BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32480.1 Length=1145 Score E Sequences producing significant alignments: (Bits) Value Ahg944713 jgi|Araly1|944713|scaffold_700942.1 1448 0.0 > Ahg944713 jgi|Araly1|944713|scaffold_700942.1 Length=904 Score = 1448 bits (784), Expect = 0.0 Identities = 864/904 (96%), Gaps = 0/904 (0%) Strand=Plus/Plus Query 65 tctctcGCCTGCTTCAAGAAATGGATCGGCAAAGTTCCGATGACATCATGAAATTTCTCG 124 |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 TCTCTCTCCTCCTTCAAGAAATGGATCGGCAAAATTCCGATGACATCATGAAATTTCTCG 60 Query 125 ACGGCATGGCTAGCTCCGACGATGTTCTTTTTGGCTTCCTCGACGAAGGAAACCACTCAC 184 |||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||| Sbjct 61 ACGGCATGGCTAGCTCCGACGATGTTCTTTTTGGTTTTCTCGACGGAGGAAATCACTCAC 120 Query 185 CGGAGGATTATAACTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGATACCACCGATT 244 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 121 CGGAGGATTATAACTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGAGACCACCGATT 180 Query 245 GTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGGCGACAC 304 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 GTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACAAGAACAACTTCTCCAGGCGACAC 240 Query 305 TGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACTAAGGAAGCGTTGAAAG 364 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 241 TATATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACCAAGGAAGCGTTGAAAG 300 Query 365 TAGTTAGATCAAAGGGTTTGGTATGTGTCTGCCGGAGACCGGTTACCGACGGTTGTCGTA 424 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 TAGTTAGATCAAAGGGTTTGGTATGTGTTTGCCGGAGACCGGTTACCGACGGTTGTCGTA 360 Query 425 GCTGTTTACGCGGCGAAGTATCTAGCCTCCTCCGAGAAGCTGGCTATGATTGCGTCATTT 484 ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||| Sbjct 361 GCTGTTTACGCGGCGAAGTGTCTCGCCGCCTCCGAGAAGCTGGCTATGATTGCGCCATTT 420 Query 485 CCAAATCTAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATACTTGGAGG 544 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 421 CCAAATCCAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATATTTGGAGG 480 Query 545 TCGTGGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTA 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCGTGGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTA 540 Query 605 GGGCGGAGTTTGAGATGGCGAGAGGCAGTGAAGAGTACAAGCGACTCATCGGAATGTTAC 664 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 541 GGGCGGAGTTTGAGATGGCGAGAGGTAGTGACGAGTACAAGCGACTCATCGGAATGTTAC 600 Query 665 CGGAAGTGTATGTCGGGAAAACGGAGAGGCTAAAATCATTAATAAAGATATTGTGCACCG 724 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 601 CGGAAGTGTACGTCGGGAAAACGGAGAGGCTAAAATCATTGATAAAAATATTGTGCACCG 660 Query 725 CAGCGAAGAAGTGTATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAAT 784 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 661 CGGCGAAGAAGTGTATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAGT 720 Query 785 ACATGCAGGCTAAATGGTTTGGAACTTGTGAGAGAAAATCTGTGTCGCCAGTATCCGAAA 844 |||||||||| |||||| ||||||| |||||||||||||| |||||||| || ||||||| Sbjct 721 ACATGCAGGCGAAATGGCTTGGAACGTGTGAGAGAAAATCGGTGTCGCCGGTGTCCGAAA 780 Query 845 CTGAGGAGAATATGTTTCCGGTGGCAAAGCAGAGGGTTTCTATGTTGAATTATGGTCTTT 904 |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 781 CTGAAGAGGATATGTTTCCGGTGGCAAAGCAGAGGGTTTCTATGTTGAATAATGGTCTTT 840 Query 905 TTGGTGCTGGAATAGGCCGTCCGACCGTTGTAGCGGTTGTGTGAAACATCTATATAGACG 964 ||||||||||||| |||||||| |||| ||||||||||||||| |||| |||||||||| Sbjct 841 TTGGTGCTGGAATGGGCCGTCCAACCGCCGTAGCGGTTGTGTGAGACATATATATAGACG 900 Query 965 TACG 968 |||| Sbjct 901 TACG 904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42697667040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5