BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32930.2

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg353533 jgi|Araly1|353533|fgenesh1_pg.C_scaffold_7000706           701    0.0  


> Ahg353533 jgi|Araly1|353533|fgenesh1_pg.C_scaffold_7000706
Length=504

 Score =  701 bits (379),  Expect = 0.0
 Identities = 482/527 (91%), Gaps = 26/527 (5%)
 Strand=Plus/Plus

Query  44   ATGGTGAACTATGTGCTCAAAATCACCGCTGATCTCGAGAATCTCACTAATCTCCAGCCT  103
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGTGAACTATGTGCTCAAAATCACCGCTGATCTCGAGAATCTGACTAATCTCCAGCCT  60

Query  104  TCCGGTGGCTGCGACGATTCCAACTTCCCTTACCTCTTCAAGTTGAAATGTGAAAGATGT  163
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  61   TCCGGTGGCTGCGACGATTCAAACTTCCCTTACCTCTTCAAGTTGAAATGTGAAAGATGC  120

Query  164  GGAGAGGTGACTCCGAAAGAAACATGTGTGACTTTGAATGAGACTTTTACTCCTCCGGGA  223
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  GGAGAGGTGACTCCGAAAGAAACATGTGTTACTTTGAATGAGACTTTTACTCCTCCGGGA  180

Query  224  GGTAGGGGTACTTGTCATCTTGTTCAGAAGAAAGCAAATATTGGCT-CTGATTTGTGTAA  282
            |||| |||     || | |||| |          |  || || | | | ||   ||||||
Sbjct  181  GGTA-GGG-----GT-A-CTTG-T----------C--ATCTT-G-TACAGA--AGTGTAA  215

Query  283  GTTCTGTGGAAGGGAAGGGAATGTGACTATGATTCCGGGCAAAGGTCGACCTTTAACTCT  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  GTTCTGTGGAAGGGAAGGGAATGTGACTATGATTCCGGGCAAAGGTCGACCTTTAACTCT  275

Query  343  GGAAGATTCTGAGGCTGGAGAACATGCCCCTCTTATGGTGTTTGACTGTCGTGGCTATGA  402
            ||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct  276  GGAAGATTCTGAGGCTGGAGAACATGCTCCTCTTATGGTGTTCGACTGTCGGGGATATGA  335

Query  403  ACCCATTGATTTCGGATTTGGTGGATATTGGAAAGCTCAAGCTGAATCTGGAACCAAATT  462
            |||||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct  336  ACCCATAGATTTCGGCTTTGGTGGATATTGGAAAGCTGAATCTGAATCTGGAACCAAATT  395

Query  463  TGATGAGATTGATTTGTCGAGCGGGGAGGAATTCACAGAGTACGATGAGAAGGGAGAATG  522
            |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  396  TGATGACATTGATTTGTCAAGCGGGGAGGAATTCACAGAGTATGATGAGAAGGGAGAATG  455

Query  523  CCCAGTAATGATATCGAATTTCCGTGCAAGCTTCAGCGTCACCAAGT  569
            |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  456  CCCAGTAATGATATCGAACTTCCGTGCAAGCTTCAGCGTCACCAAGT  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5