BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32470.1 Length=890 Score E Sequences producing significant alignments: (Bits) Value Ahg944714 jgi|Araly1|944714|scaffold_700943.1 686 0.0 > Ahg944714 jgi|Araly1|944714|scaffold_700943.1 Length=414 Score = 686 bits (371), Expect = 0.0 Identities = 400/414 (97%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 75 CTGAAATTGAGAGAGACAGAGAAAAATGGCGTCGCTTCTGAAAGCATTCATCGATCCAAA 134 |||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||| Sbjct 1 CTGAAATTGAGAGAGACAAAGAAAAATGGCGTCTCTTCTGAAATCGTTCATCGATCCAAA 60 Query 135 GAAGAACTTCCTCGCTCGTATGCATATGAAAGCCATATCTACTCGCCTTCGCAGATACGG 194 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 GAAGAACTTCCTCGCTCGTATGCATATGAAAGCCATCTCTACTCGCCTTCGCAGATACGG 120 Query 195 TCTGAGGTACGATGATCTGTACGATCAGTATTACAGTATGGACATCAAAGAGGCTATGAA 254 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 TCTGAGGTACGATGATCTGTACGATCAGTATTATAGTATGGACATCAAAGAGGCTATGAA 180 Query 255 CAGATTGCCCAGGGAGGTCGTTGATGCTCGTAACCAGCGTCTCAAGCGTGCCATGGACCT 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAGATTGCCCAGGGAGGTCGTTGATGCTCGTAACCAGCGTCTCAAGCGTGCCATGGACCT 240 Query 315 CTCCATGAAGCACGAGTACCTCCCCAAGGATCTTCAGGCGGTGCAGACCCCATTCCGTGG 374 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTCCATGAAGCACGAGTATCTCCCCAAGGATCTTCAGGCGGTGCAGACCCCATTCCGTGG 300 Query 375 CTATCTTCAGGACATGCTTGCTCTTGTTGAGAGGGAAAGCAAGGAACGAGAGGCCTTGGG 434 |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 301 CTATCTTCAGGATATGCTGGCTCTTGTTGAGAGGGAAAGCAAAGAACGAGAGGCCTTGGG 360 Query 435 AGCTCTACCACTATACCAGCGCACACTCCCATAAGCATTCCT-TTCCCC-TTTT 486 ||||||||||||||||||||||||||||||||||| |||| | |||||| |||| Sbjct 361 AGCTCTACCACTATACCAGCGCACACTCCCATAAGAATTCATATTCCCCCTTTT 414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32976323205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5