-113
Identities = 261/279 (94%), Gaps = 7/279 (3%)
Strand=Plus/Plus
Query 517 AGTGATCTCAGGTTGTGTTTAACAGAGAGGCTGTTTACAAGCAAGAAGAAAAAGCAAGCA 576
||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 555 AGT-ATCTCAGGTTGTGTTTAACAGAGAGGCTGTTT---A-CAAGAAGAAAAAGCAAGCA 609
Query 577 AAACTGCAACGCGCCATGCGAAGTATTAAACGAAAGCAGCGTGCGTCGTCTGAGAACACT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 AAACTGCAACGCGCCATGCGAAGTATTAAACGAAAGCAGCGTGCGTCGTCTGAGAACACT 669
Query 637 ACTTCAACTTATTCACCTCTTAATCATCTAAATGATGCACAGAATTTTGCAGAGAGGTTG 696
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 670 ACTTCAACTTATTCACCTCTTAATCATCTAAATGATGCACAGAACTTTGCAAAGAGGTTG 729
Query 697 CTTCCCCTTATTAGGCCTAAGCCTGACGAGAGCACTGTGGAAA-CTAATGACAAGAGCAG 755
||| || ||||||||||||| ||||| |||||| || ||||| ||||||||||||||||
Sbjct 730 CTTTGCCGTATTAGGCCTAAGTCTGACAAGAGCAGTG-GGAAAACTAATGACAAGAGCAG 788
Query 756 TGGGGAAACTGATGACAAGAGCACTGGGGAAACTTATGA 794
|||||||||| |||||||||||| |||||||||| ||||
Sbjct 789 TGGGGAAACTAATGACAAGAGCAGTGGGGAAACTAATGA 827
> Ahg471469 jgi|Araly1|471469|fgenesh2_kg.1__1423__AT1G13160.1
Length=2641
Score = 732 bits (396), Expect = 0.0
Identities = 639/749 (85%), Gaps = 46/749 (6%)
Strand=Plus/Plus
Query 1390 GAGGACGAGGCTGAAGAAGATTCTAATGATGGTGATGATATGAATAACACTGAAGATGAT 1449
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1708 GAGGACGAAGCTGAAGAAGATTCCAATGATGGTGATGATATGAATAACACTGAAGATGAT 1767
Query 1450 A---CT-TTG----GT---TA-GTGGAGATGAAGAGGAAGAGAAGAATGACAGTGATGAA 1497
| | ||| | || |||| |||||||| |||||| ||||||||||||||||
Sbjct 1768 AGTGATATTGATACTTCAATAGGTGGTGATGAAGATGAAGAGGTGAATGACAGTGATGAA 1827
Query 1498 GCCGAGACTGATT-GG-----GA--AAA-CG-AA--GAAGATGA--A-GGAGAAGCTTCT 1542
|| || || |||| || || ||| || || ||||| || | ||||||||||||
Sbjct 1828 GCTGATACAGATTCGGAAAATGAGGAAATCGAAAGCGAAGAAGACGATGGAGAAGCTTCT 1887
Query 1543 G-------TG--GAGGGTAGTGGAAACAGAGAGAAAGCAAAGGGGAAGAAAAGGAAG-TT 1592
| || |||| || |||||||| ||||||||| ||||| ||||| |||||| ||
Sbjct 1888 GATTCTTCTGTAGAGGATAATGGAAACAAAGAGAAAGCTAAGGGCAAGAAGAGGAAGATT 1947
Query 1593 AGTAGATTTTGATGCGAGTCTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATG 1652
|||||||||||||||| ||| ||| |||||||||||||||| |||||||| |||||||
Sbjct 1948 -GTAGATTTTGATGCGAATCTTCTCTCTGCTGATACAAGCCTCCGAGCACTCAAGAGATA 2006
Query 1653 CGCAGAGGCAGAGAGGGAACAGA-CATCTTTTGCA-GAAAGAGATGGCATACTTTCCAAT 1710
||||| ||| ||| ||| | | ||||||||| | ||||| |||||||||||||| |||
Sbjct 2007 TGCAGAAGCAAAGAACGAA-AAACCATCTTTTG-ATGAAAGTGATGGCATACTTTCGAAT 2064
Query 1711 GAGGACTTCCGAAAAATCAAAGAAGTTAAGGGAAAGAAGGATGCGAAACTTGCATTGGCT 1770
|||||||||||||||||||||||| || ||| ||||||||| || ||| |||||||||||
Sbjct 2065 GAGGACTTCCGAAAAATCAAAGAACTTCAGGCAAAGAAGGAAGCAAAAATTGCATTGGCT 2124
Query 1771 CGAAAAGGATTGAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCC 1830
||||||||||| || ||||||||||||||| ||||||| ||||||| |||| ||||||||
Sbjct 2125 CGAAAAGGATTCAAGGTTCCGGATTCTGATCAGCTAAGCAAGAAGCGGGTCGATCCAGCC 2184
Query 1831 AAACTTGAAGCTCACATAAGGCAGAAACTAATAAAAGAAGAAAGGCTGGAGTTAGTTAAA 1890
||||||||||||||||||||||| ||||||| ||||||| |||| ||||| |||||||||
Sbjct 2185 AAACTTGAAGCTCACATAAGGCATAAACTAACAAAAGAACAAAGACTGGAATTAGTTAAA 2244
Query 1891 GCGGGTAGGGAGGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACC 1950
||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 2245 GCGGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGAAGAAGACG 2304
Query 1951 GGAGGATCGAGCAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCAGTAAGA 2010
|||||||| ||||||| ||||||||| |||| ||||||||||||||| |||||| |||||
Sbjct 2305 GGAGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTGCAATAAGA 2364
Query 2011 TCAAAGGCTGGGAAAGCAAAGCGAG-TCAAGAAAATGAAGAATAGCCA-CAGCGGAAGCC 2068
||||||||||||||| |||||||| | ||||| |||||||||||| | |||||||||||
Sbjct 2365 TCAAAGGCTGGGAAATCAAAGCGAACT-AAGAAGATGAAGAATAGC-ATCAGCGGAAGCC 2422
Query 2069 AGTTCAGAGGAAGGAAAGCTTGGAAGTGA 2097
|||| ||||||||||||||||||||||||
Sbjct 2423 AGTTTAGAGGAAGGAAAGCTTGGAAGTGA 2451
Score = 555 bits (300), Expect = 6e-157
Identities = 451/525 (86%), Gaps = 6/525 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
|||||||| ||||| || ||||| ||||| ||||| || ||| | | ||||||||||||
Sbjct 289 ATGTTTCTAGCTCACGTTACTCCCTTTTACCCGAAGCAACTCTCGGAGTTTCCAGCTCAA 348
Query 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTACCAAGTT 120
|||||||| ||||||||||| || ||| | |||||||| ||||| ||||| |||| |||
Sbjct 349 TTGACTGACTTACTCCGTACTTCTTGCTTAGCAATGCCCTCGGGTCTTCGAAACCATGTT 408
Query 121 GCGCAATCTCTGATTCTTCTTATGAATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGCT 180
|| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 409 GCACAAGCTCTGATTCTTCTAATGAATCGAAAGAGTCTTGTCATCGAGGATTTGCTGGCT 468
Query 181 CTGTTTCTAGATATTCAAACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTC-TCA 239
| ||||| |||||||| ||||||||||| |||||| ||||| |||||||| | |||
Sbjct 469 TTATTTCTGGATATTCAGACTCTTGGTGACAAAAACCTGCGAGCTCTTGCTTT-TGGTCA 527
Query 240 TATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCC-AAGGCACAAATCTCTTCACA 298
|||||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||| |
Sbjct 528 CATTGTTCAAACCATTCGTAAGATGAGTATCACTGATCCCAAG-CACAAATCACTTCAGA 586
Query 299 AGATTGTTTTCTCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTTA 358
||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||| ||
Sbjct 587 AGATTGTGATCTCTATGTTAGAGCAAGAAGATGAAGCAAAGGCTAAGAGAGCACTTGCTA 646
Query 359 CCCTTTGTGAGCTTCACAAGAAAAA-AGTCTGGTTTGGTGATAAACATGACAGAGTAGCA 417
| || |||| ||| ||||||||||| | | ||| ||||||||||| |||| ||||| |||
Sbjct 647 CTCTCTGTGCGCTACACAAGAAAAAGA-TATGGCTTGGTGATAAAAATGAAAGAGTTGCA 705
Query 418 ATTGCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCGG 477
||||| ||||||||||||||||||||| ||||||||||||| | ||| ||| | |||||
Sbjct 706 ATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACCTAGGATAATGATCTCTGCTCTTCGA 765
Query 478 TTTCTTCTTGACTACGACAACATTAACGATGAGGATGATAGTGAT 522
|||||||||||||| || |||||| ||||||| || |||||||||
Sbjct 766 TTTCTTCTTGACTATGAGAACATTGACGATGATGACGATAGTGAT 810
Score = 542 bits (293), Expect = 5e-153
Identities = 475/557 (85%), Gaps = 35/557 (6%)
Strand=Plus/Plus
Query 802 GAGACCAGGTTGATGATTATAAAAGTTATTGCACGAACAATTGGTCTTCACAAGTTGCTT 861
||||||||||||||||| || ||||||||||| || |||||||||||||||||||||| |
Sbjct 1090 GAGACCAGGTTGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCAT 1149
Query 862 TTATTCAA-ATTTTATACTTATCTTC-AAGCGTATGCTAAGGATG-GTGTAAAGGACATT 918
|| | || |||||| ||| ||||| || | || ||| | | | |||||||||||||
Sbjct 1150 TTGCT-AAGTTTTTATTCTTTTCTTCAAAAC-TACGCT-ATGCCGCATGTAAAGGACATT 1206
Query 919 ACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGATGGGGTACCTTCGGATGCCGTG 978
|||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct 1207 ACACAAATACTTGCAGCAGCAGTTCAATCTTGCCATGATGGGGTTCCTTCTGATGCTGTG 1266
Query 979 GAGCCACTGTTCAAGCAAATAGTGAATAAGTTTTTACACGATC--GCTCAAGTCCGGAGG 1036
|||||||||||||||||||| |||||| ||||| ||||||| | | ||| |||| ||||
Sbjct 1267 GAGCCACTGTTCAAGCAAATTGTGAATCAGTTTGTACACGA-CAAG-TCACGTCCTGAGG 1324
Query 1037 CTATTCCTGTCGCACTCAATGTGGTACGAGAAATGTTCCTTAGGATTCCCGAGTTGATGA 1096
||||| |||||| ||||||||||||||||||||||| ||| ||||||| ||| |||||||
Sbjct 1325 CTATTGCTGTCGGACTCAATGTGGTACGAGAAATGTGCCTGAGGATTCACGACTTGATGA 1384
Query 1097 CAGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGATAAAAAGTACCGTACCCATA 1156
||||||| |||||||| |||||||||| |||||||| | || || | ||
Sbjct 1385 CAGAAGAGTTGCTGCAAGATCTTGCTCTGTATAAAA---A------GT-CC---C--AT- 1428
Query 1157 GAAAA-GCCATCTCAGCAGCATCT-GCTTCCCTCATAGCATTGTTCAGAGAGATCAACCC 1214
||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1429 GAAAAAGCCATCTCAGCAGCAGCTCG-TTCCCTCATAGCATTGTTCAGAGAGATCAACCC 1487
Query 1215 TTTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCCCATTGCCAGACCTAAA-A 1273
|| ||| || ||||||||||| |||||||||||||||| | ||||||| | ||||||| |
Sbjct 1488 TTCGCTTCTGGTGAAAAAAGATCGTGGCCGTCCTGGAGCTACCATTGCAAAACCTAAACA 1547
Query 1274 AGTATGGAGAAGTC-AATGTCTTCAGCAATGTTCCCAATGTTGATTTATTGCAAGAAAGT 1332
| ||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1548 A-TATGGGGA-GTCTAATGTCTTCAGCAATGTTCCCAATGTTGAATTATTGCAAGAAAGT 1605
Query 1333 GATGATGATGAAGTGGC 1349
||| |||| || |||||
Sbjct 1606 GATAATGA-GA-GTGGC 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78884897395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5