BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31810.1 Length=1581 Score E Sequences producing significant alignments: (Bits) Value Ahg491556 jgi|Araly1|491556|fgenesh2_kg.7__989__AT4G31810.1 2073 0.0 > Ahg491556 jgi|Araly1|491556|fgenesh2_kg.7__989__AT4G31810.1 Length=1496 Score = 2073 bits (1122), Expect = 0.0 Identities = 1311/1400 (94%), Gaps = 22/1400 (2%) Strand=Plus/Plus Query 1 GGAAATGATCTGACGGCTAGGAATCACCGGCGGCCATAGCTTGAGAGGCAAAACCCAAAA 60 ||||||||||||||||||||||||| ||| ||| || | | | |||||||||||| Sbjct 1 GGAAATGATCTGACGGCTAGGAATCGCCGCCGG-----GCAT-A-A-CCAAAACCCAAAA 52 Query 61 CCCTCGGAAACACAGAGGCGTCTTCTCGACGGAGAGCGAC--------AGAGATATGCAA 112 ||||||||||| |||||||||||||||||||||||||||| ||||| |||||| Sbjct 53 CCCTCGGAAACCCAGAGGCGTCTTCTCGACGGAGAGCGACAGAGTGAGAGAGAGATGCAA 112 Query 113 ACAGTGAAAGCTTTGAGGAGAGTGAGTGAACCCTTACAATGGGTTCGGTCTGTTTCTTAT 172 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 113 ACAGTGAAAGCTTTGAGGAGAGTGACTAAACCCTTACAATGGGTTCGGTCTGTTTCTTAT 172 Query 173 GGAAGACGCTTTTCTGCTCTCCCAAACTATTCCGCATCAGATGCAGATTTCGAAGACCAG 232 |||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct 173 GGAAGAAGCTTTTCTGCTCTCCCAAACTATTCCGCAGCAGATGCTGATATCGAAGACCAG 232 Query 233 GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCCATTCTCAATA-ACCCATCTTCTCT 291 ||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| Sbjct 233 GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCTATTCTCAATAGTCCC-TCTTCTCT 291 Query 292 CAATGCTCTTTCTGCGCCTATGGTTGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA 351 |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 292 TAATGCTCTTTCTACGCCTATGGTAGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA 351 Query 352 GAACCCAGCTATTTCCTTTGTTTTGATGAAGGGTAGCGGTAAAACTTTCTGCTCTGGTGC 411 ||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 352 GAATCCAGCTATTTCTTTTGTTTTGATGAAGGGTAGCGGCAAAACGTTCTGTTCTGGTGC 411 Query 412 AGATGTCTTGTCTCTTTATCACTCGATCAATGAAGGAAATACTGAAGAATCTAAACTCTT 471 |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 412 AGATGTCTTGCCTCTGTATCACTCGATCAATGAAGGAAATACTGAAGAAAGTAAACTCTT 471 Query 472 TTTCGAGAACTTGTACAAGTTTGTATACCTCCAAGGAACGTATTTAAAACCAAATATAGC 531 |||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| Sbjct 472 TTTCGACAACTTGTACAAGTTTGTATACCTCCAAGGAACATATTTGAGACCAAATATAGC 531 Query 532 AATAATGGATGGTGTGACCATGGGTTGTGGTGGTGGAATTTCACTTCCAGGGATGTTTCG 591 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 532 TATAATGGATGGTGTAACCATGGGTTGTGGTGGTGGAGTTTCAATTCCAGGGATGTTTCG 591 Query 592 TGTGGCTACAGATAAAACTGTGTTGGCCCATCCAGAGGTCCAAATTGGTTTTCATCCTGA 651 ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 592 TGTGGCTACAGATAAGACTGTGTTGGCCCATCCAGAGGTTCAAATTGGTTTCCATCCTGA 651 Query 652 TGCAGGAGCTTCCTATTATCTTTCACGGCTTCCTGGTTATTTAGGGGAATACTTGGCTCT 711 ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 652 TGCCGGAGCTTCCTATTACCTTTCACGGCTTCCTGGCTATTTAGGGGAATACTTGGCTCT 711 Query 712 AACGGGGCAGAAACTTAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG 771 ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 AACAGGGCAGAAGCTAAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG 771 Query 772 CTTAAACGCGAGACTTCCGTTGATTGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC 831 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 772 CTTAAACGCGAGACTTCCGTTGATCGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC 831 Query 832 TGCTGTCATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG 891 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 TGCCGTTATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG 891 Query 892 CGTACTGCACAAGATAGAGTTGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT 951 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 892 TGTACTGCACAAGATTGAGATGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT 951 Query 952 CATTGAAGCTATGGAAAATGAAGCTGCTAATTCGTGCAATGAATGGTGCAAGAAAACTCT 1011 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 952 CATTGAGGCTATGGAAAATGAGGCTGCTAATTCTTGCAATGAATGGTGCAAGAAAACTCT 1011 Query 1012 CAAACAGATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA 1071 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 CAAACAAATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA 1071 Query 1072 AGGTAGATTCCAAACCCTTGATCAATGTCTCACACATGAATACCGTATATCCATTTGTGG 1131 |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| Sbjct 1072 AGGTAGATTCCAAACCCTTGATCAGTGTCTCACACGTGAATACCGTATATCTATTTGTGG 1131 Query 1132 AGTCTCAAA-AGTAGTCTCTGGCGACTTTTGCGAGGGTATTCGAGCCCGTTTGGTAGATA 1190 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||| || | Sbjct 1132 AGTCTCAAAGAC-AGTCTCTGGCGACTTTTGCGAGGGTATACGAGCCCGTTTGGTGGACA 1190 Query 1191 AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTAGAAGATGTGAGCAAAGACATGGTGG 1250 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1191 AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTACAAGATGTGAGCAAAGACATGGTGG 1250 Query 1251 ATTGCTACTTCACGCCAGCC-TCAGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA 1309 ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1251 ATTGCTACTTCTCGCCAGCCAT-AGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA 1309 Query 1310 ACAGCTCAACGAGAGCCTTATTTTTGAGGAAAAACCTACTGATGACACTCATTACTTGCA 1369 |||||||||||||||||||| || |||||||||| |||||||||| |||||||||||||| Sbjct 1310 ACAGCTCAACGAGAGCCTTACTTCTGAGGAAAAATCTACTGATGATACTCATTACTTGCA 1369 Query 1370 ATAAAGAATTCCACCGATCT 1389 |||||||||||||||| ||| Sbjct 1370 ATAAAGAATTCCACCGGTCT 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59230330975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5