BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32915.1 Length=745 Score E Sequences producing significant alignments: (Bits) Value Ahg491403 jgi|Araly1|491403|fgenesh2_kg.7__836__AT4G32915.1 1003 0.0 Ahg944656 jgi|Araly1|944656|scaffold_700885.1 313 1e-84 > Ahg491403 jgi|Araly1|491403|fgenesh2_kg.7__836__AT4G32915.1 Length=695 Score = 1003 bits (543), Expect = 0.0 Identities = 610/641 (95%), Gaps = 10/641 (2%) Strand=Plus/Plus Query 26 AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATATGCGTCTCCGAATCGCTGCTACAT 85 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| Sbjct 1 AGCCATGGCGACCAGAGCTTTGCTTGCCGTTATATCTGCGTCTCCGAATCGCTGCTTCAT 60 Query 86 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTGTTCTTCTTCAAGTCATTATTACC- 144 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTCCTCTTCTTCAAGTCATTATTACCA 120 Query 145 AA-A-GACAGAGTAGAAAAAACCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTC 202 || | ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 121 AAGACGACAGAGTAGAAAAATCCACAGAATAGCTCCAAGTTACTCGTCTGACTCGGATTC 180 Query 203 CTCCGTTCTTCAGCCGCCGGATGTGGCCCGTCTTGCTCAGACAGCTCGAATCTCTCTAAC 262 ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| Sbjct 181 CTCCGTTCTTCAGCCGCCGGACGTGTCCCGTCTAGCTCAGACAGCTCGAATCTCTCTAAC 240 Query 263 TCCGG-CGGAGATAGAGGAATGTGAAACTAAAATTCGTCGAGTCATCGACTGGTTTGGGC 321 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCGGAC-GAGATAGAGGAATGTGAAACTAAAATTCGTCGAGTCATCGACTGGTTTGGGC 299 Query 322 AGCTTCAACAAGTTGATGTTAACAGTGTGGAGCCAGCTATTAGAGCAGAAATGGATGGTG 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 300 AGCTTCAACAAGTTGATGTTAACAGTGTGGAGCCAGCTATTAGAGCAGAAATGGATGGCG 359 Query 382 GAAATTTGCGAGAGGATGCTCCAGAAACATTTGACAACAGGGACAGTATAAGAGCTTCCA 441 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 360 GAGATTTGCGAGAGGATGCTCCAGAAACATTTGAGAACAGGGACAGTATAAGAGCTTCCA 419 Query 442 TTCCAAGCTTTGAGGACGCATATCTAAAAGTCCCTAAAATACTAAACAAAGAGTGACTTT 501 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 420 TTCCAAGCTTTGAGGACGCATATTTAAAAGTCCCTAAAATACTTAACAAAGAGTGACTTT 479 Query 502 TTCAGCTTCTTGGAATTGTTTGGCTGAAGAGATTCATTCTCAGATCCGGTTCTTGTTCCA 561 |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 480 TTCAGCTTCTTGGATTTGTTTGCCTGGAGAGATTCATTCTCAGATCCGGTTCTTGTTCCA 539 Query 562 GCATCTCTATGTTTTCTAAAATTGGTTAGCAGAAAACAAAATTGCCTCAAAA-TTGTTAA 620 |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| || Sbjct 540 GCATCT--ATGTTTTCTAAAATTGGTTAGGAGAAAACAAAATTGCCTCAAAAATTGTGAA 597 Query 621 GTCTCACGTAGGCTATTA-T-TCTACAACATTTTGTTCACA 659 |||||||||||||||| | | |||||||||||||||||||| Sbjct 598 GTCTCACGTAGGCTATCACTCTCTACAACATTTTGTTCACA 638 Score = 56.5 bits (30), Expect = 3e-07 Identities = 32/33 (97%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 712 AGTGTCTGTGATGGGCCGTTTTGATCCCAGCCT 744 |||||||||||||||||||||||||||| |||| Sbjct 663 AGTGTCTGTGATGGGCCGTTTTGATCCCGGCCT 695 > Ahg944656 jgi|Araly1|944656|scaffold_700885.1 Length=296 Score = 313 bits (169), Expect = 1e-84 Identities = 192/202 (95%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 26 AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATATGCGTCTCCGAATCGCTGCTACAT 85 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 20 AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATCTGCGTCTCCGAATCGCTGCTTCAT 79 Query 86 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTGTTCTTCTTCAAGTCATTATTACCA 145 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 80 CTCTCCGAGCAGGATCAAAATCCAATCTTTAA------CTTCTTCAAGTCATTATTACCA 133 Query 146 AAGACAGAGTAGAAAAAACCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTCCTC 205 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 134 AAGACAGAGTAGAAAAATCCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTCCTC 193 Query 206 CGTTCTTCAGCCGCCGGATGTG 227 |||||||||||||||||| ||| Sbjct 194 CGTTCTTCAGCCGCCGGACGTG 215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27448500240 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5