BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31875.1
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491549 jgi|Araly1|491549|fgenesh2_kg.7__982__AT4G31875.1 501 2e-141
> Ahg491549 jgi|Araly1|491549|fgenesh2_kg.7__982__AT4G31875.1
Length=546
Score = 501 bits (271), Expect = 2e-141
Identities = 351/387 (91%), Gaps = 16/387 (4%)
Strand=Plus/Plus
Query 207 AATTCCTTCGACTGGCCCGTATACTCAG-TTTTCCTCGACC-CC--GAAGATCTTCTTCT 262
|||||||||| ||||||||||||||||| |||| |||||| || ||||||||| ||||
Sbjct 164 AATTCCTTCGTCTGGCCCGTATACTCAGATTTT-GTCGACCTCCGAGAAGATCTTTTTCT 222
Query 263 CGGAGAAGTTTGTGAAGAGCCACGGACACCTCTTATTAAGACTCGAAAGATACGAGATCC 322
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 223 CGGAGAAGTTTGTGAAGAGCCACGGACATCTCTTAATAAGACTCGAAAGATACGAGATCC 282
Query 323 TCCTCCTCGAGTATCTCGTAGATCATCACAAGTATCTAGACCGATTTATCTCCGCCATAG 382
||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 283 TCCTCCTCGAGTATCTCGTCGATCCTCAGAAGTATCTAGACCGATTTATCTCCGCCATAG 342
Query 383 ATTTCTCCCACAGTCAAGGAAACAGTCTTCTTCTTCTCGACGCCAACGTTAGTCTTATAA 442
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 343 ATTTCTCCCACAGTCAAGGAAACAATATTCTTCTTCTCGACGCCAACGTTAATCTTATAA 402
Query 443 TTAAGCACTCTCATTTTAAATTTATCCACGAATTGAATATGTTTGTGTGTGTTGTAAATA 502
|||||||||||||||| |||||||||||||||| | | ||| |||||||||||| ||||
Sbjct 403 TTAAGCACTCTCATTTCAAATTTATCCACGAAT--A-TGTGTGTGTGTGTGTTGTGAATA 459
Query 503 TTCTAATAATTGGATGTTTATGAA-T---AA---GCCTAAAGGCACTGCT-TGATGTTTA 554
| |||||||| || |||||||||| | || |||||||||||||| | |||||||||
Sbjct 460 TCCTAATAATCGGGTGTTTATGAAGTCCGAATAAGCCTAAAGGCACTGGTGTGATGTTTA 519
Query 555 TATGGAATGGTTATTGAACAAATCATG 581
|||| ||||||||||||||||||||||
Sbjct 520 TATGAAATGGTTATTGAACAAATCATG 546
Score = 252 bits (136), Expect = 2e-66
Identities = 169/184 (92%), Gaps = 5/184 (3%)
Strand=Plus/Plus
Query 5 TCTGAAAGAAGACATGGAGGAGACGAGCGAGAGTCTTGCCTGCAGGTTAGAGAAATACAA 64
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 TCTGAAAGAAAACATGGAGGAGACGAGCGAGAGTCTTGCCT---GGTTAGAGAAATACGA 57
Query 65 ACTCATAGAGACATCGACCATCGACACAGCAGTGAGTTATCGACGCCTGATATTG-GATT 123
||||| |||||||||||||||||||||||| |||||||||| ||||||||| ||| | ||
Sbjct 58 ACTCAGAGAGACATCGACCATCGACACAGCGGTGAGTTATCAACGCCTGATGTTGAG-TT 116
Query 124 TTGACGAAGATTTGCTTAACAGGAGACGGGAGCTCGCAACTGCCTTTAATTCCTTCGTCT 183
||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||
Sbjct 117 TTGACGAAGATTTGCTTTATAGGAGACGCGAGCTCGCAACCGCCTTTAATTCCTTCGTCT 176
Query 184 GGCC 187
||||
Sbjct 177 GGCC 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21557907785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5