BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32800.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944670 jgi|Araly1|944670|scaffold_700899.1 907 0.0
Ahg902168 jgi|Araly1|902168|Al_scaffold_0004_2818 340 1e-92
Ahg893832 jgi|Araly1|893832|Al_scaffold_0006_1828 340 1e-92
> Ahg944670 jgi|Araly1|944670|scaffold_700899.1
Length=730
Score = 907 bits (491), Expect = 0.0
Identities = 653/725 (90%), Gaps = 36/725 (5%)
Strand=Plus/Plus
Query 267 GCTCTAAA-CTTTCTGACTACCAATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAA 325
||| |||| |||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GCT-TAAACCTTTCTGATTAACAATGGCAAATTCGTCTTCCGACAAGGAGAAGAAGGAAA 59
Query 326 ATAATAAGCAGCCCGTGTATCGTGGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGG 385
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATAGTAAGCAGCCCGTGTATCGTGGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGG 119
Query 386 AGATTCGCGAACCGA-GGAAGAAATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAG 444
||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGATTCGTGAACC-ACGGAAGAAATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAG 178
Query 445 ATGGCTATGCGTGCTCACGACGTGGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTC 504
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 ATGGCGATGCGTGCTCACGACGTGGCGGCTATGAGTATCAAAGGAAGTTCAGCCATTCTC 238
Query 505 AATTTCCCTGAGCTCTCTAAACTTCTT-CCCCGACCCGTTTCGCTCAGCCCTCGTGACGT 563
||||||||||||||||| | || || |||||||||||||||||||||||||| |||||
Sbjct 239 AATTTCCCTGAGCTCTCCGATTTT-TTGCCCCGACCCGTTTCGCTCAGCCCTCGCGACGT 297
Query 564 CAGAGCTGCGGCGACCAAAGCTGCTCTCATGGACTTCGATACGACGGCGTTTCGTTCGGA 623
||||||||||||||||||||| ||||||||||||||||||||| || ||| |||||| ||
Sbjct 298 CAGAGCTGCGGCGACCAAAGCCGCTCTCATGGACTTCGATACGCCGCCGTGTCGTTCAGA 357
Query 624 TACTGAGACTAGCGAAACGA-CGAC-G-TC-GA-A-TA---AAATGTC-A-GA-G-AGTA 670
|||||||| |||||||||| | | | || || | || ||| | | | | | | ||
Sbjct 358 GACTGAGACGAGCGAAACGAACAAAAGGTCAGAGACTAGCGAAACGACGACGTCGGA-TA 416
Query 671 ---G-T--GAGAGTAACGAAACGGTGTCGTTCTCATCGTCGTCTTGGTCCTCTGTTACGA 724
| | ||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 417 AAAGGTCAGAGAGTAGCGAAACGGTGTCGTTCTCATCGTCGTCTTCGTTCTCTGTTACGA 476
Query 725 GCATTGAGGAAAGTACAGTCTCCGACGATC-T-T-GACGAGATCGTAAAGTTACCGAGTC 781
||||||||||||||||||||||||||||| | | |||| |||||| |||||||||||||
Sbjct 477 GCATTGAGGAAAGTACAGTCTCCGACGATGATCTAGACGCGATCGTTAAGTTACCGAGTC 536
Query 782 TAGGAACGAGCCTAAACGAGTCGAACGAGTTCGTGATATTTGACTCGTTGGAGGATTTGG 841
|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 537 TAGGAACGAGTGTAGACGAGTCGAACGAGTTCGTGATTTTTGACTCGTTGGAGGATTTGG 596
Query 842 TGTACATGCCTCGGTGGTTAAGCGGTACGGAAGAAGAAG---TTTTTACGTATAATAACA 898
|||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 597 TGTACATGCCTCCGTGGTTAAGCGGTACGGAAGAAGAAGAAGTTTTTACGTATAA---CA 653
Query 899 ATGATTCTTCGTTGAATTACTCATCAGTTTTCGAATCTTGGAAACATTTTCCCTGAGAAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATGATTCTTCGTTGAATTACTCATCAGTTTTCGAATCTTGGAAACATTTTCCCTGAGAAA 713
Query 959 A-GAA 962
| |||
Sbjct 714 AAGAA 718
> Ahg902168 jgi|Araly1|902168|Al_scaffold_0004_2818
Length=345
Score = 340 bits (184), Expect = 1e-92
Identities = 207/218 (95%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 289 ATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAAATAATAAGCAGCCCGTGTATCGT 348
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAAATAGTAAGCAGCCCGTGTATCGT 60
Query 349 GGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGGAGATTCGCGAACCGA-GGAAGAA 407
||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct 61 GGAGTCCGTATGAGGAGCTGGGGCAAATGGGTATCGGAGATTCGTGAACC-ACGGAAGAA 119
Query 408 ATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAGATGGCTATGCGTGCTCACGACGT 467
||||||||||||| |||||| | ||||||||| ||||||||| |||||| ||||||||||
Sbjct 120 ATCGAGAATCTGGATCGGGAATCTTCCGACGGTGGAGATGGCGATGCGTTCTCACGACGT 179
Query 468 GGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTCA 505
||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTCA 217
> Ahg893832 jgi|Araly1|893832|Al_scaffold_0006_1828
Length=285
Score = 340 bits (184), Expect = 1e-92
Identities = 207/218 (95%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 289 ATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAAATAATAAGCAGCCCGTGTATCGT 348
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAAATAGTAAGCAGCCCGTGTATCGT 60
Query 349 GGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGGAGATTCGCGAACCGA-GGAAGAA 407
||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct 61 GGAGTCCGTATGAGGAGCTGGGGCAAATGGGTATCGGAGATTCGTGAACC-ACGGAAGAA 119
Query 408 ATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAGATGGCTATGCGTGCTCACGACGT 467
||||||||||||| |||||| | ||||||||| ||||||||| |||||| ||||||||||
Sbjct 120 ATCGAGAATCTGGATCGGGAATCTTCCGACGGTGGAGATGGCGATGCGTTCTCACGACGT 179
Query 468 GGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTCA 505
||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTCA 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5