BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32272.2 Length=1619 Score E Sequences producing significant alignments: (Bits) Value Ahg491505 jgi|Araly1|491505|fgenesh2_kg.7__938__AT4G32272.1 1786 0.0 > Ahg491505 jgi|Araly1|491505|fgenesh2_kg.7__938__AT4G32272.1 Length=1404 Score = 1786 bits (967), Expect = 0.0 Identities = 1060/1105 (96%), Gaps = 6/1105 (1%) Strand=Plus/Plus Query 388 TTATGCTTGTGCTGTTCAATAAAGCAGCTCTGTCTTCCTATGATTTTCCGTGTGTGAACG 447 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 298 TTATGCTTGTGCTGTTCAATAAAGCAGCTCTATCTTCCTATGATTTCCCGTGTGTGAACG 357 Query 448 TTATCACGCTATTCCAGATGGTTTCCTCTAGCTTATTTCTATATGCTTTGAGGCGCAGGA 507 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 358 TTATCACGCTATTCCAGATGGTTTCCTCTAGCTTGTTTCTATATGCCTTGAGGCGCAGGA 417 Query 508 AGATCATCTCTTTCACAGCTGCTGATTCTTTTTCTATTGATAGTGCCTCAACCTTTGTGC 567 |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 418 AGATCATCTCTTTCACAGCTGCTGATTCTTTTTCTATTGATAATGCCTCAAATTTTGTGC 477 Query 568 CAGTGAAGACATTGTTTCACACCCTTCCTCTAGCAATAGCATATCTTTTGTACATGCTAG 627 |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| Sbjct 478 CAGTGAAGACATTGTTTCACACCCTTCCTCTATCAATAGCCTATCTTATGTACATGCTAG 537 Query 628 CCTCTATGGCATCTGTTAGAGGGGTAAATGTTCCCATGTATACCACGCTTAGGCGTACTA 687 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 538 CCTCTATGGCATCTGTCAGAGGGGTAAATGTTCCCATGTATACCACACTTAGGCGTACTA 597 Query 688 CTGTGGCATTTACTATGGTGATTGAGTACATGCTCACAGGTCAGAGATATACACGGTCTA 747 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CGGTGGCATTTACTATGGTGATTGAGTACATGCTCACAGGTCAGAGATATACACGGTCTA 657 Query 748 TCATTGGAAGTGTTGGTATTATCTTGCTTGGCGCATTTTTTGCTGGAGCTAGGGACTTGT 807 |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| Sbjct 658 TCATTGGAAGTGTTGGCGTTATCCTGCTTGGAGCATTTTTTGCTGGAGCTAGGGACTTGT 717 Query 808 CATTTGACTTTTATGGATATGGTGTTGTTTTCTTAGCCAACATATCAACAGCAGTATATC 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CATTTGACTTTTATGGATATGGTGTTGTTTTCTTAGCCAACATATCAACAGCAGTATATC 777 Query 868 TAGCAACCATTGCCCGTACTGGTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGT 927 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 778 TAGCAACCATTGCCCGTACTGGGAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGT 837 Query 928 CCAATGGAATTATATGCGGACCTATATTGATGATTTGGACATTTATTTGCGGTGACTTGG 987 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 838 CCAATGGAATTATATGCGGACCTATATTGATGATTTGGACATTTATTTGCGGCGACTTGG 897 Query 988 AGAAGACAATTAACTTTCCTCACCTCTTAACTCCTGGTTTCATGGTTGTATTACTCTGCT 1047 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 898 AGAAGACAATTAACTTTCCTCACCTCTTATCTCCTGGTTTCATGGTTGTATTACTCTGCT 957 Query 1048 CGTGCGTGCTGGCTTTCGTCTTAAACTACTGCATTTTCCTTAACACCACTCTCAATTCAG 1107 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 958 CGTGCGTGCTGGCTTTCTTCTTAAACTACTGCATTTTCCTTAACACCACTCTCAACTCAG 1017 Query 1108 CTTTGACGCAGACAATTTGTGGCAATATGAAGGATCTATTCACGGTTGGACTAGGCTGGA 1167 || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1018 CTCTGACGCAAACAATTTGTGGCAATATGAAGGATCTATTCACGGTTGGACTTGGCTGGA 1077 Query 1168 TGCTCTTTGGAGGACTCCCATTCGACCTGATGAATGTGATTGGACAGCTTTTTGGTTTCT 1227 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1078 TGCTCTTTGGAGGACTCCCATTCGACCTGATGAATGTGATTGGACAGCTTCTTGGTTTCT 1137 Query 1228 TCGGGTCAGGTTTATATGCATATTATAAGATCATCGGGAGGTAACAAGTCCAAAACAAAG 1287 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1138 TCGGGTCAGGTTTATATGCATATTATAAGATCATCGGGAGGTAACAACTCCAAAACAAAG 1197 Query 1288 AAAAGCCAA-AGAAAACATGAGT----GGCCTAGTGATGATAAAGGCTCATTAGTTTAAG 1342 || |||||| | ||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1198 AAGAGCCAACA-AAAACATGAGTTTAAGGACTAGTGATGATAAAGGCTCATTAGTTTAAG 1256 Query 1343 GAAAAGTTGTTGACTAGTAGTGTTCAAGTGGAGATAGAGTGTTGAGCTTTTGGTTTTGGA 1402 |||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||| | Sbjct 1257 GAAAAGTTGTAGACCAGTAATGTTCAAGTGGAGATAGAGTGTTCAGCTTTTGGTTTTGCA 1316 Query 1403 GGTGACTTTAGAGTAGTATTAATAATGAAAGGCCTAATTTTTTGAACTTGCGTCTTGTTC 1462 || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1317 AGTAACTTTAGAGTAGTATTAATAATGCGAGGCCTAATTTTTTGAACTTGTGTCTTGTTC 1376 Query 1463 TTCTTCAGTTTTCAACAAGGCGAAA 1487 ||||||||||||||||||||||||| Sbjct 1377 TTCTTCAGTTTTCAACAAGGCGAAA 1401 Score = 206 bits (111), Expect = 6e-52 Identities = 190/223 (85%), Gaps = 25/223 (11%) Strand=Plus/Plus Query 131 agagtagacggcgaacgaagacgaagacgaggagCGTGGAGAGAGTCTACCTCTCTCGAC 190 |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 93 AGAG-AGACGGCGAACGAAGAAGAAGACGAAGAGCGTGGAGAGAGTCTACCTCTCTCGAC 151 Query 191 GATGAG------GA--A-TAATCCTGTCCTTCCGGTTTCCGATCCTCCCCTCGCCGGTGA 241 ||||| || | ||| |||||||||||||||||||||||||| ||||||||||| Sbjct 152 GATGAATTCCATGAGGACTAACCCTGTCCTTCCGGTTTCCGATCCTCCTCTCGCCGGTGA 211 Query 242 GAATGATAGCGATGGTAAAGGTGTCGATGATCGGCTTTTCAAAGGATCTGCCATGACCAA 301 || || | ||| | || |||||||||||||||||||||| ||||||||||| Sbjct 212 -AA--AT-G--ATG-T-----TG---ATGATCGGCTTTTCAAAGGATCCGCCATGACCAA 256 Query 302 ACGTGGAGCTTATGCTGCTCTTTCTTACATGGCTTGTGCTGTT 344 |||||||||||| |||||||||||||||||||| ||||||||| Sbjct 257 ACGTGGAGCTTACGCTGCTCTTTCTTACATGGCCTGTGCTGTT 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60677760285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5