BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32570.1 Length=1443 Score E Sequences producing significant alignments: (Bits) Value Ahg328475 jgi|Araly1|328475|fgenesh1_pm.C_scaffold_7000702 1537 0.0 > Ahg328475 jgi|Araly1|328475|fgenesh1_pm.C_scaffold_7000702 Length=1056 Score = 1537 bits (832), Expect = 0.0 Identities = 1005/1084 (93%), Gaps = 29/1084 (3%) Strand=Plus/Plus Query 160 ATGGTGAACCACAACAATGGCCAGCGACCCACTGATATTGATTCTCGTCTCCGACAGACA 219 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGAACCACAACATTGGCCAGCGACCCACTGATATTGATTCTCGTCTCCGACAGACA 60 Query 220 GAACAAGATAAGCTCTTGTTCCATGACTTTTTAGGCTCCAAGAATCCTACTTTAGCATCC 279 |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||| Sbjct 61 GAACAAGATAAGCTCTTGTTCCATGACTTTCTAGGCTCCAAGACTCCAACTTTAGCCTCC 120 Query 280 ACTTCCATGGCTGACCATAGGCTACCACCGGATAATAAGGCGGCTAAAGCGGCGATGACT 339 ||| ||||||||||||||||| ||||||||| | |||||||||||||||| Sbjct 121 ACTCCCATGGCTGACCATAGGATACCACCGG------A------TAAAGCGGCGATGACT 168 Query 340 CCTTCCACGGCTTCTGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGAT 399 || || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 169 CCCTCTACGGCTTCTGCTTCCACCGCCGGTGGACGCGGCGGTCTCTCCTCAACCTCCGAT 228 Query 400 CTCGTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTGGACCA 459 |||||||||||||||||||| || |||||||||||||||||||| ||| ||||||||||| Sbjct 229 CTCGTCGAAAGACACAGCGGTGGAGGGAATCATCTTGATGGGATGCAAGTGTTTGGACCA 288 Query 460 AGAAGTGATGTTTCTGGCTCAATCATGAGCAATCGGTTTTCAGGAAATAAGAGAAGTAAC 519 |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 289 AGAAGTGATGCTTCTGGCTCAATCATGAGCAATCGATTTTCAGGAAACAAGAGAAGTAAC 348 Query 520 TCTGATTCTCACTTCACGACTCAGGAGCACCCAGAGACTCTGCATTGGTCCAAGTTGCTT 579 || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 349 TCGGATTCACACTTCACGACTCAAGAGCACCCAGAGACTCTGCATTGGTCCAAGTTGCTT 408 Query 580 AGAAACGGACCTGGAAGCTTCTCCATGAATGTGAATCCTTTGGCAAACCAGCCTCCACGC 639 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 AGAAACGGGCCTGGAAGCTTCTCCATGAATGTGAATCCTTTGGCAAACCAGCCTCCACGC 468 Query 640 GGAGGAGGACAGATCAGTCATTTGCTTCATCAGCTGTCTACTAGCAGGTTCAAAGATGAG 699 ||||| || |||| ||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 469 GGAGGGGGGCAGACCAGTCATTTGCTTCATCAGCTGTCTACAAGCAGATTTAAAGATGAA 528 Query 700 AACGTAGGCCCATCAGTTATTGCTCAGACAGCTGCTGATGAAGGTTCACGAACAGGGATG 759 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 AACGTAGGCCTATCAGTTATTGCTCAGACAGCTGCTGATGAAGGTTCACGAACAGGGATG 588 Query 760 AAAGGTCCCGGTATCTTGAGTTCTTTTACAATGCCAAACTCAAGCAAGCTCGAAAGTTTT 819 ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| Sbjct 589 AAAGGTCCCGGTATCTTGAGTTCTTTTACAATGCCAAGCTCGAGCAAGCTAGAAAGTTTT 648 Query 820 GCCCCTTCAAATACCGGAAATCGGAAAGACTTGGCGTCGAGTACTAAGCAAATGACCATC 879 |||| ||||| |||| |||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 649 GCCCATTCAAGTACCAGAAATCAGAAAGACTTGGCGTCGAGTACAAAGCAAATGACCATC 708 Query 880 TTCTATGGCGGTCAAGCTCATGTCTTTGATGACGTTCACCCAAACAAGGCGGATGTGATA 939 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 709 TTCTATGGCGGTCAAGCTCATGTCTTTGATGATGTTCACCCAAACAAGGCGGATGTGATA 768 Query 940 ATGGCCTTGGCAGGATCAAGCGGAGGCTCATGGTCTACGGGTTTGTCTCATAAACCGAAG 999 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 769 ATGGCCTTGGCAGGATCAAGCGGGGGCTCATGGTCTACGGGTTTGTCTCATAAACCGAAG 828 Query 1000 TCGAAGAACAACACAAGTGACGGTCCATACAAGCTAGGCCAAATGTATGAAGGAGGCAGC 1059 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 829 TCGAAGAACAACACAAGTGACGGTCCATACAAACTAGGCCAAATGTATGAAGGAGGCAGC 888 Query 1060 TCTA-AGGAAACACCACAAATGCCCCCGGAATTTCGTGCAAGGCCGAGTCATCAACCTAC 1118 |||| || ||||||| | || ||||||| ||||||||||||||||| ||||||||||| Sbjct 889 TCTAGAG-AAACACCCCTTTTGGCCCCGGAGTTTCGTGCAAGGCCGAGCCATCAACCTAC 947 Query 1119 CTCCAGTGCCTGTCACCGGATCTTTACACAACCAGGTAGAGAGCATCAAGGAAGCATCAT 1178 |||||||||||||||||||||||||||||||||||| | || ||||| || | Sbjct 948 CTCCAGTGCCTGTCACCGGATCTTTACACAACCAGG-A-AG--CATCA--------TC-T 994 Query 1179 CTCAAGGGGACGAGATATCAGAGATCCGGTTCACAGATCAGATCCTGAAAAAGAAGCCAC 1238 | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 995 C--AAGGGGACGAGATATCAGAGATCCGGTTCACATATCAGATCCTGAAAAAGAAGCCTC 1052 Query 1239 ATGA 1242 |||| Sbjct 1053 ATGA 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53973877165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5