BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31730.1

Length=760
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944807 jgi|Araly1|944807|scaffold_701036.1                        778    0.0  


> Ahg944807 jgi|Araly1|944807|scaffold_701036.1
Length=514

 Score =  778 bits (421),  Expect = 0.0
 Identities = 477/504 (95%), Gaps = 4/504 (1%)
 Strand=Plus/Plus

Query  101  cacaacaacaacaaaaaTGAGACCATTGAGCGTACAATCGAAGTTTGAAGATGTGGCAAC  160
            |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct  5    CACAACAACAACAAAAATGAGACCGTTGAGCGTACAGTCGAAGTTTGAAGATGTGGCGAC  64

Query  161  GTCAACCTCCGTTAATCACCACGGAGTGACGCCGCAATCACCGTGGCACTCGCCGGTTCC  220
             |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  65   ATCAACCTCGGTGAATCACCACGGAGTGACGCCGCAATCACCGTGGCACTCGCCGGTTCC  124

Query  221  TTACCTCTTCGGCGGTTTAGCGGCGATGCTAGGACTAATCGCCTTTGCTCTTCTCATCCT  280
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  125  TTACCTCTTCGGCGGTTTAGCGGCGATGCTAGGACTAATCGCCTTTTCTCTTCTCATCCT  184

Query  281  CGCTTGCTCTTACTGGCGCCTGTCTTCCTCCGGCGAAGAAGATGGTCAAAACGTAGATGA  340
             || ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct  185  TGCCTGCTCTTACTGGCGCCTGTCTTCCTCCGGTGAAGAAGATGGTCAGAACGTTGATGA  244

Query  341  AGAGAAAGAGAGCCGGTCTGGAGATAAGGCGGCGAACGGAGCTTACGAGGAGAAGTTTCT  400
            |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  245  AGAGAAAGAGAGTCGGTCTGGAGATAAGGCGGCGAATGGAGCTTACGAGGAGAAGTTTCT  304

Query  401  TGTCATAATGGCCGGAGAAGATTTGCCGAGGTATCTGGCGACACCGGCGATGAAAAAGTG  460
            ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  305  TGTCATAATGGCCGGGGAAGACTTGCCGAGGTATCTCGCGACACCGGCGATGAAAAAGTG  364

Query  461  TACGTGTGGTGGTCACGAGGGTAAAATGGTGATTTCTCAGGAGGAAAGTGTTGCCAaaga  520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  TACGTGTGGTGGTCACGAGGGTAAAATGGTGATTTCTCAGGAGGAAAGTGTTGCCAAAGA  424

Query  521  ggaagagaagatgagagaaggcgaagaagagaaagtgaaagaTACCGGCGAGACAACTAC  580
            ||||| ||||||||||||||| ||||| || || ||||||||||||| ||| ||||| ||
Sbjct  425  GGAAGGGAAGATGAGAGAAGGTGAAGA-GA-AA-GTGAAAGATACCGACGAAACAACAAC  481

Query  581  TACAAGTCACTAAACTTTTCTTTT  604
            ||||||||||||||| ||| ||||
Sbjct  482  TACAAGTCACTAAACCTTT-TTTT  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28020343995


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5