BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31560.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497397 jgi|Araly1|497397|fgenesh2_kg.343__1__AT4G31560.1 800 0.0
Ahg905518 jgi|Araly1|905518|Al_scaffold_0003_2646 353 7e-97
Ahg905515 jgi|Araly1|905515|Al_scaffold_0003_2643 171 8e-42
> Ahg497397 jgi|Araly1|497397|fgenesh2_kg.343__1__AT4G31560.1
Length=589
Score = 800 bits (433), Expect = 0.0
Identities = 561/617 (91%), Gaps = 32/617 (5%)
Strand=Plus/Plus
Query 12 AAAAATCATGGCGAGACTTTTCGTCTCTATCCCTATGCAACCCACACAAATAAGCTTCCC 71
|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 1 AAAAATAATGGCGAGACTTTTCGTCTCTATCCTTATGCAACCCACACAGATAAGCTTCTC 60
Query 72 TGCGTCTTCTTCTCAGCCACTATTATCTCCGCCGGCGAACAA-TTTCACCGATGGTGGAG 130
|||||||||||||||||||||||| || |||||||||||||| |||| ||||||||| ||
Sbjct 61 TGCGTCTTCTTCTCAGCCACTATTCTCGCCGCCGGCGAACAATTTTC-CCGATGGTGTAG 119
Query 131 CTGGGGGATTATGTCTTACACGGAGAATCAGAGACAGTTCCGTGGTGACGCGAGCAGGGC 190
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 CCGGAGGATTATGTCTTACACGGAGAATCAGAGACTGTTCCGTGGTGACGCGAGCAGGGC 179
Query 191 CTAGTACGAGCAGCTACTTGCTCGCGTTCGCCATTCCTGCTACTCTTATCGCCGCCACTG 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTAGTACGAGCAGCTACTTGCTCGCGTTCGCCATTCCTGCTACTCTTATCGCCGCCACTG 239
Query 251 TCTTCACTTCAATCAAAATCGCTGACAAACTCGACGAAGATTTCCTTGAGGATATTGCGT 310
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTCACTTCAATCAAAATCGCTGATAAACTCGACGAAGATTTCCTTGAGGATATTGCGT 299
Query 311 TGAACCAAGCGATAAAAGCAGCAGAAAAGGGAGAGAATGGAGAAGGTGATATCTCACTGG 370
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 300 TGAACCAAGCGATAAAAGCAGCAGAAAAGGGAGAGAATGGTGAAGGGGAAATCTCACTGG 359
Query 371 ACGATGTGATTCAAGAACCTGTGCTTCAACGAACACGTAACCGGCCTAAACGTGAAGTTT 430
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 360 ATGATGTGATTCAAGAACCTGTGCTTCAACGAACTCGTAATCGGCCTAAACGTGAAGTTT 419
Query 431 AAAAACGCACACACAGCTTCTTCATGATGGGAATAGACGTTGTAACTGTAATACATGTTG 490
| |||||| ||||||| ||||||| || | | | ||| | || |
Sbjct 420 AGAAACGCGCACACAGATTCTTCA--AT---A-----C-----A--TGT--T----GT-G 455
Query 491 TGTTTTGTATAAGAAAATTTAAGCGTGTAGCCTTTCCTAGTCCCGTTTATAGTTGTAGTT 550
| ||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 456 T-TTT-GTATAAGAAAATGTAAGCTTGTAGCCTT-CCTAGTCCCGTTTATAGTTGTAGTT 512
Query 551 ACTGGT--T-TTACATTACCGTTTGATCATTTTGTAAAGAAAAAACGGATGATGAATCAA 607
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 ACTGGTCATATTACATTACCGTTTGATCATTTTGTAAAGAAAAAACGGATGATGAATCAA 572
Query 608 AAACCTCATTACAGTTA 624
||||||| ||||| |||
Sbjct 573 AAACCTCGTTACATTTA 589
> Ahg905518 jgi|Araly1|905518|Al_scaffold_0003_2646
Length=258
Score = 353 bits (191), Expect = 7e-97
Identities = 236/258 (91%), Gaps = 1/258 (0%)
Strand=Plus/Plus
Query 19 ATGGCGAGACTTTTCGTCTCTATCCCTATGCAACCCACACAAATAAGCTTCCCTGCGTCT 78
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCGAGACTTTTCGTCTCTTTCCCTATGCAACCCACACAAATAAGCTTCTCTGCGTCT 60
Query 79 TCTTCTCAGCCACTATTATCTCCGCCGGCGAACAATTTCACCGATGGTGGAGCTGGGGGA 138
||||| ||||||||||| ||||||| || ||| |||||| ||||||||| ||| ||||||
Sbjct 61 TCTTCCCAGCCACTATTCTCTCCGCTGGTGAAAAATTTCCCCGATGGTGTAGCCGGGGGA 120
Query 139 TTATGTCTTACACGGAGAATCAGAGACAGTTCCGTGGTGACGCGAGCAGGGCCTAGTACG 198
|||||||||| |||||||||||||||| |||| |||||||| |||| | || |||||||
Sbjct 121 TTATGTCTTAGACGGAGAATCAGAGACTGTTCTGTGGTGACCCGAGTAAAGCTTAGTACG 180
Query 199 AGCAGCTACTTGCTCGCGTTCGC-CATTCCTGCTACTCTTATCGCCGCCACTGTCTTCAC 257
||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 181 AGCAGCTACTTGCTCACGTTCGCAAATTCCTGCTACTCTTGTCGCCGCCACTGTCTTCAC 240
Query 258 TTCAATCAAAATCGCTGA 275
||||||||||||||||||
Sbjct 241 TTCAATCAAAATCGCTGA 258
> Ahg905515 jgi|Araly1|905515|Al_scaffold_0003_2643
Length=405
Score = 171 bits (92), Expect = 8e-42
Identities = 113/123 (92%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 181 CGAGCAGGGCCTAGTACGAGCAGCTACTTGCTCGCGTTCGCCA-TTCCTGCTACTCTTAT 239
|||| | ||| |||||||||||||||||||||| ||||||| | |||||||||||||| |
Sbjct 168 CGAGTAAGGCTTAGTACGAGCAGCTACTTGCTCACGTTCGCAAATTCCTGCTACTCTTGT 109
Query 240 CGCCGCCACTGTCTTCACTTCAATCAAAATCGCTGACAAACTCGACGAAGATTTCCTTGA 299
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 108 CGCCACCACTGTCTTCACTTCAATCAAAATCGCTGATAAACTCGACGAAGATTTACTTGA 49
Query 300 GGA 302
|||
Sbjct 48 GGA 46
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5