BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32610.1 Length=1640 Score E Sequences producing significant alignments: (Bits) Value Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699 1393 0.0 Ahg932734 jgi|Araly1|932734|scaffold_400722.1 606 1e-172 > Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699 Length=1650 Score = 1393 bits (754), Expect = 0.0 Identities = 881/940 (94%), Gaps = 17/940 (2%) Strand=Plus/Plus Query 460 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGCCGATTCAGAACACCAACTTG 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGCCGATTCAGAACACCAACTTG 60 Query 520 TTTGCTGCTTTGGATACTTCGAGGAAGAAGAAGAAGTCTGATAAGGCTGGTAAGAGCAAA 579 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 61 TTTGCTGCTTTGGATACTTTGAGGAAGAAGAAGAAGTCAGATAAGGCTGGTAAGAGCAAA 120 Query 580 GCTTCCTCTAAGAGAGAAGATTCACAGAAGGAGCCTGAGCCACAGGTTTTCTGGGCACCT 639 |||||||||||| || ||| |||||| |||||||||||||||||||| |||||||||||| Sbjct 121 GCTTCCTCTAAGGGACAAGTTTCACAAAAGGAGCCTGAGCCACAGGTCTTCTGGGCACCT 180 Query 640 ACGCCTCTCAAAGCAAAGGCTTGGGCTGATATCGATAGCGATGATGAAGATGATGATTAT 699 |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct 181 ACGCCTCTCAAAGCAAAGGCTTGGGCCGATATCGATAGCGATGATGAAGATGACGACTAT 240 Query 700 TACGCTACCACTGCTCCACCTCAGTCCCTGTGGAGCACTTCTGAAGCCTCCCATTCAGAT 759 ||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||| Sbjct 241 TACGCTACCTCTGCTCCACCTCAGTCCGTTTGGAGCACTTCTGAAGCCTCCCATTCCGAT 300 Query 760 GCTAAAGACGTTCCCGCTGAGGAAATTGAAAGCGAAGAAGACACTCTTGATGATGGAGAT 819 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 301 GCTAAAGACGTTCACGCTGAGGAAAGTGAAAGCGAAGAAGACACTCTTGATGAAGGAGAT 360 Query 820 GATGATGATGTGGAGGAAGATCACGAGCAGGGAACAGAGACACAAGTTCATCCAGAAGCA 879 ||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||| Sbjct 361 GATGACGATGTGGAGGAAGAGCAGGAGCAGGGAACAGAGACA---GTTCATCCAGAAGCA 417 Query 880 GAGCCTGAGGTGAAAAAGGCTCCTGAAGTTCGTGCTCCTCCTAAGGAGGCAGAGAGGCAA 939 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 418 GAGCCTGAGGTGAAAAAGGCTCCTGAAGTTCCTGCACCTCCTAAGGAGGCAGAGAGGCAA 477 Query 940 CTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAGGCTTTGCTAGCAGAT 999 || |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 478 CTGTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTCGAGGCTTTGTTAGCAGAT 537 Query 1000 TTTGGAGTTGCAACCAAAGATGAGAATGGTCA-ACAAGACTCTCAAGATAAGGGGGAGAA 1058 |||||||| ||| ||||||||||||||||||| | |||||||||||||||||| ||||| Sbjct 538 TTTGGAGTCGCACCCAAAGATGAGAATGGTCATA-AAGACTCTCAAGATAAGGAAGAGAA 596 Query 1059 GAAAGAAGTGAATGATgagggagagaagaaggagaacacaaccggagaatcaaaggcctc 1118 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 597 GAAAGAAGTGAATGATGAGGGAGAGAAGAGGGAGAACACAACCGGAGAATCAAAGGCCTC 656 Query 1119 aaagaagaagaaaaagaaggacaaacagaaggagctaaaagaatcccagagtgaagtgaa 1178 ||||||||||||||||||||| |||||||| |||||||||||| | ||||| | Sbjct 657 AAAGAAGAAGAAAAAGAAGGATAAACAGAAAGAGCTAAAAGAA-----G--TGAAG--A- 706 Query 1179 gaGCAACTCGGATGCTGCAAGTGAGTCCGCTGAGCAGGAGGAGTCTTCTTCTTCCATCGA 1238 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 707 G--CAACTCAGATGCTGCAAGTGAGTCCGCTGAGCAGGAGGAGTCTTCTTCTTCCATTGA 764 Query 1239 CGTCAAAGAACGGCTAAAGAAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAGGAGGT 1298 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 765 TGTCAAAGAACGTCTAAAGAAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAAGAGGT 824 Query 1299 TGATGGTGCTTCAACAGCTGCTGCAAAGGAAGCAGCTGCGAGGAAGGCAAAGTTGGCCGC 1358 |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 825 GGATGGTGCCTCAACAGCCGCCGCAAAGGAAGCAGCTGCGAGGAAGGCAAAGTTGGCCGC 884 Query 1359 AGCgaagaaaaaagaaaagaaaaaCTACAATCAGCAACCT 1398 ||||||||||||||||||||||||||||||||||||||| Sbjct 885 GGCGAAGAAAAAAGAAAAGAAAAACTACAATCAGCAACCT 924 > Ahg932734 jgi|Araly1|932734|scaffold_400722.1 Length=1068 Score = 606 bits (328), Expect = 1e-172 Identities = 782/990 (79%), Gaps = 76/990 (8%) Strand=Plus/Plus Query 457 AAGATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGC-CGATTCAGAACACCAA 515 ||||||| ||| |||||||||||||||||||| |||||||| | |||| |||| ||||| Sbjct 18 AAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGAT-CACGATCCAGAGTACCAA 76 Query 516 CTTGTTTGCTGCTTTGGATACTTCG-AGGAAGAAGAAGAAGTCTGATAAGGCTGGTAAGA 574 |||||||| ||||||||||| ||| | ||||||||||||||| | | || |||| Sbjct 77 TTTGTTTGCAGCTTTGGATAC-TCGTAAGAAGAAGAAGAAGTC-----A-G--GG-AAGA 126 Query 575 GCAAAGCTTCCTCTAAGAGA-GAAGATTCACAGAAGGAGCCTGAGCCACAGGT-TTTCTG 632 ||||| || |||||| | | ||| || |||||||||||||||| ||||| ||| || Sbjct 127 ACAAAGGGTCTTCTAAGTCACG-AGAGCCAGAGAAGGAGCCTGAGCCTCAGGTCTTT-TG 184 Query 633 GGCACCTACGCC-TCTCAAAGCAAAGGCTTGGGCTGATATCGATAG-CGATGATGAAGAT 690 ||||||||| || | | |||| ||| ||||||||||||| ||| | || ||||| ||| Sbjct 185 GGCACCTACTCCGT-TGAAAGTTAAGTCTTGGGCTGATATTGAT-GATGACGATGATGAT 242 Query 691 GATGATTATTACGCTACCACTGCTCCACCTCAGTCCCT-G-TGGAGCACTTCTGAAGCC- 747 ||||| ||||| || ||||||||||| ||||||| || | ||||||||||||| ||| Sbjct 243 GATGACTATTATGCAACCACTGCTCCTCCTCAGT--CTGGTTGGAGCACTTCTG-TGCCT 299 Query 748 TCCCATTCAGATGCTAAAGACGTTCCCGCT-GAGGAAATTGAAAGCGAAGAAGACACTCT 806 |||||||| ||| | |||||||||| | | ||||||| |||||| || || || | ||| Sbjct 300 TCCCATTCGGATTCGAAAGACGTTCATG-TCGAGGAAAGTGAAAGTGAGGACGATATTCT 358 Query 807 TGATGATGGAGATGATGATGATGTGGAGGAAGATCACGAGCAGGGAACAGAGACACAAGT 866 |||||| || ||||||||||||||||||||| || || |||| ||||||| ||| || Sbjct 359 TGATGA---AGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTACAGGT 415 Query 867 TCATCCAGAAG-CAGAGCCTGAGGTGAA-AAAGGCTCCTGAAGTTCGTGCTCCTCCTAAG 924 |||||||| || | |||||||||||||| ||| ||||||||||||| ||| |||||||| Sbjct 416 TCATCCAG-AGCCTGAGCCTGAGGTGAAGAAA-GCTCCTGAAGTTCCTGCACCTCCTAAA 473 Query 925 GAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAG 984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 GAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAG 533 Query 985 GCTTTGCTAGCAGATTTTGGAGTTGCAACCAAAGATGAG-AATGGTCAACAAGACTCTCA 1043 |||||| | || |||||||| ||||| |||| || || ||||| ||| | || | ||| Sbjct 534 GCTTTGTTGGCTGATTTTGGTGTTGCTCCCAAGGA-GAATAATGGCCAAGATGAATTTCA 592 Query 1044 AGAT---AAGGGGGAGAAGAAAGAAG-TG--AATG-ATgagggagagaagaaggagaa-- 1094 ||| || || |||||||||| || |||| | |||||||||||||||||||| Sbjct 593 AGAGGCCAAACATGAAAAGAAAGAAGATGTCAATGGA-GAGGGAGAGAAGAAGGAGAATG 651 Query 1095 ca-caaccggagaatcaaaggcctcaaagaagaagaaaaagaaggacaaacagaaggagc 1153 || || || || |||||||| ||||| |||||||| |||||||| || ||||||||| Sbjct 652 CAGCAGGTGGGGAGTCAAAGGCATCAAAAAAGAAGAAGAAGAAGGATAAGCAGAAGGAGG 711 Query 1154 taaaagaatccca-gagt-g-aagtgaagaGCAACT-CGGATGCTGCA-AGTGA-G-TCC 1206 |||||||||| || ||| | ||| || | ||| | | ||||||| | | ||| | | | Sbjct 712 TAAAAGAATCTCAAGAGCAGCAAGCAAACAACAA-TGCTGATGCTGTAGA-TGAAGCTGC 769 Query 1207 -G---CTGAGC-AG--GAGGA-GTCTTCTTCTTCCATCGACGTCAAAGAACGGCT-AAAG 1257 | |||| | | ||||| | || | | || || ||||||||| |||| ||| Sbjct 770 TGGGTCTGAACCAACTGAGGAAGAAA-CT-C--CAATTGATGTCAAAGAAAGGCTGAAA- 824 Query 1258 AAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAGGAGGTTGATGGTGCTTC-AACAGC 1316 ||| ||||||| |||||||||||||| ||| |||| ||||| |||| ||| | || ||| Sbjct 825 AAGCTTGCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAA-AGC 883 Query 1317 TGCTGCAAAGGAAGCAGCTGCGAGGAAGGCA-AAGTTGGCCGCAGCgaagaaaaaagaaa 1375 |||||| ||||||||||||| || | | | ||| ||||||| || ||||| || || | Sbjct 884 TGCTGCGGAGGAAGCAGCTGCAAG-ACGTAAGAAGCTGGCCGCTGCAAAGAAGAAGGAGA 942 Query 1376 agaaaaaCTACAATCAGCAACCTGTGAGGT 1405 |||| |||| || || || |||||| ||| Sbjct 943 AGAACCACTATAACCAACAGCCTGTGCGGT 972 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61477655430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5