BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32470.1

Length=890
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944714 jgi|Araly1|944714|scaffold_700943.1                        686    0.0  


> Ahg944714 jgi|Araly1|944714|scaffold_700943.1
Length=414

 Score =  686 bits (371),  Expect = 0.0
 Identities = 400/414 (97%), Gaps = 2/414 (0%)
 Strand=Plus/Plus

Query  75   CTGAAATTGAGAGAGACAGAGAAAAATGGCGTCGCTTCTGAAAGCATTCATCGATCCAAA  134
            |||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||||||
Sbjct  1    CTGAAATTGAGAGAGACAAAGAAAAATGGCGTCTCTTCTGAAATCGTTCATCGATCCAAA  60

Query  135  GAAGAACTTCCTCGCTCGTATGCATATGAAAGCCATATCTACTCGCCTTCGCAGATACGG  194
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  61   GAAGAACTTCCTCGCTCGTATGCATATGAAAGCCATCTCTACTCGCCTTCGCAGATACGG  120

Query  195  TCTGAGGTACGATGATCTGTACGATCAGTATTACAGTATGGACATCAAAGAGGCTATGAA  254
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  121  TCTGAGGTACGATGATCTGTACGATCAGTATTATAGTATGGACATCAAAGAGGCTATGAA  180

Query  255  CAGATTGCCCAGGGAGGTCGTTGATGCTCGTAACCAGCGTCTCAAGCGTGCCATGGACCT  314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CAGATTGCCCAGGGAGGTCGTTGATGCTCGTAACCAGCGTCTCAAGCGTGCCATGGACCT  240

Query  315  CTCCATGAAGCACGAGTACCTCCCCAAGGATCTTCAGGCGGTGCAGACCCCATTCCGTGG  374
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTCCATGAAGCACGAGTATCTCCCCAAGGATCTTCAGGCGGTGCAGACCCCATTCCGTGG  300

Query  375  CTATCTTCAGGACATGCTTGCTCTTGTTGAGAGGGAAAGCAAGGAACGAGAGGCCTTGGG  434
            |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  301  CTATCTTCAGGATATGCTGGCTCTTGTTGAGAGGGAAAGCAAAGAACGAGAGGCCTTGGG  360

Query  435  AGCTCTACCACTATACCAGCGCACACTCCCATAAGCATTCCT-TTCCCC-TTTT  486
            ||||||||||||||||||||||||||||||||||| |||| | |||||| ||||
Sbjct  361  AGCTCTACCACTATACCAGCGCACACTCCCATAAGAATTCATATTCCCCCTTTT  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32976323205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5