BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31870.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328542 jgi|Araly1|328542|fgenesh1_pm.C_scaffold_7000769 902 0.0
Ahg932631 jgi|Araly1|932631|scaffold_400619.1 538 2e-152
> Ahg328542 jgi|Araly1|328542|fgenesh1_pm.C_scaffold_7000769
Length=723
Score = 902 bits (488), Expect = 0.0
Identities = 626/690 (91%), Gaps = 20/690 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTCTCTTACGCATCATTCTCTACACCCTTCAATGGTTTCGCTGCAAATCCGT-C 59
||||| | || ||||||||||||| |||| ||||||||||||||||||||| || | |
Sbjct 1 ATGGCCTCCTTTTACGCATCATTCGCTACTGTCTTCAATGGTTTCGCTGCAAA-CCCTCC 59
Query 60 TCCG-ATTACTTCCGCTTTTCTCGGCCCATCATTGAGATTCTCCACCAGAACATCAAAAA 118
|||| ||| |||| ||| |||||| ||| | |||||||||||||||| ||||||||||||
Sbjct 60 TCCGAATT-CTTCGGCTATTCTCGTCCCTTAATTGAGATTCTCCACCGGAACATCAAAAA 118
Query 119 CTCGG---A-ATC--CG--A-GTAATGGGGTTTCAGTGAAATCGTCAAATAGTCATAGGT 169
||||| | ||| | | ||||||||||||| |||||||||| |||| ||||||||
Sbjct 119 CTCGGAATATATCTGGGTTAGGTAATGGGGTTTCCCTGAAATCGTCGAATAATCATAGGT 178
Query 170 TTCTAGTCAAATCTAAAAATTTCAGTGTCTATGCAAGGGCTGCAGCAGAGAAGTCTGTTC 229
||||||||||||| | |||||| |||| |||||||| ||||| ||||||||| ||||||
Sbjct 179 TTCTAGTCAAATCCAGAAATTTTGGTGTTTATGCAAGAGCTGCTGCAGAGAAGACTGTTC 238
Query 230 ACGATTTCACTGTAAAGGACATCGATGGTAATGATGTTTCTCTGGACAAATTCAAAGGAA 289
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 239 ACGATTTCACTGTAAAGGACATAGATGGGAATGATGTTTCTCTGGACAAATTCAAAGGAA 298
Query 290 AACCTTTGTTGATCGTTAACGTTGCGTCAAGATGTGGTTTGACATCATCAAATTACTCAG 349
||||| |||||||| ||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 299 AACCTCTGTTGATCTTTAACGTCGCTTCAAGATGTGGTTTGACATCATCAAATTACTCGG 358
Query 350 AGCTTTCTCAACTGTACGAAAAATACAAGAACCAA-G-GATTTGAGATTCTTGCTTTCCC 407
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 359 AGCTTTCTCATCTGTACGAAAAATACAAGAACCAAGGTGATTTGAGATTCTTGCTTTCCC 418
Query 408 TTGCAATCAATTTGGAGGTCAAGAACCCGGTTCAAACCCTGAGATCAAGCAATTTGCTTG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGCAATCAATTTGGAGGTCAAGAACCCGGTTCAAACCCTGAGATCAAGCAATTTGCTTG 478
Query 468 CACCCGGTTCAAAGCAGAGTTCCCTATATTCGACAAGGT-TGATG-TG--AATGGACCAA 523
|||||| ||||||| ||||||||||||||||||||||| || || || ||||||||||
Sbjct 479 CACCCGATTCAAAGTGGAGTTCCCTATATTCGACAAGGTATGTTGATGTCAATGGACCAA 538
Query 524 GCACAGCTCCAATCTACAAGTTCTTGAAATCCAATGCTGGTGGTTTCCTTGGTGATATCA 583
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 539 GCACAGCTCCAATCTACAAGTTCTTGAAATCTAATGCTGGTGGTTTTCTTGGTGATATCA 598
Query 584 TCAAATGGAACTTTGAGAAATTCTTGGTTGATAAAAAGGGCAAAGTTGTCGAGAGATACC 643
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 599 TCAAATGGAACTTTGAGAAATTCTTGGTTGATAAGAAGTGCAAAGTTGTCGAGAGATACC 658
Query 644 CTCCCACAACTTCTCCTTTCCAAA-TCGAG 672
||||||| |||||||||||||||| |||||
Sbjct 659 CTCCCACGACTTCTCCTTTCCAAAATCGAG 688
> Ahg932631 jgi|Araly1|932631|scaffold_400619.1
Length=751
Score = 538 bits (291), Expect = 2e-152
Identities = 526/638 (82%), Gaps = 22/638 (3%)
Strand=Plus/Plus
Query 76 TTTCTCGGCCCATCATTGAGATTCTCCACCAGAACATCAAAAACTCG-GAATCCGAGTAA 134
||||||| ||| || || | |||||||||| ||| ||| || ||| ||||| ||||||
Sbjct 105 TTTCTCGTCCCTTCCTTCAAATTCTCCACCGGAATATC-GAATTTCGCGAATCTGAGTAA 163
Query 135 TGGGGTTTCAGTGAAATCGT-CAAATAGTCATAGGTTTCTAGTCAAATCTAAAAATTTCA 193
|||| |||| | ||||| | ||| || || | ||||||| |||| || |||||
Sbjct 164 TGGGTTTTCTCTAAAATC-TCCAATTAATCCTGGGTTTCTCTTCAAGTCCCGTCCTTTCA 222
Query 194 GTG-TCTATGCAAGGGCTGCAGCAGAGAAGTCTGTTCACGATTTCACTGTAAAGGACATC 252
|| || | || || ||||| ||||| ||| | |||||||| ||||| || ||||||||
Sbjct 223 CTGTTC-AAGCTAGAGCTGCTGCAGAAAAGACCGTTCACGACTTCACCGTTAAGGACATT 281
Query 253 GATGGTAATGATGTTTCTCTGGACAAATTCAAAGGAAAACCTT-TGTTGATCGTTAACGT 311
||||| || |||||| || || ||||||| || || ||| || ||||||| || || ||
Sbjct 282 GATGGGAAAGATGTTGCTTTGAACAAATTTAAGGGGAAA-GTTATGTTGATTGTCAATGT 340
Query 312 TGCGTCAAGATGTGGTTTGACATCATCAAATTACTCAGAGCTTTCTCAACTGTACGAAAA 371
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 341 TGCTTCAAGATGTGGTTTGACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAA 400
Query 372 ATACAAGAA-CCAAGGATTTGAGATTCTTGCTTT-CCCTTGCAATCAATTTGGAGGTC-A 428
|||||| || |||||||||||||||||| ||||| |||| ||||||| ||||| || |
Sbjct 401 ATACAA-AAGCCAAGGATTTGAGATTCTAGCTTTTCCCT-GCAATCAGTTTGGTT-TCCA 457
Query 429 AGAACCCGGTTCAAACCCTGAGATCAAGCAATTTGCTTGCACCCGGTTCAAAGCAGAGTT 488
||| ||||| |||||| | |||||||| |||||||||||||||||||| |||||||||||
Sbjct 458 AGAGCCCGGGTCAAACTCGGAGATCAAACAATTTGCTTGCACCCGGTTTAAAGCAGAGTT 517
Query 489 CCCTATATTCGACAAGGTTGATGTGAATGGACCAAGCACAGCTCCAATCTAC-AAGTTCT 547
||||||||| || |||||||| |||||||||||||||||||| || |||||| || ||||
Sbjct 518 CCCTATATTTGATAAGGTTGACGTGAATGGACCAAGCACAGCGCCCATCTACGAA-TTCT 576
Query 548 TGAAATCCAATGCTGGTGGTTTCCTTGG-TGATATCATCAAATGGAACTTTGAGAAA-TT 605
||||||| || || || || ||| |||| || | |||| |||||||||||||| ||| ||
Sbjct 577 TGAAATCAAACGCAGGAGGATTC-TTGGGTGGTCTCATTAAATGGAACTTTGA-AAAGTT 634
Query 606 CTTGGTTGATAAAAAGGGCAAAGTT-GTCGAGAGATACCCTCCCACAACTTCTCCTTTCC 664
||| | ||||||||||| |||| | || ||||| ||||||||||| || || |||||||
Sbjct 635 TTTGATCGATAAAAAGGG-AAAGGTCGTTGAGAGGTACCCTCCCACCACATCCCCTTTCC 693
Query 665 AAATCGAGAAGGACATCCAGAAGTTGCTTGCGGCTTAA 702
|||||||||| |||||||||||||||||||| ||||||
Sbjct 694 AAATCGAGAAAGACATCCAGAAGTTGCTTGCCGCTTAA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5