BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31780.2 Length=1998 Score E Sequences producing significant alignments: (Bits) Value Ahg944801 jgi|Araly1|944801|scaffold_701030.1 2715 0.0 > Ahg944801 jgi|Araly1|944801|scaffold_701030.1 Length=1644 Score = 2715 bits (1470), Expect = 0.0 Identities = 1589/1647 (96%), Gaps = 6/1647 (0%) Strand=Plus/Plus Query 206 tctctctctctATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCCGCACCG 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3 TCTCTCTCTCTATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCGGCACCG 62 Query 266 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTAACCTCTAGAAATCGATCCCCGTGTTCG 325 |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| Sbjct 63 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTTGCCTCTCGAAATCGATCTCCGTGTTCG 122 Query 326 AATTCAGATGGGTATGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGTTTCCGGACT 385 | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 123 ATTTCAGATGGGTACGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGCTTCCGGACT 182 Query 386 TTACCCTCCCGAAGGATGGGAAAAACCCTAGCTTCCT-TGAGCTTCAACACTAAGAGCAG 444 |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| Sbjct 183 TTACCCTCCCGAAGGACGGGAAAAACCCTAGCTT-CTCTGAGCTTCAACACTAAGAGCAG 241 Query 445 TGCTGGTTCGAGTCTCCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 504 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 TGCCGGTTCGAGTCTGCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 301 Query 505 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTATCGAGTGATGA 564 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 302 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTGTCGAGCGATGA 361 Query 565 GAATGGGATTAGGGAAAATGGGACTGGTGGGGTTTTGGGTGAGGAGGGATTGCCGTTGAA 624 |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 362 GAATGGGATTAGAGAAGATGGGACTGGTGGGGTTTTGGGTGAGGAGGGCTTGCCGTTGAA 421 Query 625 TGGTGTTGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 684 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TGGCGTCGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 481 Query 685 TCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTA 744 ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 482 CCACAGGGCTTCTGCGGAAGCCATTAAAGCTGCTTTTAACCAGGAGTTTGGAGATGAGTA 541 Query 745 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 601 Query 805 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 661 Query 865 ATCTCCACGCATTGTTCATCAATCTAATTTTGCTGCAACTTCCACTTTTATTGCCAGGGA 924 ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 662 ATCTCCACGCATTATTCATCAATCTAATTTTGCTGCAACTTCGACTTTTATTGCCAGGGA 721 Query 925 AATCGCCCAAGGGTTAATGAAATATCAACCAGATATCATAATCAGTGTTCATCCGTTGAT 984 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 722 AATCGCCCAAGGGTTAATGAAATATCAACCAGACATCATAATCAGTGTTCATCCGTTGAT 781 Query 985 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 1044 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 841 Query 1045 CACGGTTATTACAGACTTAAGCACTTGCCATCCTACATGGTTTCATAAGCTTGTGACAAG 1104 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 842 CACGGTTATTACAGACTTGAGCACTTGCCATCCCACATGGTTTCATAAGCTTGTGACAAG 901 Query 1105 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 1164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 961 Query 1165 ACAAATCAAAGTTTATGGCCTCCCTGTTCGACCTTCCTTTGTGAAACCAGTTCGCCCAAA 1224 ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 962 ACAAATCAAAGTTTATGGCCTTCCTGTTCGACCTTCCTTTGTGAAGCCTGTTCGCCCAAA 1021 Query 1225 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1081 Query 1285 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATGCTTTGTA 1344 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1082 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATTCTTTGTA 1141 Query 1345 TGATAAGAATCTTGGTGAAGCAGTAGGTCAGGTTCTTATAATCTGTGGACGGAACAAGAA 1404 |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1142 TGATGAGAGTCTTGGTGAAGCAGTAGGTCAGGTTCTTGTAATCTGTGGACGGAACAAGAA 1201 Query 1405 ACTCCAAAGCAAATTAAGTTCCTTAGACTGGAAAATCCCTGTCCAGGTTAAGGGGTTTAT 1464 |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 1202 ACTCCAAAGCAAATTAAGCTCCTTAGATTGGAAAATCCCAGTCCAGGTTAAGGGGTTTAT 1261 Query 1465 AACGAAAATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1524 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 AACGAAGATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1321 Query 1525 CACTATAGCTGAAGCTATGATAAGAGGGTTACCGATAATCTTAAACGGTTACATCGCTGG 1584 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1322 GACTATAGCTGAAGCTATGATAAGAGGGCTACCGATAATCTTAAACGGTTACATTGCTGG 1381 Query 1585 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAAAACGGATGTGGGAAATTCTCAAAATC 1644 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1382 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAGAACGGATGTGGGAAATTCTCAAAATC 1441 Query 1645 ACCGAAAGAGATATCGAAGATTGTAGCGGATTGGTTTGGACCGGCATCGAAAGAGTTGGA 1704 ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 1442 ACCAAAAGAGATATCGAAAATTGCAGCGGATTGGTTTGGACCGGCATCGAAAGAGCTGGA 1501 Query 1705 GATAATGTCACAGAATGCATTGAGGCTGGCTAAACCAGAAGCAGTGTTCAAGATAGTGCA 1764 |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| Sbjct 1502 GATAATGTCACAGAATGCATTGAGACTGGCTAGACCAGAAGCGGTGTTCAAGATAGTGCA 1561 Query 1765 TGATATGCACGAGCTTGTCCGTaaaaaaaaTAGTCTTCCTCAACTCTCTTGCACTGCCTA 1824 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1562 TGATATGCACGAGCTTGTCCGTCAAAAAAATTGTCTTCCTCAACTCTCTTGCACTGCCTA 1621 Query 1825 ATAATCTATATATGTTGTAACTCTATT 1851 ||||| |||| | | ||||||||||| Sbjct 1622 ATAAT--ATATCT-T-GTAACTCTATT 1644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75113963140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5