BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32040.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328525 jgi|Araly1|328525|fgenesh1_pm.C_scaffold_7000752 1912 0.0
> Ahg328525 jgi|Araly1|328525|fgenesh1_pm.C_scaffold_7000752
Length=1140
Score = 1912 bits (1035), Expect = 0.0
Identities = 1103/1137 (97%), Gaps = 0/1137 (0%)
Strand=Plus/Plus
Query 63 ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTC 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTG 60
Query 123 ACCGATCAATCACAGCAACCTCCGCCGCAGCGTCACTTCTCTGAAACACCTTCGCTTGTC 182
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGATCAATCACAGCAACCGACGTCGCAGCGTCACTTCTCTGAAACACCTTCGCTTGTC 120
Query 183 ACCGCCAGTTTCCTCAACCTCCCTACCACCCTTACCACTGCGGATTCCGATCTCGCTCCT 242
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 ACCGCCAGCTTCCTCAACCTCCCTACCACAATAACCACTGCGGATTCCGATCTCGCTCCT 180
Query 243 CCGCACCGCAACGGAGACAATTCCGTTGCTGATACAAACCCACGCTGGCTCTCCTTTCAT 302
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CCGCACCGCAACGGAGACAATTCCGTTGCTGATACAAACCCACGGTGGCTCTCCTTTCAT 240
Query 303 TCGGAGATGCAAAATACTGGAGAAGTACGTTCTGAAGTTATCGACGGAGTCAACGCCGAT 362
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ACGGAGATGCAAAATACTGGAGAAGTTCGTTCTGAAGTTATCGACGGAGTCAACGCCGAT 300
Query 363 GGTGAAACGATACTCGGCGTTGTAGGAGGTGAAGATTGGCGGAGTGCTAGCTATAAGGCG 422
|||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 GGTGAAACGATACTTGGTGTTGTTGGAGGTGAAGATTGGCGGAGCGCTAGCTATAAGGCG 360
Query 423 GCGATTTTAAGACATCCGATGTACGAGCAGCTTCTTGCGGCTCACGTGGCTTGCCTTAGG 482
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 361 GCGATTTTGAGACATCCGATGTATGAGCAGCTTCTTGCGGCTCACGTGGCTTGCCTTCGG 420
Query 483 GTTGCGACTCCCGTTGACCAGATTCCGAGGATCGATGCTCAGCTCAGTCAGTTGCATACC 542
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 421 GTTGCGACTCCTGTTGACCAGATTCCGAGGATCGATGCTCAGCTTAGCCAGTTGCATACC 480
Query 543 GTCGCCGCGAAATACTCCACTCTTGGTGTGGTTGTTGACAACAAGGAACTTGATCATTTC 602
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GTCGCCGCGAAATACTCCACTCTTGGTGTGGTTGTGGACAACAAGGAACTTGATCATTTC 540
Query 603 ATGTCACATTATGTTGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGTCACATTATGTTGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGT 600
Query 663 GTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATTGAACAATCACTGCAATCCCTA 722
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 601 GTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATCGAGCAATCACTGCAATCCTTG 660
Query 723 ACTGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGTCGGATGATGAAGATGATAAT 782
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 ACGGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGTCGGAAGATGAAGATGATAAT 720
Query 783 CAAGTAGAGAGCGAGGTGAACATGTTTGATGGAAGTTTGGACGGTTCAGATTGCTTGATG 842
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 CAAGTAGAGAGCGAGGTTAACATGTATGATGGAAGTTTGGACGGTTCAGATTGCTTGATG 780
Query 843 GGGTTTGGTCCTCTTGTTCCAACCgagagagagagaTCTTTGATGGAACGTGTGAAGAAA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGGTTTGGTCCTCTTGTTCCAACCGAGAGAGAGAGATCTTTGATGGAACGTGTGAAGAAA 840
Query 903 GAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAG 900
Query 963 ATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCAGGAGATACGACTTCTGTACTCAAAGAA 1022
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 ATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCGGGAGATACGACTTCTGTACTCAAAGAG 960
Query 1023 TGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGGAAGATAAGGCAAAACTGGTT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGGAAGATAAGGCAAAACTGGTT 1020
Query 1083 CAAGAAACCGGTTTGCAGTTGAAACAGATCAACAATTGGTTCATCAACCAGAGGAAAAGA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAAGAAACCGGTTTGCAGTTGAAACAGATCAACAATTGGTTCATCAACCAGAGGAAAAGA 1080
Query 1143 AACTGGAACAGCAACTCTTCCACGTCATCTACTCTCACCAAGAACAAACGTAAACGG 1199
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 AACTGGAACAGCAACTCTTCCACGTCATCTACTCTCAGCAAGAACAAACGTAAACGG 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5