BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32190.1
Length=2692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944743 jgi|Araly1|944743|scaffold_700972.1 3666 0.0
> Ahg944743 jgi|Araly1|944743|scaffold_700972.1
Length=2377
Score = 3666 bits (1985), Expect = 0.0
Identities = 2201/2306 (95%), Gaps = 12/2306 (1%)
Strand=Plus/Plus
Query 184 TCTCAGGCCATTCGCTTGAATCTTGCTTCCTTCTCCTCTCCCTCTCCCTGCGATTATTGT 243
||||||||||||||| ||||||||||||||| |||||||| |||||||| | | ||||||
Sbjct 39 TCTCAGGCCATTCGCCTGAATCTTGCTTCCTACTCCTCTCTCTCTCCCTACCAGTATTGT 98
Query 244 TTGACAAGAGTAGTAAACCATAAGCAGAAGAGTCTTGTCGCATTCCCGAGCATTACAAGG 303
| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 99 TCGACAAGAGTAGCAAACCAGAAGCAGAAGAGTCTTGTCGCATTCCCGAGCATTAGAAGG 158
Query 304 AGAAAGAGACAT-CTTTTACTGAGTGTTCAATCAGTCTTGCACAATACAAGACCCAACAT 362
| |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 159 ACAAAGAGACATGC-TTTACTAAGTGTTCAATCAGTCTTGCACAATACAAGACCCAACAT 217
Query 363 CAACGACAATGGCTCAGCTGAGTCTGCAAATGTTCTTTTCGATAAATTATTTGCTCGGAC 422
||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 218 CAATGATAATGGAACAGCTGAGTCTGCTAATGTTCTTTTCGATAAATTATTTGCTCGGAC 277
Query 423 ACACAGATTGGAGAGACAAACCAATCAACACTCGGTTTATCCTGACGATGATGATCTCCC 482
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 278 ACAGAGATTGGAAAGACAAACCAATCAACACTCGGTTTATCCTGACGATGATGATCTGCC 337
Query 483 CTATTCAAACCTTGGCGTGCTTGAGTCTGACCTTGAGGCTGCGCTAGTGGCCTTGTTGAA 542
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 338 CTATTCAAACATTGGGGTGCTTGAGTCTGACCTTGAGGCTGCGCTAGTGGCTTTGTTGAA 397
Query 543 AAGGGAAGAGGACCTGCACGATGCTGAGAGGAAGCTTCTCTCTGACAAAAATAAACTTAA 602
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 398 AAGGGAAGAGGACTTGCAGGATGCTGAGAGGAAGCTTCTCTCTGATAAAAATAAACTAAA 457
Query 603 CCGGGCAAAGGAGGAGTTAGAAAAACGTGAGAAAACAATCTCTGAAGCTTCGTTGAAGCA 662
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 458 CCAGGCAAAGGAGGAGTTAGAAAAACGTGAGAAAACAATCTCTGAAGCTTCTTTGAAGCA 517
Query 663 TGAGAGTCTACAAGAGGAGCTGAAGCGGGCAAATGTGGAGTTAGCTTCTCAAGCCAGGGA 722
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 518 TGAGAGTCTACAAGAGGAGCTGAAGCGGGCTAATGTCGAGTTAGCTTCTCAAGCCAGGGA 577
Query 723 GATAGAAGAGTTAAAGCATAAGCTAAGGGAAAGAGACGAGGAACGTGCTGCTTTGCAATC 782
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 578 GATAGAAGAATTAAAGCATAAACTAAGGGAAAGAGACGAGGAACGTGCTGCTTTGCAATT 637
Query 783 GTCCTTGACTTTGAAAGAGGAAGAGCTAGAGAAGATGCGTCAAGAGATTGCAAACAGAAG 842
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 638 GTCCTTGACTTTGAAAGATGAAGAGCTAGAGAAAATGCGTCAAGAGATTGCAAATAGAAG 697
Query 843 CAAGGAGGTTTCTATGGCTATTTCTGAATTTGAAAGCAAGTCACAACTCTTAAGCAAAGC 902
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 698 CAAGGAGGTTTCTGTGGCCATTTCTGAATTTGAAAGCAAGTCACAACTCTTAAGCAAAAC 757
Query 903 CAACGAAGTTGTCAAGAGACAAGAAGGTGAAATATATGCACTTCAGAGAGCTCTT-GAGG 961
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 758 CAACGAAGTTGTCAAGAGACAAGAAGGTGAAATACATGCACTTCAGAGAGC-CTTAGAGG 816
Query 962 AGAAGGAAGAAGAATTAGAGATTTCTAAGGCTACgaagaaacttgaacaagaaaagctta 1021
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 817 AGAAGGAAGAAGAACTAGAGATTTCTAAGGCTACGAAGAAACTTGAACAAGAAAAGCTCA 876
Query 1022 gagaaacagaagccaacttgaagaaacagacagaagaGTGGCTGATAGCCCAGGATGAAG 1081
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 877 GAGAAACAGAAGCCAACTTGAAGAAGCAGACAGAAGAGTGGCTGATAGCCCAGGATGAAG 936
Query 1082 TGAATAAGCTTAAAGAGGAAACCGTGAAACGTTTAGGAGAAGCCAATGAAACCATGGAGG 1141
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 937 TGAATAAGCTTAAGGAGGAAACAGTGAAACGCTTAGGAGAAGCCAATGAAACCATGGAGG 996
Query 1142 ACTTCATGAAAGTGAAAAAGCTTCTGACTGATGTAAGATTCGAGCTTATTTCTTCTCGGG 1201
||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 997 ACTTCTTGAAAGTGAAAAAGCTACTGACTGATGTGAGATTCGAGCTTATTTCTTCTCGGG 1056
Query 1202 AAGCTTTGGTATTTTCCAGGGAGCAAATGGAAGAAAAAGAGCTACTATTGGAAAAACAAT 1261
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1057 AAGCTTTGGTATTTTCCAGGGAGCAAATGGAAGAAAAAGAGCTACTATTAGAAAAACAAT 1116
Query 1262 TGGAGGAACTCGAGGAACAGAGGAAAAGTGTGTTGTCATATATGCAAAGCTTGAGGGATG 1321
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TGGAAGAACTCGAGGAACAGAGGAAAAGTGTGTTGTCATATATGCAAAGCTTGAGGGATG 1176
Query 1322 CGCACACTGAAGTTGAAAGTGAGAGAGTAAAGCTCAGAGTTGTTGAGGCTAAAAATTTTG 1381
| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1177 CTCACACTGAAGTAGAGAGTGAGAGAGTAAAGCTCAGAGTTGTTGAGGCTAAGAATTTTG 1236
Query 1382 CGCTTGAGCGGGAAATATCGGTCCAAAAAGAATTGCTGGAGGATTTACGAGAGGAGTTGC 1441
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1237 CGCTTGAGCGGGAAATATCGGTCCAAAAAGAACTGCTGGAGGATTTACGAGAGGAGTTGC 1296
Query 1442 AGAAAGAGAAACCATTGTTGGAGCTAGCTATGCATGATATATCCGTTATTCAAGATGAGC 1501
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1297 AGAAAGAGAAACCATTGTTGGAGCAAGCTATGCATGATATATCCGTTATTCAAGATGAGC 1356
Query 1502 TTTACAAAAAAGCTAATGCGTTTCAGGTATCACAAAATCTACTTCAGGAGAAAGAGTCAA 1561
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1357 TTTACAAAAAAGCTAACGCGTTTCAGGTATCACAGAATCTACTTCAGGAGAAAGAGTCAA 1416
Query 1562 GTTTGGTGGAGGCCAAACTAGAGATTCAGCATCTGAAGTCCGAACAGGCTTCTCTAGAAC 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GTTTGGTGGAGGCCAAACTAGAGATTCAGCATCTGAAGTCCGAACAGGCTTCTCTAGAAC 1476
Query 1622 TATTACTGCAAGAAAAGGATGAAGAACTCGCTGAAGCTCGAAATAAATTGGGAGAAGTGA 1681
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 1477 TATTACTGCAAGAAAAGGATGAAGAACTCACGGAAGCTCGAAATAAATTGGAAGAAGTGA 1536
Query 1682 ACCAGGAGGTAACAGAGCTAAAGGCACTTATGATCAGTAGAGAAGATCAGCTTATGGAGG 1741
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1537 ACCGGGAGGTAACAGAGCTAAAGGCACTTATGGTCAGTAAAGAAGATCAGCTTATGGAGG 1596
Query 1742 CAACTGAGATGCTGAAGGAGAAAGATGTCCACCTTCACAGAATAGAAGGTGAGTTGGGCA 1801
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 CAACTGAAATGCTGAAAGAGAAAGATGTCCACCTTCACAGAATAGAAGGTGAGTTGGGCA 1656
Query 1802 GTTCCAAGCTGAAAGTCACTGAAGCTGAAATGGTGGTGGAAAGAATTGCAGAATTGACGA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 GTTCCAAGCTGAAAGTCACTGAAGCTGAAATGGTGGTGGAAAGAATTGCAGAATTGACGA 1716
Query 1862 ACAGACTGCTTATGTCAACCACC-AACGGTCAAAATCAGAATGCAATGAGGATTAACAAT 1920
|||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1717 GCAGATTGCTTATGTCAACCACCGAA-GGTCAAAATCAGAACGCAATGAGGATTAACAAT 1775
Query 1921 GAGATAAGCATTGACTCAATGCAGCAACCACTAGAGAAACCTCATGATGATTACGGAATG 1980
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 GAGATAAGCTTTGACGCAATGCAGCAACCACTAGAGAAACCTCATGATGATTACGGAATG 1835
Query 1981 GAGAACAAACGGCTGGTGATGGAGTTAAGCTTCACCAGAGAAAATCTACGGATGAAAGAA 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 GAGAACAAACGGCTGGTGATGGAGTTAAGCTTCACCAGAGAAAATCTACGGATGAAAGAA 1895
Query 2041 ATGGAAGTTCTAGCGGTGCAGAGGGCTTTGACATTTAAAGACGAAGAGATCAACGTGGTC 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 ATGGAAGTTCTAGCGGTGCAGAGGGCTTTGACATTTAAAGACGAAGAGATCAACGTGGTC 1955
Query 2101 ATGGGAAGATTAGAAGCCAAGGAGCAGGAACTCAAGAAATTGAAAGAAGAAACGATCAAT 2160
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1956 ATGGGAAGATTAGAAGCCAAGGAGCGGGAACTCAAGAAACTGAAAGAAGAAACGATCAAT 2015
Query 2161 GACAGTGAAGATTTGAAAGTGCTATATGCCTTGGCACAAGAGAGAGTCGGGGAAAAAACA 2220
||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||
Sbjct 2016 GACAGTGAAGATTTGAAAGTGCTCTATGCCTTGGCACAAGAGAGAATAGGGGAGAAAACA 2075
Query 2221 ATGGGTGATCTGGCCATAGAGATGCTTCAGCTTGAGGCAGCT-AACCTTGAAGTTGAAGC 2279
|||||||| || |||||||||| ||||||||||||||| ||| ||| |||||||||||||
Sbjct 2076 ATGGGTGAGCTAGCCATAGAGAAGCTTCAGCTTGAGGCGGCTCAAC-TTGAAGTTGAAGC 2134
Query 2280 TGCGACCAGTGCATTACAGAAGCTTGCAAAAATGAGCACGGAACTGT-TAACTCAAGCTG 2338
||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 2135 TGCAACCAGTGCATTACAGAAGCTTGCAGAAATGAGCACGGAACT-TCTAACTCAAGCTG 2193
Query 2339 ACATGAGCATTGAGGCCGACACAACTCACACTGTAATGCCAGAGAGAGGGTATTCAGAAG 2398
|||||||||||||||||||| ||||| ||| |||||||||||||| ||||||| ||||||
Sbjct 2194 ACATGAGCATTGAGGCCGACCCAACTTACATTGTAATGCCAGAGAAAGGGTATCCAGAAG 2253
Query 2399 GAAGTAATGAGTGTCTTG-GTGAGGTAAAAACAGAAGTTGTCAGGCTCTGGTCCTTGACA 2457
||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2254 GAAGTAATGGGTGTATTGCG-GAGGTAAAAACAGAAGTTGTCAGGCTCTGGTCCTTGACA 2312
Query 2458 GAGAAACTCCTGGAGAACGCAGGAAT 2483
||||||||||||||||| ||||||||
Sbjct 2313 GAGAAACTCCTGGAGAATGCAGGAAT 2338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101548593170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5