BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31730.1 Length=760 Score E Sequences producing significant alignments: (Bits) Value Ahg944807 jgi|Araly1|944807|scaffold_701036.1 778 0.0 > Ahg944807 jgi|Araly1|944807|scaffold_701036.1 Length=514 Score = 778 bits (421), Expect = 0.0 Identities = 477/504 (95%), Gaps = 4/504 (1%) Strand=Plus/Plus Query 101 cacaacaacaacaaaaaTGAGACCATTGAGCGTACAATCGAAGTTTGAAGATGTGGCAAC 160 |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct 5 CACAACAACAACAAAAATGAGACCGTTGAGCGTACAGTCGAAGTTTGAAGATGTGGCGAC 64 Query 161 GTCAACCTCCGTTAATCACCACGGAGTGACGCCGCAATCACCGTGGCACTCGCCGGTTCC 220 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 ATCAACCTCGGTGAATCACCACGGAGTGACGCCGCAATCACCGTGGCACTCGCCGGTTCC 124 Query 221 TTACCTCTTCGGCGGTTTAGCGGCGATGCTAGGACTAATCGCCTTTGCTCTTCTCATCCT 280 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 125 TTACCTCTTCGGCGGTTTAGCGGCGATGCTAGGACTAATCGCCTTTTCTCTTCTCATCCT 184 Query 281 CGCTTGCTCTTACTGGCGCCTGTCTTCCTCCGGCGAAGAAGATGGTCAAAACGTAGATGA 340 || ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 185 TGCCTGCTCTTACTGGCGCCTGTCTTCCTCCGGTGAAGAAGATGGTCAGAACGTTGATGA 244 Query 341 AGAGAAAGAGAGCCGGTCTGGAGATAAGGCGGCGAACGGAGCTTACGAGGAGAAGTTTCT 400 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 245 AGAGAAAGAGAGTCGGTCTGGAGATAAGGCGGCGAATGGAGCTTACGAGGAGAAGTTTCT 304 Query 401 TGTCATAATGGCCGGAGAAGATTTGCCGAGGTATCTGGCGACACCGGCGATGAAAAAGTG 460 ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 305 TGTCATAATGGCCGGGGAAGACTTGCCGAGGTATCTCGCGACACCGGCGATGAAAAAGTG 364 Query 461 TACGTGTGGTGGTCACGAGGGTAAAATGGTGATTTCTCAGGAGGAAAGTGTTGCCAaaga 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 TACGTGTGGTGGTCACGAGGGTAAAATGGTGATTTCTCAGGAGGAAAGTGTTGCCAAAGA 424 Query 521 ggaagagaagatgagagaaggcgaagaagagaaagtgaaagaTACCGGCGAGACAACTAC 580 ||||| ||||||||||||||| ||||| || || ||||||||||||| ||| ||||| || Sbjct 425 GGAAGGGAAGATGAGAGAAGGTGAAGA-GA-AA-GTGAAAGATACCGACGAAACAACAAC 481 Query 581 TACAAGTCACTAAACTTTTCTTTT 604 ||||||||||||||| ||| |||| Sbjct 482 TACAAGTCACTAAACCTTT-TTTT 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28020343995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5