BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32150.1 Length=1182 Score E Sequences producing significant alignments: (Bits) Value Ahg944750 jgi|Araly1|944750|scaffold_700979.1 1404 0.0 > Ahg944750 jgi|Araly1|944750|scaffold_700979.1 Length=884 Score = 1404 bits (760), Expect = 0.0 Identities = 853/896 (95%), Gaps = 14/896 (2%) Strand=Plus/Plus Query 207 GGCAGGGGGATCGACGACGGAGATGGCGATTCTGTACGCCCTCGTGGCTCGTGGCACGGT 266 |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 GGCAAGGGGA-CGACGACGGAGATGGCGATTCTGTACGCACTCGTGGCTCGTGGCACGGT 59 Query 267 GGTTCTTTCTGAGTTCACCGCCACCTCTACGAATGCGAGCACCATCGCCAAACAGATCCT 326 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 60 TGTTCTTTCTGAGTTCACCGCCACGTCTACGAATGCGAGCACCATCGCCAAACAGATCCT 119 Query 327 CGAGAAGGTCCCTGGAGACAACGACAGCAACGTCTCCTACTCTCAGGATCGTTACGTCTT 386 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 CGAGAAGGTCCCTGGAAACAACGACAGCAACGTTTCCTACTCTCAGGATCGTTACGTCTT 179 Query 387 CCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCCGAAGAAACCGCCGGAAG 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCCGAAGAAACCGCCGGAAG 239 Query 447 GAGAATTCCTTTTGCCTTTTTGGAGGATATTCACCAGAGATTCGTACGGACTTATGGCAG 506 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 240 GAGAATTCCTTTTGCCTTTCTGGAGGATATTCACCAGAGATTCGTACGGACGTATGGCAG 299 Query 507 GGCTGTTCATACAGCACTAGCTTATGCAATGAATGAGGAATTCTCTAGAGTTCTCAGTCA 566 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GGCTGTTCATACAGCACAAGCTTATGCAATGAATGAGGAATTCTCTAGAGTTCTCAGTCA 359 Query 567 GCAGATTGACTATTACTCTAATGATCCTAATGCCGATAGGATTAATCGTATTAAGGGTGA 626 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 360 GCAGATTGAGTATTACTCTAATGATCCTAATGCCGATAGGATTAATCGGATTAAGGGTGA 419 Query 627 AATGAATCAGGTGCGGGGTGTCATGATAGAAAACATTGACAAAGTCCTAGATAGAGGTGA 686 |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct 420 AATGAATCAGGTGCGGGGTGTCATGATAGAGAATATTGACAAAGTTCTAGATAGAGGTGA 479 Query 687 ACGTTTGGAGCTTCTTGTCGATAAAACCGCCAATATGCAGGGGAATACATTCCGGTTCAG 746 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 480 ACGTTTGGAGCTTCTTGTCGATAAAACCGCCAATATGCAGGGAAATACATTCCGTTTCAG 539 Query 747 AAAGCAAGCTCGTCGTTTTAGAAGCAACGTCTGGTGGAGAAACTGCAAGCTCACGGTCCT 806 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 AAAGCAAGCTCGTCGTTTTAGAAGCAACGTCTGGTGGAGAAATTGCAAGCTCACGGTCCT 599 Query 807 CTTAATACTACTACTACTGGTGATCATATACATTGCAGTGGCCTTTCTCTGCCACGGACC 866 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 CTTAATACTACTACTACTGGTGATCATATACATAGCAGTGGCCTTTCTCTGCCACGGACC 659 Query 867 TACTCTACCATCTTGCATTTAAGTGCATCTGTCTCTTAAGGAATCCATCCCGATTCTGCG 926 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 660 TACTCTACCATCTTGCATTTAAGTGCATCAGTCTCTTAAGGAATCCATCCCGATTCTGCG 719 Query 927 CGTTGCCACGACTT-TTTATCTCCTCATCTGATTGTAAACCTTGTGTTT-TCCTGAGCAT 984 |||||||| |||| ||| |||||||| |||||||||||| || ||||| | | |||| | Sbjct 720 TGTTGCCACAACTTCTTT-TCTCCTCACCTGATTGTAAACGTTCTGTTTCTTC-GAGC-T 776 Query 985 TTTCATGTGGCTTAAAAAGCTTATGTTTCCAACTCACGTATATGAAAAAGTATACTTATT 1044 ||| | | ||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 777 TTT--T-T-----AAAAAGCTTATGTTTTCAACTCACGTATATGAAGAAGTATACTTATT 828 Query 1045 TATAGAGCAATGTAAAAGCTCATTGCTTTGCGAAGTGTGTGAATCTTTGTTGACAT 1100 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 829 TATAGAGCAATGTAAAAGCTCATTGCTTTGCAAAGTGTGTGAATCTTTGTTGTCAT 884 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44108214969 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5