BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31860.1 Length=1540 Score E Sequences producing significant alignments: (Bits) Value Ahg491551 jgi|Araly1|491551|fgenesh2_kg.7__984__AT4G31860.1 2176 0.0 Ahg344104 jgi|Araly1|344104|fgenesh1_pg.C_scaffold_4000446 970 0.0 Ahg491552 jgi|Araly1|491552|fgenesh2_kg.7__985__AT4G31850.1 67.6 3e-10 > Ahg491551 jgi|Araly1|491551|fgenesh2_kg.7__984__AT4G31860.1 Length=1556 Score = 2176 bits (1178), Expect = 0.0 Identities = 1429/1541 (93%), Gaps = 53/1541 (3%) Strand=Plus/Plus Query 50 ACAATCTGAA-TTTGATCCCAAATCAAAA-------C-T-TTCTTCTTCTTCGTCTTCCT 99 |||||||||| |||||||||||||||||| | | |||||||||||| ||||||| Sbjct 19 ACAATCTGAATTTTGATCCCAAATCAAAACTTTCCTCTTCTTCTTCTTCTTCTTCTTCCT 78 Query 100 CTAATCAAAACTGTCTCCTACCAAAGGTCTTTCCTTTCTCCAGCCAGATATGTGAGGAAA 159 |||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| ||| Sbjct 79 CTAATCAAGATTGTCTCCTACCAAAGGTCTTGCCTTTCTCCGGCCAGATATGTGAGAAAA 138 Query 160 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTG-A--CGT--T-TTCAAATCTT 213 ||||||||||||||||||||||||||||||||||||||| | | | | |||||||||| Sbjct 139 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTGAATTCTTCATATTCAAATCTT 198 Query 214 -G-AGAGAGATGGGTATATATCTAAGTACTCCAAAAACAGACAAGTTCTCAGAAGATGGC 271 | | ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 199 GGTAAAGAGATGGGTATATATCTAAGTACTCCTAAAACAGAAAAGTTCTCAGAAGATGGC 258 Query 272 GAAAATCATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 331 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 GAAAATGATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 318 Query 332 GATGCTCATGCTGCAATACTTGATCTCGATGATAACACTTCCTTCTTGGGTGTCTATGAT 391 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 319 GATGCGCATGCTGCAATTCTTGATCTCGATGATAACACTTCCTTTTTGGGTGTCTATGAT 378 Query 392 GGTCATGGAGGTAAAGTTGTTTCTAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTCTT 451 ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 379 GGTCATGGAGGTAAAGTTGTTTCAAAGTTCTGCGCCAAGTATCTACATCAGCAGGTTCTC 438 Query 452 AGTGATGAGGCGTATGCAGCTGGAGACGTAGGGACTTCTCTTCAAAAAGCATTTTTCAGA 511 ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 439 AGTAATGAGGCATATGCAGCTGGAGACGTAGGAACTTCTCTTCAAAAAGCATTTTTCAGA 498 Query 512 ATGGATGAGATGATGCAAGGACAAAGAGGGTGGCGAGAGTTAGCAGTACTTGGTGACAAA 571 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 499 ATGGATGAGATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCAGTACTCGGTGACAAA 558 Query 572 ATCAATAAGTTCAGTGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGTGGGGACAGT 631 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 559 ATCAATAAGTTCAGCGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGCGGGGATAAC 618 Query 632 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGACCT 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 619 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGGCCT 678 Query 692 AATTCTGGGAGCACGGCATGCGTAGCTGTTGTTAGAGACAAGCAGCTATTTGTTGCAAAT 751 |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 679 AATTCTGGTAGCACGGCATGCGTAGCTGTTATTAGAGACAAACAGCTATTTGTTGCAAAT 738 Query 752 GCAGGTGACTCACGTTGTGTGATATCCAGAAAGAATCAGGCTTATAATCTTTCTAGAGAT 811 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 739 GCAGGTGACTCACGTTGTGTGATATCCAGAAAAAATCAGGCTTACAATCTTTCTAGAGAT 798 Query 812 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 858 Query 872 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 931 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 918 Query 932 CAGAATAAGTTTTTGCCATCTGAAAAGCAAATAGTTACCGCTAGTCCAGATGTTAACACT 991 ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||| Sbjct 919 CAGAATAAGTTTTTGTCATTTGAAAAGCAAATAGTTACCGCCAGTCCAGATGTAAACACT 978 Query 992 GTTGAACTCTGTGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1051 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 GTTGAACTCTGCGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1038 Query 1052 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1098 Query 1112 TCGGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACTTCAGGTGGTGAA 1171 || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1099 TCCGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACCGCAGGTGGTGAA 1158 Query 1172 GGCTGTGATAACATGACCATGATATTGGTTCGATTCAAGAA-CC----C--T--AC---- 1218 ||||||||||||||||||||||| ||||||| ||||||||| || | | || Sbjct 1159 GGCTGTGATAACATGACCATGATCTTGGTTCAATTCAAGAAGCCTGTTCAGTCCACGGAA 1218 Query 1219 --T-C-C-ATCAGAGACCGAACTAAAACCAGAAGCAAGCCAGGCAGAAGGAAACCACGAT 1273 | | | |||||| ||||||||||||| ||| |||||||||| |||| |||||||||| Sbjct 1219 CCTACTCCATCAGAAACCGAACTAAAACTGGAACCAAGCCAGGCCGAAGCAAACCACGAT 1278 Query 1274 GAGCCGAGCTCATCAAACTAGGCCCATCCTCAG-AG--TCACGGAAGATCCC-TCTAGAT 1329 ||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| Sbjct 1279 GAGCCGAGCTCATCAAACTAGCCCCATCCTCAGGAGGGTCACGGAAGATCCCATCTAGAT 1338 Query 1330 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCTCAACCTGAC 1389 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1339 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCACAACCTGAC 1398 Query 1390 GTT---G---ATTTCAGTATATC-ACCATTTCCTCCGTGTGCAGACTTTTGTCTCATGAG 1442 ||| | |||||||||| || ||||||| ||||| |||||||||||||||||| ||| Sbjct 1399 GTTTCTGGGGATTTCAGTAT-TCCACCATTTTCTCCGCGTGCAGACTTTTGTCTCACGAG 1457 Query 1443 CTCCCATAATGTAGAAAGGAATAATTGGTGTAAAAATGTTGTTGGCCTTAAAAGAACATA 1502 ||||||||||| |||| | |||||||| ||| |||||||||||||||||||| ||||||| Sbjct 1458 CTCCCATAATGCAGAA-GAAATAATTGATGTGAAAATGTTGTTGGCCTTAAA-GAACATA 1515 Query 1503 TCATCAT---GTAAATAAACAAAACAATAAGACATTTACAC 1540 ||||||| ||||||||||||||||||||||||||||||| Sbjct 1516 TCATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1556 > Ahg344104 jgi|Araly1|344104|fgenesh1_pg.C_scaffold_4000446 Length=1068 Score = 970 bits (525), Expect = 0.0 Identities = 904/1086 (83%), Gaps = 30/1086 (3%) Strand=Plus/Plus Query 221 ATGGGTATATATCTAAGTACTCCAAAAACAGACAAGTTCTCAGAAGATGGCGAAAATCAT 280 ||||||| ||| |||||| |||| ||||| || ||||| ||||||||||| || ||| || Sbjct 1 ATGGGTACATACCTAAGTTCTCCTAAAACTGATAAGTTATCAGAAGATGGTGAGAATGAT 60 Query 281 AAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGT-CCATGGAAGATGCTCA 339 || ||||||||||||||||| ||||||||||||||||| || | ||||||||||||| || Sbjct 61 AATCTCAGATATGGTTTATCGTCTATGCAAGGTTGGCGCGC-TACCATGGAAGATGCGCA 119 Query 340 TGCTGCAATACTTGATCTCGATGATAACACTTCCTTCTT-GGGTGTCTATGATGGTCATG 398 ||||||||| |||||||| |||||||| || || ||||| ||| || || ||||| |||| Sbjct 120 TGCTGCAATTCTTGATCTGGATGATAAGACGTCGTTCTTCGGG-GTGTACGATGGGCATG 178 Query 399 GAGGTAAAGTTGTTTCTAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTCTTAGTGATG 458 | |||||||| ||| | ||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 179 GGGGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATG 238 Query 459 AGGCGTATGCAGCTGGAGACGTAGGGACTTCTCTTCAAAAAGCATTTTTCAGAATGGATG 518 | || ||| |||||||||| ||| || |||||| || ||||||||| |||||||||| Sbjct 239 AAGCATATAAAGCTGGAGACATAGAAACAGCTCTTCGAAGAGCATTTTTTAGAATGGATG 298 Query 519 AGATGATGCAAGGACAAAGAGGGTGGCGAGAGTTAGCAGTACTTGGTGACAAAATCAATA 578 | |||||||||||||||||||| |||||||||||||| ||||| |||||||| || |||| Sbjct 299 ACATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTCGGTGACAAGATGAATA 358 Query 579 AGTTCAGTGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGTGGGGACAGTGCTAATA 638 | || || || ||||||||||| ||||||||||||||||||| || |||| |||||| Sbjct 359 AATTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACA---CTAATA 415 Query 639 AAC--CT-GATGCTTGGGCGT-TTGAGGAAGGTCCTCATTCTGATTTTGCTGGACCTAAT 694 ||| | ||| |||| | | ||||||| ||||||||||||||||| | ||||||| | Sbjct 416 AACAGCCCGATAATTGGCC-TCTTGAGGATGGTCCTCATTCTGATTTCACGGGACCTACT 474 Query 695 TCTGGGAGCACGGCATGCGTAGCTGTTGTTAGAGACAAGCAGCTATTTGTTGCAAATGCA 754 || ||| |||| |||||||||||| || ||| ||| ||| |||| |||||||||||||| Sbjct 475 TCGGGGTGCACAGCATGCGTAGCTCTTATTAAAGATAAGAAGCTCTTTGTTGCAAATGCC 534 Query 755 GGTGACTCACGTTGTGTGATATCCAGAAAGAATCAGGCTTATAATCTTTCTAGAGATCAC 814 ||||||||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||| Sbjct 535 GGTGACTCACGTTGTGTGATATCAAGAAACAGTCAGGCTTACAATCTTTCTAAAGATCAC 594 Query 815 AAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACATGCA 874 || || |||||||||| ||| |||||||||||||||||||||||||||||||| || || Sbjct 595 AAGCCTGATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACGCT 654 Query 875 GGGCGAGTCAATGGAAGCTTAAATCT-ATCACGAGCTATCGGTGACATGGAATTCAAGCA 933 || || ||||||||||||| ||||| | || |||| || ||||| |||||||||||||| Sbjct 655 GGTAGAATCAATGGAAGCTTGAATCTGA-CAAGAGCCATTGGTGATATGGAATTCAAGCA 713 Query 934 GAATAAGTTTTTGCCATCTGAAAAGCAAATAGTTACCGCT-AGTCCAGATGTTAACACTG 992 ||| || ||||| ||||||||||||||||| ||||| ||| | ||||||| | |||||| Sbjct 714 GAACAAATTTTTACCATCTGAAAAGCAAATGGTTACTGCTGA-TCCAGATATAAACACTA 772 Query 993 TTGAACTCTGTGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGCA 1052 |||| || ||||||||||||||||| |||||| |||| || |||||||| |||||||| | Sbjct 773 TTGACCTATGTGATGATGATGATTTTCTTGTTGTTGCATGTGATGGAATATGGGATTGTA 832 Query 1053 TGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTCT 1112 || ||||||| |||| || ||||| || |||||||| || || || || || ||||| | Sbjct 833 TGTCAAGCCAGGAACTAGTGGATTTTATCCATGAACAGTTAAAATCTGAAACAAAACTTT 892 Query 1113 CGGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACTTC-AGGTGGTGAA 1171 | |||||| ||||||||| | |||| |||| |||||||| ||||| | || ||| ||| Sbjct 893 CCACGGTATGCGAAAAAGTTGTTGATAAATGTTTGGCTCCAGACACTACGAG-TGGAGAA 951 Query 1172 GGCTGTGATAACATGACCATGATATTGGTTC-GATTCAAGAACCCTA-CTCCATCAGAGA 1229 || |||||||| |||||||| || ||||||| | |||||||| |||| | ||||| |||| Sbjct 952 GGTTGTGATAATATGACCATCATCTTGGTTCAG-TTCAAGAAGCCTAAC-CCATCCGAGA 1009 Query 1230 CCGAACTAAAACCAGAAGCAAGCCAGGC-AGAAGGAAACCACGATGAGCCGAGCTCATCA 1288 | |||| | ||||| || ||| | |||| || | | |||||||||||||| ||| Sbjct 1010 CTGAAC-----C-AGAAG-AATCCAAACCAGAACCAAGCGAAGATGAGCCGAGCTCTTCA 1062 Query 1289 AACTAG 1294 | |||| Sbjct 1063 AGCTAG 1068 > Ahg491552 jgi|Araly1|491552|fgenesh2_kg.7__985__AT4G31850.1 Length=3448 Score = 67.6 bits (36), Expect = 3e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 1502 ATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1540 ||| ||||||||||||||||||||||||||||||||||| Sbjct 3448 ATCGTCATGTAAATAAACAAAACAATAAGACATTTACAC 3410 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57668630930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5