BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32295.1 Length=966 Score E Sequences producing significant alignments: (Bits) Value Ahg491499 jgi|Araly1|491499|fgenesh2_kg.7__932__AT4G32295.1 1399 0.0 > Ahg491499 jgi|Araly1|491499|fgenesh2_kg.7__932__AT4G32295.1 Length=958 Score = 1399 bits (757), Expect = 0.0 Identities = 897/961 (93%), Gaps = 24/961 (2%) Strand=Plus/Plus Query 25 tctctctctcATAGAAAAGGAAGTGGTGGAAG--ATGCCGAGGCCAGGGCCAAGACCGTA 82 ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTGATAGAAAAGGAAGTGGTGGAAGATATGCCGAGGCCAGGGCCAAGACCGTA 60 Query 83 CGACTGTATCAGAAGAGCTTGGCATAGTGACAGACACCAACCCATGAGGGGTTTGCTCAT 142 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 CGACTGTATCAGAAGAGCTTGGCATAGTGACATACACCAACCCATGAGGGGTTTGCTCAT 120 Query 143 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAGGAAAAACACAGA 202 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 121 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAAGAAGAACACAGA 180 Query 203 ATGGCAAGAGAAGCTCCCTGTTGTTGTCTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 262 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 181 ATGGCAAGAGAAGCTCCCTGTTGTTGTTTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 240 Query 263 CAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 322 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 300 Query 323 CAACACAATCATACGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 382 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAACACCATCATTCGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 360 Query 383 TGAAGCTGCATTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 442 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGAAGCTGCTTTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 420 Query 443 TAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATGTTGTCCCAAGT 502 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 421 AAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATTTTGTCCCAAGT 480 Query 503 ATTCATGAAACC-AA-A-CAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAATTG 559 |||||||||||| || | ||||||||||||||||||||||||||||||||||||||| || Sbjct 481 ATTCATGAAACCTAACAACAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAAGTG 540 Query 560 CCCTGTCTCCAAGTACTCTGCCTACCCTTTATGCTATTCATTCCGGCCAATCAGTGACTC 619 |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 541 CCCTGTCTCCAAGTACTCGGCCTACCCTTTATGCTATTCATTCCGGCCAATCTCTGACTC 600 Query 620 GTGTAAGTCCAAGAACAGTAGACCGGCGAGTCTCATTGACGCAACAAATGGCATTACCTT 679 ||| |||||||| ||||||||||| || |||||| |||| || || |||||||||||||| Sbjct 601 GTGCAAGTCCAAAAACAGTAGACCTGCAAGTCTCTTTGATGCTACGAATGGCATTACCTT 660 Query 680 TGGTGG-GTGTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGA-C-C----TCCTA 732 || ||| | |||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 661 TGATGGAG-GTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGATCTCCACCTCCTA 719 Query 733 CTCAAAAACGAAGTAAGATAAGCAGCAACAATAACAAC---TGAAAAGGAG-AGCAAGAT 788 |||| |||||||||||||| |||| |||||| |||||| |||||| ||| | |||||| Sbjct 720 CTCATAAACGAAGTAAGATGAGCAACAACAACAACAACAGCTGAAAAAGAGGA-CAAGAT 778 Query 789 TGGGTTTTGATTAGCAAGTCTTGTGTTAGAAGAATGTGTGCTT-AGTTAGGCCTTTTAGT 847 || ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 779 TGAGTTTTGATTAGTGAGTCTTGTGTTAGAAGAATGTGTGCTTCAGTTAGGTCTTTTAGT 838 Query 848 CTCCTCTCTAGACC-CTAGG-TTTAGGT-TT-GTGAACATGTAAATAGAGAGACGAAGTA 903 |||||||||| || ||||| ||||||| || ||||||||||||||||| |||||||||| Sbjct 839 ATCCTCTCTAG-CCTCTAGGGTTTAGGTGTTTGTGAACATGTAAATAGATAGACGAAGTA 897 Query 904 ACAAAACAGGAGATGAAGTCGTTTTCTTCTACCTGCATCAATCTCGAATCATCAGACTTC 963 ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| Sbjct 898 GCAAAACAGGAGATGAAGTCGTTTTCTTCTTCCTGCATCAGTCTCGAATCATCGGACTTC 957 Query 964 A 964 | Sbjct 958 A 958 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35873664897 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5