BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32260.1 Length=1034 Score E Sequences producing significant alignments: (Bits) Value Ahg491508 jgi|Araly1|491508|fgenesh2_kg.7__941__AT4G32260.1 1417 0.0 > Ahg491508 jgi|Araly1|491508|fgenesh2_kg.7__941__AT4G32260.1 Length=933 Score = 1417 bits (767), Expect = 0.0 Identities = 883/936 (94%), Gaps = 19/936 (2%) Strand=Plus/Plus Query 1 AATCTGACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AATCTCACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60 Query 61 AGCAAATCTCTTCTCTCTC-C-C-ATTCGTCTCCAAAGAGATT------A-CAG-TTTTG 109 ||||||||||||||||||| | | |||||||||||||||||| | ||| ||||| Sbjct 61 AGCAAATCTCTTCTCTCTCTCTCTCTTCGTCTCCAAAGAGATTACAGAGATCAGTTTTTG 120 Query 110 AGCATTTCTCATCTCTCGAAGCTCTTCTCT--GTGTGTGTGGCGATGGCTGCTAATTCGA 167 | |||||||||||||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 121 AACATTTCTCATCTCTCGAAGCTCTTCTCTCAGTGTGTGTAGCCATGGCTGCTAATTCGA 180 Query 168 TAATGGCTTCCTCCAAACCCCTAATCTCCCTGTCAtccaaccaacaaccaaaccgagtcc 227 | |||||||| |||||||| ||||||||||| || |||||||||||||||| |||||||| Sbjct 181 TTATGGCTTCTTCCAAACCACTAATCTCCCTCTCCTCCAACCAACAACCAAGCCGAGTCC 240 Query 228 aaattcccaaattcgccaaacttccccaaattcccaaatCCCTCACTTCCTCCACCGATC 287 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 241 AAATTCCCAAATTCGCCAAACTTCCCCAAATTCCCAAATCCATCACTTCCTCCTCCGATC 300 Query 288 TCCGTAGCAAAGCACTATCACTCTCCTCCGCCACCGCCAAATCCTTAGCTTTAATCGCCG 347 ||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| Sbjct 301 TCCGTAGCAAAGCTCTATCACTCTCTTCCGCCACCGCCAAATCTTTAGCTCTAATCGCCG 360 Query 348 CTTTCGCTCCTCCGTCGATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 407 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCTTCGCTCCTCCGTCAATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 420 Query 408 TCACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCTCTCGACAAGGTCT 467 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 421 TAACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCGCTCGACAAGGTCT 480 Query 468 ATTACTCTCCGCTTGGTAACTTCATGGATCAAAGAGACGCTTCCATCAAAGAGAAGCTCG 527 |||||||||||||||| || |||||||| || |||||||||||||||||||||||||||| Sbjct 481 ATTACTCTCCGCTTGGGAATTTCATGGACCAGAGAGACGCTTCCATCAAAGAGAAGCTCG 540 Query 528 CGAGTGTTAAGGACACTTCGACTGAAGTAAAGGAGCTCGATGAGCAAGCCGCCGCCGTGA 587 |||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||| Sbjct 541 CGAGTGTTAAAGACACTTCGGCTGAGGTAAAGGAGCTCGATGAGAAAGCCGCCGCCGTGA 600 Query 588 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 660 Query 648 TTGAAGTCGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAAGAGCTAAAAGAAG 707 |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 661 TTGAGGTTGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAGGAGCTAAAAGAAG 720 Query 708 CTTTGGCGAGCTTGGAG-AGTCAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 766 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTTTGGCGAGCTTGGAGAAG-CAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 779 Query 767 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 839 Query 827 ACTGTGTAATTCTCTGTCTCTCTATCT--CAAAACTTATTTACAAGAAATTACTGTAAAt 884 ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 840 ACTTTGTAATTCTCTGTCTCTCTCTCTGTCAAAACTTATTTACAAGAAATTACTGTAAAT 899 Query 885 ctcttcttcttcttcttctctgtttcttGGATTGTT 920 |||||||| | ||||||||||||||||||||||||| Sbjct 900 CTCTTCTT-T-CTTCTTCTCTGTTTCTTGGATTGTT 933 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38466023253 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5