BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31990.3 Length=1712 Score E Sequences producing significant alignments: (Bits) Value Ahg491537 jgi|Araly1|491537|fgenesh2_kg.7__970__AT4G31990.2 2320 0.0 > Ahg491537 jgi|Araly1|491537|fgenesh2_kg.7__970__AT4G31990.2 Length=1565 Score = 2320 bits (1256), Expect = 0.0 Identities = 1450/1541 (94%), Gaps = 24/1541 (2%) Strand=Plus/Plus Query 29 AATGACT-ATCTTACCCCTATCAAGACAAGCCTGAGAAGTGAGAACAACTTCGTAGACAT 87 ||||||| || ||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 1 AATGACTAAT-TTACCCCTATCAAGACAAGCC-------T-AGAACAACTTCATAGACAT 51 Query 88 CGTCGTGTCTCTCTCTCGTTGAATCCTTGTTAATCTTTTTCTTCAA--TCTCTCGATCTG 145 |||||||||||||||||| |||||||||| ||| |||||||||| |||||||| || Sbjct 52 CGTCGTGTCTCTCTCTCGGTGAATCCTTG---ATC-TTTTCTTCAATCTCTCTCGACCTA 107 Query 146 ATCGTTATCGAAACCGCGCGATTCTAACCAAGTCCAGTTAATTTTGTGCTCCATAGC-GA 204 |||||| |||||||||| ||||||||||||||||||| | | |||| | || | || | Sbjct 108 ATCGTTTTCGAAACCGCACGATTCTAACCAAGTCCAG-TGA-TTTGAGATCTGT-GCAGC 164 Query 205 TT--CCATGGCTTCTTTAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATT 262 || |||||||| | |||||||||||||||||| || |||| ||||||||||||||| Sbjct 165 TTAATAATGGCTTCGTCAATGTTATCTCTCGGTTCAACACCTCTATTACCGCGCGAGATT 224 Query 263 AACAAGGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAGTCT 322 |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 225 AACAAGGATAAGCTAAAGCTTGGAACTTCTAATTCGAAGCCGTTCCTAAAAGCAAAGTCT 284 Query 323 TTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGGGTATAACTATG 382 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 285 TTTAGCAGGGTGACTATGACGGTTGCAGTCAAGCCTTCTCGTTTCGAGGGTATAACTATG 344 Query 383 GCTCCACCAGACCCTATTCTTGGAGTCAGTGAAGCATTCAAAGCTGACACTAACGGGATG 442 ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct 345 GCTCCACCAGACCCTATTCTTGGAGTCAGCGAAGCATTCAAAGCTGACAATAACGAGATG 404 Query 443 AAACTCAATCTTGGTGTTGGTGCTTATCGTACTGAGGAACTCCAGCCTTATGTGCTTAAT 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 AAACTCAATCTTGGTGTTGGTGCTTATCGTACTGAGGAACTCCAGCCTTATGTGCTTAAT 464 Query 503 GTTGTTAAAAAGGCGGAGAATTTGATGTTGGAGAGAGGAGATAACAAAGAGTATCTTCCA 562 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 GTTGTTAAAAAGGCAGAGAATTTGATGTTGGAGAGAGGAGATAACAAAGAGTATCTTCCA 524 Query 563 ATTGAGGGGTTGGCAGCATTCAACAAGGCTACTGCTGAGTTGCTATTTGGAGCTGGTCAT 622 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 ATTGAGGGTTTGGCAGCATTCAACAAGGCTACTGCTGAGTTGCTATTTGGAGCTGGTCAT 584 Query 623 CCTGTTATTAAGGAACAAAGAGTAGCAACAATTCAGGGTCTTTCGGGAACAGGTTCACTG 682 |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 585 CCTGTTATCAAGGAACAAAGAGTGGCAACAATTCAAGGTCTTTCGGGAACAGGTTCACTG 644 Query 683 CGATTAGCAGCGGCTCTTATAGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCA 742 |||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 645 CGATTAGCTGCAGCTCTTATAGAGCGTTATTTTCCTGGAGCAAAAGTTGTGATATCATCA 704 Query 743 CCAACCTGGGGTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATAC 802 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 705 CCAACCTGGGGTAATCACAAGAATATTTTCAATGATGCCAAAGTTCCGTGGTCCGAATAC 764 Query 803 CGCTACTATGATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG 862 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 765 CGCTACTATGATCCCAAGACAATTGGTTTGGACTTTGAGGGAATGATAGCAGATATAAAG 824 Query 863 GAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCCAACTGGAATT 922 ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 825 GAAGCTCCAGAAGGATCTTTCATTTTGCTTCATGGATGTGCTCACAACCCAACTGGAATT 884 Query 923 GACCCAACACCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCATATC 982 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 885 GACCCAACCCCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATC 944 Query 983 CCATTTTTCGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCA 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 CCATTTTTCGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCA 1004 Query 1043 TCTGTGAGATTATTTGCTGAGCGGGGAATGGAGTTTTTTGTTGCTCAGTCATATAGTAAA 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 TCTGTGAGATTATTTGCTGAGCGGGGAATGGAGTTTTTTGTTGCTCAGTCATATAGTAAA 1064 Query 1103 AATTTAGGT-TTGTATGCAGAAAGAATTGGGGCAATCAATGTCGTGTGCTCCTCAGCTGA 1161 ||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1065 AATTTAGGTCTT-TATGCAGAAAGAATTGGGGCAATCAATGTTGTGTGCTCATCAGCTGA 1123 Query 1162 TGCTGCTACAAGGGTCAAGAGCCAGTTGAAAAGGATTGCTCGGCCTATGTACTCGAATCC 1221 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1124 TGCTGCTACAAGGGTCAAGAGCCAATTGAAAAGGATTGCTCGGCCTATGTACTCGAACCC 1183 Query 1222 ACCAGTTCATGGGGCGAGAATCGTGGCCAATGTAGTGGGTGATGTAACTATGTTCAGTGA 1281 ||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||| Sbjct 1184 ACCAGTTCATGGGGCGAGAATTGTGGCAAATGTTGTTGGTGATGCAACCATGTTCAGTGA 1243 Query 1282 ATGGAAAGCAGAGATGGAAATGATGGCAGGAAGAATAAAGACGGTTAGACAAGAGCTGTA 1341 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1244 ATGGAAAGCAGAGATGGAAATGATGGCAGGAAGAATAAAGACGGTGAGACAAGAGTTGTA 1303 Query 1342 TGATAGCCTCGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAAT 1401 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 TGATAGCCTTGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAAT 1363 Query 1402 TGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGAGCGATAACATGACGGACAAATG 1461 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1364 TGGCATGTTCTCTTTCACCGGGCTAAACAAAGCTCAGAGCGATAACATGACGGACAAATG 1423 Query 1462 GCATGTGTATATGACTAAAGACGGGAGGATATCATTGGCCGGATTATCTCTGGCCAAATG 1521 ||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| ||||| Sbjct 1424 GCATGTGTACATGACTAAAGACGGGAGGATATCACTGGCTGGATTGTCTCTGGCGAAATG 1483 Query 1522 CGAGTATCTTGCTGATGCGATCATCGACTCATACCATAACG 1562 ||||| |||||||||||||||||||||||||||||||||| Sbjct 1484 TGAGTACCTTGCTGATGCGATCATCGACTCATACCATAACG 1524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64220153070 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5