BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32020.1 Length=1507 Score E Sequences producing significant alignments: (Bits) Value Ahg491533 jgi|Araly1|491533|fgenesh2_kg.7__966__AT4G32020.1 1670 0.0 > Ahg491533 jgi|Araly1|491533|fgenesh2_kg.7__966__AT4G32020.1 Length=1362 Score = 1670 bits (904), Expect = 0.0 Identities = 1210/1345 (90%), Gaps = 71/1345 (5%) Strand=Plus/Plus Query 107 ACCAAATCTGCCTTTCTCAATTAGCTATGGGCGTCGCTGTTCTAAATCCCCAGGATTGCT 166 ||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| Sbjct 44 ACCAAATCTGCCTTTCTCAATTAGCCATGGGCGTCGCCGTTCTAAATCCTCAAGATTGCT 103 Query 167 TGAAAGATCCATTCTCTCACATGAAACAACATCGTAATCCTAGCGCATGTCCCAACAGGC 226 |||||||||| |||||||||||||| || ||||| ||||| ||||||||||||||||||| Sbjct 104 TGAAAGATCCTTTCTCTCACATGAAGCACCATCGCAATCCCAGCGCATGTCCCAACAGGC 163 Query 227 AGAAGAAGACGGTCTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAGTCAATCCTCCA 286 |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 164 AGAAGAAGCCGGTTTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAATCAATCCGCCA 223 Query 287 GATC-T-T-CT--T-CTCCTCCTGTAGCGCCGCCGCTTCCTCCTCCTCGTGCGGCTGTCT 340 |||| | | || | |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 224 GATCTTCTCCTCCTCCTCCTCCTGTAGCGCCGCCGCTTCCTCCTCCTCGTGCGGCCGTCT 283 Query 341 CTGCTTTCGTTCCAAAGGGAACCCTTAAGAAGAGTCTTAGCAATACCGTTGCCGTTAGCC 400 || ||||| ||||||| |||||| |||||||||||| |||||| ||||| | |||||||| Sbjct 284 CTTCTTTCATTCCAAAAGGAACCGTTAAGAAGAGTCCTAGCAACACCGTAGTCGTTAGCC 343 Query 401 AGGTGAGAATCCTTAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTGG 460 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 344 AGGTGAGAATCCTGAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTTG 403 Query 461 AAATGTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGGGTC 520 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 404 AAAACTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGAGTC 463 Query 521 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 523 Query 581 TGACCTCGCCGCCTCCTAGCGATGTCCCGCTTCCAGC-TTTCTTCACGAAGAAGGCAACA 639 |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| Sbjct 524 TGACCTCGCCGCCTCCGAGCGATGTCCCGCTTCCAGCCTTT-TTCACGAAGAAGGCAACC 582 Query 640 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCACCGATCAtt 699 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 583 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCGCCGATCATT 642 Query 700 tttgattttttAAAAATCTCCGATGATCCAAATGGTTAC-CAAAGTGTTACATTTCCGTA 758 || |||||| |||| ||||||||||||||| | ||||| ||| |||||||| |||| | Sbjct 643 TTAGATTTTC-AAAA-TCTCCGATGATCCAACTTGTTACTCAA-GTGTTACAATTCCAAA 699 Query 759 TTACCGATCGTCCGATTCCGCCTGAAAACCGGAGATCTGCAACAAAATATAATCTCCAGA 818 |||| | ||| | | | | | | | || ||| ||||||||||||| Sbjct 700 --ACCG---GA--GAT-C----T-A---C---A-A---G-AA-AAA-TATAATCTCCAGA 733 Query 819 CGATGATGAATCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 878 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 CGATGA--A-TCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 790 Query 879 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 850 Query 939 TTAGGGTTTAGTGTTTGTGTAGGAGTATTTGTGTATAGA--CTTTTTACTAGTTTTCGTA 996 |||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||| Sbjct 851 TTAGGGTTTAGTGTTTGTGTAGGAGTATATGTGCATAGAGACTTTT-ACTAGTTTTCGTT 909 Query 997 TCTTTCTCTGTATCTTCGGGTTTTTAATTTCTGCTTAATCGTCAGGTTCTCTGGGTAAAT 1056 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 910 TCTTTCTCTGTATCTTTGGGTTTTTAATT-CTGCTTAATCGTCAGGTTCTCTGGGTAAAT 968 Query 1057 CATAGGTTGG--CTTT-TGTC------ATTTCGTCTGTGTCTTAAGTGGATTAGTTGGTC 1107 | ||| || | |||| |||| ||||||| ||||||| | ||| |||||| |||| Sbjct 969 CTTAGTTTCGTACTTTGTGTCTTTGTCATTTCGTTTGTGTCTGA-GTGAATTAGTAGGTC 1027 Query 1108 GTAAGACAAGTTATAGAGATGTGTTTACGGGTAAAGATGAAGCTTAGGTTTTGATGTAAT 1167 |||||||||||||||||||||||| ||| ||||| ||||| | |||||||| |||||||| Sbjct 1028 GTAAGACAAGTTATAGAGATGTGTCTACTGGTAA-GATGACGTTTAGGTTTCGATGTAAT 1086 Query 1168 CTTCTTCGGTTTTTCAATTCTCTGTATTTCT-CTATCTTTTTAGTTTATCAAGTTTAAGT 1226 |||||||||| || | ||||||||||||||| ||||| || | | |||||||| Sbjct 1087 CTTCTTCGGTATTGCGATTCTCTGTATTTCTTCTATCCTT--A----A----GTTTAAGT 1136 Query 1227 TTTATTTGGGGTTTCTTCTTCGTTTGGGTATCTTTCTGTTTTTCCTTAAGGTTCTTCGTT 1286 ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| Sbjct 1137 TTTATTTGGGGTTTCTTCTTCATTTGGGTCTCTTTCTGTTGTTCCTTAAGGTTCTTCGTT 1196 Query 1287 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTAATTACTGGTTAGATGAAT 1346 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1197 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTATTTACTGGTTAGATGAAG 1256 Query 1347 CTTAAGGTTTCCATGTAA-CCGTTTGTACTACAA-TTCTCTGTACTTCTCTATCTTTAAT 1404 |||||||||||||||||| || || ||||||||| ||||||||||||||||||||||||| Sbjct 1257 CTTAAGGTTTCCATGTAATCC-TT-GTACTACAAATTCTCTGTACTTCTCTATCTTTAAT 1314 Query 1405 ATTATCGAATTTAAGTTTTATCTTT 1429 | ||||||||||||||||||||||| Sbjct 1315 ACTATCGAATTTAAGTTTTATCTTT 1339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56411652845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5