BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32340.1 Length=960 Score E Sequences producing significant alignments: (Bits) Value Ahg491493 jgi|Araly1|491493|fgenesh2_kg.7__926__AT4G32340.1 732 0.0 > Ahg491493 jgi|Araly1|491493|fgenesh2_kg.7__926__AT4G32340.1 Length=898 Score = 732 bits (396), Expect = 0.0 Identities = 467/501 (93%), Gaps = 6/501 (1%) Strand=Plus/Plus Query 1 GGAAACTCCATGATATTTTTGCAGTCTAAATATCTTTTCATCTCTCTTCTCTTCCTCCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 GGAAACTCCATGATATTTTTGCAGTCTAAATATCTTTTCATCTCTCTTCTCTCCCTCCAC 60 Query 61 TGAAATATT-CCCCACAAGAACTAACAAT--GATAATGAGAAGCGCGTCTTCACTGGACC 117 ||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 61 TGAAA-ATTTCCCCACAAGAACTAACAATATGATAATGAGAAGCGCGTCATCACTGGACC 119 Query 118 TTAACCTACGCGCCGCCCAGAAACCGTCTGTTCCAAGGGTGGTAACCACGGCTCGAACCG 177 |||||||||||||||||||||||||||| | |||| | |||||||| ||||||||||||| Sbjct 120 TTAACCTACGCGCCGCCCAGAAACCGTCGGCTCCACGTGTGGTAACGACGGCTCGAACCG 179 Query 178 TCTCTGCTGCTACTCCTCGTGTTGCTAAACCGATTACAAGAGCTTCTTCAGATGGAAACC 237 |||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||| | Sbjct 180 TCTCTGCTTCTCCTCCTCGTGTTGCTAAATCGATTACGAGAGCTTCTTCAGATGGAAATC 239 Query 238 TCTACAAGATTCAGTCGCCGGAGAGCATAACGAAAACCATCAGCGTATATCACGAAGAAA 297 | ||||||||||||||| ||||||||| ||||||||| |||||||| || |||||||||| Sbjct 240 TTTACAAGATTCAGTCGTCGGAGAGCAGAACGAAAACGATCAGCGTTTACCACGAAGAAA 299 Query 298 CGGCGTCTT-TGAGGGTTTTGGAAGGATCTCGACTCCCCCAAGGAGGTTCCAAcggtgga 356 | ||||| | | |||||||||||||||||| | ||| |||| |||||||||||||||||| Sbjct 300 CTGCGTCGTAT-AGGGTTTTGGAAGGATCTTGGCTCACCCATGGAGGTTCCAACGGTGGA 358 Query 357 tttggtggtagaggcggagatggtgccggaggtggcggtggaggtggaggtgggagCGTA 416 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 359 TTTGGTGGTAGAGGCGGAGATAGTGCCGGAGGTGGCGGTGGAGGTGGAGGTGGGAGCGTA 418 Query 417 GATGGTTATTACGAAGAGATGATCCAACGTTATCCCGGAGACACTCTCCTTCTCTCTAAC 476 ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 419 GATGGTTATTATGAAGAGATGATCCAACGTTATCCCGGTGACACTCTTCTTCTCTCTAAC 478 Query 477 TACGCTCGTTTCCTCAAAGAG 497 ||||||||||||||||||||| Sbjct 479 TACGCTCGTTTCCTCAAAGAG 499 Score = 566 bits (306), Expect = 1e-160 Identities = 380/414 (92%), Gaps = 12/414 (3%) Strand=Plus/Plus Query 534 GAGAGAGCGATGTTGTCTGAGAGTGGAAGAGATGGAGAGTTACTGTCTATGTATGGAGAT 593 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 497 GAGAGAGCAATGTTGTCTGAGAATGGAAGAGATGGAGAGTTACTGTCTATGTATGGAGAT 556 Query 594 TTGATATGGAAAAATCATGGAGACGGTGTTCGTGCTCAGTCTTACTATGATCAAGCTGTT 653 ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| Sbjct 557 TTGATATGGAAAAATCATGGAGATGGTGTTCGTGCTCACTCTTACTTTGATCAAGCTGTT 616 Query 654 CAATCTTCTCCTGATGACTGTAATGTTCTTGCGTCGTATGCTCGGTTTCTATGGGATGCT 713 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 617 CAATCTTCTCCTGATGACTGTCATGTTCTTGCGTCTTATGCTCGGTTTCTATGGGATGCT 676 Query 714 GAAGAAGAAGTGGAAGAGGAAGAGAGTAAACATCATGAGGATGGTTTCTCTGACTCTACC 773 |||||||||| |||||||||||| ||||||||| || | ||| ||||| ||||||| Sbjct 677 GAAGAAGAAGAGGAAGAGGAAGAAAGTAAACATG--GAA-ACGGTCTCTCTTTCTCTACC 733 Query 774 TATAACCCATCTGTATCAGTTGTGTCTTGACTCTTTGTGCTGATGTTAAACCGGTGTAAT 833 ||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||| Sbjct 734 TATAACCCATC---ATC--T-GTGTCTTGACTATTTGTGCTGATGTTAAACCGGTGTAAT 787 Query 834 ACAATGAAAACTCAAAGGTCCGGTTTAATCAGGAAAATATCTTCTGCACACATTGAAGTA 893 ||||| |||||||||| |||||||||| |||||||||||||||||||| | |||||| | Sbjct 788 ACAATAAAAACTCAAAAGTCCGGTTTAGTCAGGAAAATATCTTCTGCATA--TTGAAGCA 845 Query 894 GATTGATGCTAATGTGTATCAAAAGGTCCAAAGCCGCATTATTGTTGCAAAATG 947 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 846 GATCGATGCTAATGTGTATCAAAAG-TCCAAAGCCGCATTATTGTTGCAAAATG 898 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35644927395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5