BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32680.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353559 jgi|Araly1|353559|fgenesh1_pg.C_scaffold_7000732 977 0.0
Ahg888855 jgi|Araly1|888855|Al_scaffold_0007_841 924 0.0
> Ahg353559 jgi|Araly1|353559|fgenesh1_pg.C_scaffold_7000732
Length=912
Score = 977 bits (529), Expect = 0.0
Identities = 605/641 (94%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 286 GCTTTCACAAGTCACCAGGACAACATCTCTGATGCTGCA-ATGCTTGAGAATGTGGATCA 344
|||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||||
Sbjct 277 GCTTTCACAAGTCACCAGGAAAACATCTCTGATGCTG-AGATGCTTGATAATGTGGATCA 335
Query 345 TATCATCCATCAAAGCAGGGAAGAACCTCTTCAGCCTCAGAGGCATGCTGAAACATTGGC 404
||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 336 TATAATCCATCAAAGCAGGGCAGAATCGCTTCAGCCTCAGAGGCATGCTGAAACATTGGC 395
Query 405 AGAAGCCTCTGCTTCAGATCCTAGAGACACAACAACAATACAACCGCCTCCTACAACATC 464
||||||||||| | |||||||||||| || |||||||||||||| |||||||||||||
Sbjct 396 AGAAGCCTCTGGTGCAGATCCTAGAG--AC-GCAACAATACAACCGTCTCCTACAACATC 452
Query 465 AAGTGTTCAAAACCCATCAGTGGTAGATTTAGGTGCTTCTCAAGCATTTATTCCTGTGGT 524
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 453 AAGTGTTCAAAACCCATCAGTGGTAAATTTAGGTGCTTCTCAAGCATTTATTCCTGTGGT 512
Query 525 TAGTTTTGTGAACGCCATCACACCAAAGCACATTGGAGCGGCCATTGATGCTTCGGAATA 584
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 513 TAGTTTTGTGAACGCCATCACGCCAAAACACATTGGAGCGGCCATTGATGCTTCAGAATA 572
Query 585 CGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTCATACTATCTCATCTCGGTTT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTCATACTATCTCATCTCGGTTT 632
Query 645 CTCTTCCCTAGGCAACATTGTAAGCTTCAGGCCAGTTTTCTTGCTTGTCTTGACTGATGC 704
|||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||
Sbjct 633 CTCTTCCCTAGGCAACATAGTAAGCTTCAGGCCAGTTTTCTTGCTTCTGTTGACCGATGC 692
Query 705 CACAATTGTGCTTGGACGTGTTCTGCTGAGTCATCGTGGAGACTCTTCCTCGGCCTCAGG 764
||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||
Sbjct 693 CACAATTGTGCTTGGACGTGTTCTGCTGAGTCATCATGGAGATTCTTCCTCAGCTTCAGG 752
Query 765 GACGGTGATGAGCGGGCAGGGTATTG-TGGACCAAGTAGGCAACGCTTTGGAGACGGTGA 823
||| || ||||||||||| ||||| | ||||||||||||||||||||||||||| |||||
Sbjct 753 GACAGTAATGAGCGGGCAAGGTAT-GATGGACCAAGTAGGCAACGCTTTGGAGATGGTGA 811
Query 824 TGATGGTGAAGAAGATAATGGATGCACTTCTTATGGATTTTAGCTTATACGCTGTGATTC 883
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TGATGATGAAGAAGATAATGGATGCACTTCTTATGGATTTTAGCTTATACGCTGTGATTC 871
Query 884 TCATATGTGGCCTCTTGGTCACCCAAAGCATCTTTCCTTAG 924
||||||||||||| ||||||||||||| |||||||||||||
Sbjct 872 TCATATGTGGCCTATTGGTCACCCAAAACATCTTTCCTTAG 912
Score = 244 bits (132), Expect = 8e-64
Identities = 185/209 (89%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 76 ATGGCGTCGAACAGCAGAGAAGCCAGGAGGCGGAAGATCCTAGATAGAGGATCTGATCGT 135
||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1 ATGTCGTCGAACAGCAGAGAAGCCAGGAGGCGGAAGATTCTAGAAAGAGGATCTGATCGT 60
Query 136 TTAGCCTTTATCACTGGTCAGATCAACGGCGTTCCTTCTCCACCTCCTTCCGATTCTACT 195
||||||||||||||||||||||||||||||| || | |||| ||||||||||||||| ||
Sbjct 61 TTAGCCTTTATCACTGGTCAGATCAACGGCGCTCATCCTCCTCCTCCTTCCGATTCTCCT 120
Query 196 TCTTCCCTTTCCCAGTCTGACCTTCAAACTGACCAATCCTTACCGGATACGATTCCCCCT 255
||||||||||||| |||| | || ||| | | | || |||||| ||||||||||||
Sbjct 121 TCTTCCCTTTCCCCGTCTCATCTCCAA--T--C-A-TC---ACCGGACACGATTCCCCCT 171
Query 256 CGCGATCAGATTCTTAAAGCTCAAGAAAT 284
|| || |||||||||||||||||||||||
Sbjct 172 CGTGAACAGATTCTTAAAGCTCAAGAAAT 200
> Ahg888855 jgi|Araly1|888855|Al_scaffold_0007_841
Length=1902
Score = 924 bits (500), Expect = 0.0
Identities = 598/644 (93%), Gaps = 12/644 (2%)
Strand=Plus/Plus
Query 287 CTTTCACAAGTCACCAGGACAACATCTCTGATGCTGCAATGCTTGAGAAT---G-T-GGA 341
||||||||||||||||||| |||||||||||||||| |||||||| ||| | | | |
Sbjct 1265 CTTTCACAAGTCACCAGGAAAACATCTCTGATGCTGTGATGCTTGAAAATGCGGATAGTA 1324
Query 342 TCA-TATCATCCATCAAAGCAGGGAAGAACCTCTTCAGCCTCAGAGGCATGCTGAAACAT 400
| | |||||||||||||||||| |||||| | ||||||||||||||| || |||||||||
Sbjct 1325 TGAGTATCATCCATCAAAGCAGAGAAGAATCACTTCAGCCTCAGAGGTATTCTGAAACAT 1384
Query 401 TGGCAGAAGCCTCTGCTTCAGATCCTAGAGACACAACAACAATACAACCGCCTCCTACAA 460
|||||||||||| ||||||||||||||||| || ||||||||||||||| ||||| |
Sbjct 1385 TGGCAGAAGCCTGTGCTTCAGATCCTAGAG--AC-ACAACAATACAACCGTCTCCT---A 1438
Query 461 CATCAAGTGTTCAAAACCCATCAGTGGTAGATTTAGGTGCTTCTCAAGCATTTATTCCTG 520
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1439 CATCAAGTGCTCAAAACCCATCAGTGGTAGATTTACGTGCTTCTCAAGCATTTATTCCTG 1498
Query 521 TGGTTAGTTTTGTGAACGCCATCACACCAAAGCACATTGGAGCGGCCATTGATGCTTCGG 580
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1499 TGGTTAGTTTTGTGAACGCCATCACACCAAAGCACATTGGAGCGGCCATCGATGCTTCAG 1558
Query 581 AATACGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTCATACTATCTCATCTCG 640
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1559 AACACGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTGATACTATCTCATCTTG 1618
Query 641 GTTTCTCTTCCCTAGGCAACATTGTAAGCTTCAGGCCAGTTTTCTTGCTTGTCTTGACTG 700
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 1619 GTTTCTCTTCCCTAGGCAACATAGTAAGCTTCAGGCCAGTTTTCTTGCTTCTCTTGACCG 1678
Query 701 ATGCCACAATTGTGCTTGGACGTGTTCTGCTGAGTCATCGTGGAGACTCTTCCTCGGCCT 760
||||||||||||| ||||||||| ||||||||||||| |||||||| |||||| | ||||
Sbjct 1679 ATGCCACAATTGTACTTGGACGTTTTCTGCTGAGTCACCGTGGAGATTCTTCCACAGCCT 1738
Query 761 CAGGGACGGTGATGAGCGGGCAGGGTATTGTGGACCAAGTAGGCAACGCTTTGGAGACGG 820
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1739 CAGGGACAGTAATGAGCGGGCAGGGTATAGTGGACCAAGTAGGCAACGCTTTGGAGACGG 1798
Query 821 TGATGATGGTGAAGAAGATAATGGATGCACTTCTTATGGATTTTAGCTTATACGCTGTGA 880
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1799 TGATGATGATGAAGAAGATAATGGATGCACTGCTTATGGATTTTAGCTTATACGCTGTGA 1858
Query 881 TTCTCATATGTGGCCTCTTGGTCACCCAAAGCATCTTTCCTTAG 924
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TTCTCATATGTGGCCTCTTGGTCACCCAAAGCATCTTTCCTTAG 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5