BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32770.1
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491430 jgi|Araly1|491430|fgenesh2_kg.7__863__AT4G32770.1 2381 0.0
> Ahg491430 jgi|Araly1|491430|fgenesh2_kg.7__863__AT4G32770.1
Length=1585
Score = 2381 bits (1289), Expect = 0.0
Identities = 1526/1632 (94%), Gaps = 49/1632 (3%)
Strand=Plus/Plus
Query 59 TCTTCCATTATGGAGATACGGAGCTTGATTGTTTCTATGAACCCTAATTTATCTTCCTTT 118
||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 TCTTCTATTATGGAGATACGGAGCTTGATTGTTTCTTTGAACCCTAATTTCTCTTCCTTT 60
Query 119 GAGCTCTCTCGCCCTGTATCTCCTCTCACTCGCTCACTAGTTCCGTTCCGATCGACTAAA 178
|||||||||||||||| ||||||||| | | | |||||||| |||||
Sbjct 61 GAGCTCTCTCGCCCTG---------TCACTCGCT--C-A----C--TCCGATCGGCTAAA 102
Query 179 CTAGTTCCCCGCTCCATTTCTAGGGTTTCGGCGTCGATCTCCACCCCG-AATAGTGAAAC 237
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||
Sbjct 103 CTAGTTCCCCGCTCCATTTCTAGGGTTTCGGCGTCGATCTCCACTCCGTCCT-CTGACAC 161
Query 238 TGACAAGATCTCCGTTAAACCTGTTTACGTCCCGACGTCTCCCAATCGCGAACTCCGGAC 297
||||||||||||||| ||||||||||||||||||||| | |||||||| || ||||||||
Sbjct 162 TGACAAGATCTCCGTGAAACCTGTTTACGTCCCGACGCCCCCCAATCGTGAGCTCCGGAC 221
Query 298 TCCTCACAGTGGATACCATTTCGATGGAACACCTCGGAAGTTCTTCGAGGGATGGTATTT 357
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 222 TCCTCACAGTGGATACCATTTCGATGGAACAGCTAGGAAGTTCTTCGAGGGATGGTATTT 281
Query 358 CAGGGTTTCCATCCCAGAGAAGAGGGAGAGTTTTTGTTTTATGTATTCTGTGGAGAATCC 417
||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 282 CAGGGTTTCAATTCCAGACAAGAGGGAGAGTTTTTGCTTTATGTATTCTGTGGAGAATCC 341
Query 418 TGCATTTCGGCAGAGTTTGTCACCATTGGAAGTGGCTCTATATGGACCTAGATTCACTGG 477
||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 342 TGCATTTCGCCAGAGATTGTCACCATTGGATGTGGCTCTTTATGGACCTAGATTCACTGG 401
Query 478 TGTTGGAGCTCAGATTCTTGGCGCTAATGATAAATATTTATGCCAATACGA-ACAAGACT 536
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 402 TGTCGGAGCTCAGATTCTTGGCGCTAATGATAAATATTTATGCCAATAC-ACGCAAGAGT 460
Query 537 CTCACAATTTCTGGGGAGATCGACATGAGCTAGTTTTGGGGAATACTTTTAGTGCTGTGC 596
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CTCACAACTTCTGGGGAGATCGACATGAGCTAGTTTTGGGGAATACTTTTAGTGCTGTGC 520
Query 597 CAGGCGCAAAGGCTCCAAACAAGGAGGTTCCACCAGAGGAATTTAACAGAAGAGTGTCCG 656
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 521 CAGGCGCAAAGTCTCCAAACAAGGAGGTTCCACCAGAGGAATTTAACAGAAGGGTGTCCG 580
Query 657 AAGGGTTCCAAGCTACTCCATTTTGGCATCAAGGTCACATTTGCGATGATGGCCGTACTG 716
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 581 AAGGGTTCCAAGCTACCCCATTTTGGCATCAAGGTCACATTTTCGATGATGGCCGGACTG 640
Query 717 ACTATGCGGAAACTGTGAAATCTGCTCGTTGGGAGTATAGTACTCGTCCCGTTTACGGTT 776
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 641 ACTATGCGGAAACGGTGAAATCTGCTCGTTGGGAGTATAGTACTCGTCCTGTTTACGGTT 700
Query 777 GGGGTGATGTTGGGGCCAAACAGAAGTCAACTGCAGGCTGGCCTGCAGCTTTTCCTGTAT 836
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 701 GGGGTGATGTTGGGGCCAAACAGAAGTCTACTGCAGGCTGGCCTGCAGCTTTTCCTGTAT 760
Query 837 TTGAGCCTCATTGGCAGATATGCATGGCAGGAGGCCTTTCCACAGGGTGGATAGAATGGG 896
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 761 TTGAGCCTCATTGGCAGATATGCATGGCAGGAGGCCTGTCCACAGGGTGGATAGAATGGG 820
Query 897 GCGGTGAAAGGTTTGAGTTTCGGGATGCACCTTCTTATTCAGAGAAGAATTGGGGTGGAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GCGGTGAAAGGTTTGAGTTTCGGGATGCACCTTCTTATTCAGAGAAGAATTGGGGTGGAG 880
Query 957 GCTTCCCAAGAAAATGGTTTTGGGTCCAGTGTAATGTCTTTGAAGGGGCAACTGGAGAAG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 881 GCTTCCCAAGAAAATGGTTTTGGGTCCAGTGTAATGTCTTTGAAGGGGCAAGTGGAGAAG 940
Query 1017 TTGCTTTAACCGCAGGTGGCGGGTTGAGGCAATTGCCTGGATTGACTGAGACCTATGAAA 1076
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 941 TTGCTTTAACCGCAGGTGGCGGGTTGAGGCAGTTGCCTGGATTGACTGAGACCTATGAAA 1000
Query 1077 ATGCTGCACTGGTTTGTGTACACTATGATGGAAAAATGTACGAGTTTGTTCCTTGGAATG 1136
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1001 ATGCTGCACTGGTTTGTGTACACTATGATGGAAAATTGTACGAGTTTGTTCCGTGGAATG 1060
Query 1137 GTGTTGTTAGATGGGAAATGTCTCCCTGGGGTTATTGGTATATAACTGCAGAGAACGAAA 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1061 GTGTTGTTAGATGGGAAATGTCTCCCTGGGGTTATTGGTATATAACTGCAGAAAATGAGA 1120
Query 1197 ACCATGTGGTGGAACTAGAGGCAAGAACAAATGAAGCGGGTACACCTCTGCGTGCTCCTA 1256
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CCCATATGGTGGAACTAGAGGCAAGAACAAATGAAGCGGGTACACCTCTGCGTGCTCCTA 1180
Query 1257 CCACAGAAGTTGGGCTAGCTACGGCTTGCAGAGATAGTTGTTACGGTGAATTGAAGTTGC 1316
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1181 CCACAGAAGTTGGGCTAGCAACGGCTTGCAGAGATAGTTGTTACGGTGAGTTGAAGTTGC 1240
Query 1317 AGATATGGGAACGGCTATATGATGGAAGTAAAGGCAAGGTGATATTAGAGACAAAGAGCT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 AGATATGGGAACGGCTATATGATGGAAGTAAAGGCAAGGTGATATTAGAGACAAAGAGCT 1300
Query 1377 CAATGGCAGCAGTGGAGATAGGAGGAGGACCGTGGTTTGGGACATGGAAAGGAGATACGA 1436
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1301 CAATGGCAGCGGTGGAGATAGGAGGAGGACCGTGGTTTGGGACATGGAAAGGAGATACAA 1360
Query 1437 GCAACACGCCCGAGCTACTAAAACAGGCTCTTCAGGTCCCATTGGATCTTGAAAGCGCCT 1496
||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1361 GCAACACCCCCAAGCTACTCAAACAGGCTCTTCAGGTCCCATTGGATCTTGGAAGCGCCT 1420
Query 1497 TAGGTTTGGTCCCTTTCTTCAAGCCACCGGGTCTGTAACATTGATGAGTGTTTTGTTTGT 1556
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1421 TAGGTTTGGTCCCTTTCTTCAAGCCACCGGGTTTGTAACATTGATGAGTGTTTTGTTTGT 1480
Query 1557 TGATAGAGACCCATGTGATGAATGAAGCCTTAGTCATGTCATTGCTAGCTTCACTATTAT 1616
||||||||| | || | | || | ||| | ||||||||||||| ||
Sbjct 1481 TGATAGAGA---A-GT--T-A-TG-----T----CAT-T----GCTAGCTTCACTA--AT 1516
Query 1617 GTATGTATGATTTTAGTTCGTTCGGTCCTTGTGGTAAATGATACGGGCCAGTGTAAAGTC 1676
| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1517 CT--GTATGATTT-AGTTCGTTCGGTCCTTGTGGTAAATTATACGGGCCAGTGTAAAGTC 1573
Query 1677 TAGTTCAATAAA 1688
||||||||||||
Sbjct 1574 TAGTTCAATAAA 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5