BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32930.2 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg353533 jgi|Araly1|353533|fgenesh1_pg.C_scaffold_7000706 701 0.0 > Ahg353533 jgi|Araly1|353533|fgenesh1_pg.C_scaffold_7000706 Length=504 Score = 701 bits (379), Expect = 0.0 Identities = 482/527 (91%), Gaps = 26/527 (5%) Strand=Plus/Plus Query 44 ATGGTGAACTATGTGCTCAAAATCACCGCTGATCTCGAGAATCTCACTAATCTCCAGCCT 103 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGTGAACTATGTGCTCAAAATCACCGCTGATCTCGAGAATCTGACTAATCTCCAGCCT 60 Query 104 TCCGGTGGCTGCGACGATTCCAACTTCCCTTACCTCTTCAAGTTGAAATGTGAAAGATGT 163 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 TCCGGTGGCTGCGACGATTCAAACTTCCCTTACCTCTTCAAGTTGAAATGTGAAAGATGC 120 Query 164 GGAGAGGTGACTCCGAAAGAAACATGTGTGACTTTGAATGAGACTTTTACTCCTCCGGGA 223 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GGAGAGGTGACTCCGAAAGAAACATGTGTTACTTTGAATGAGACTTTTACTCCTCCGGGA 180 Query 224 GGTAGGGGTACTTGTCATCTTGTTCAGAAGAAAGCAAATATTGGCT-CTGATTTGTGTAA 282 |||| ||| || | |||| | | || || | | | || |||||| Sbjct 181 GGTA-GGG-----GT-A-CTTG-T----------C--ATCTT-G-TACAGA--AGTGTAA 215 Query 283 GTTCTGTGGAAGGGAAGGGAATGTGACTATGATTCCGGGCAAAGGTCGACCTTTAACTCT 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 GTTCTGTGGAAGGGAAGGGAATGTGACTATGATTCCGGGCAAAGGTCGACCTTTAACTCT 275 Query 343 GGAAGATTCTGAGGCTGGAGAACATGCCCCTCTTATGGTGTTTGACTGTCGTGGCTATGA 402 ||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| Sbjct 276 GGAAGATTCTGAGGCTGGAGAACATGCTCCTCTTATGGTGTTCGACTGTCGGGGATATGA 335 Query 403 ACCCATTGATTTCGGATTTGGTGGATATTGGAAAGCTCAAGCTGAATCTGGAACCAAATT 462 |||||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||| Sbjct 336 ACCCATAGATTTCGGCTTTGGTGGATATTGGAAAGCTGAATCTGAATCTGGAACCAAATT 395 Query 463 TGATGAGATTGATTTGTCGAGCGGGGAGGAATTCACAGAGTACGATGAGAAGGGAGAATG 522 |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 396 TGATGACATTGATTTGTCAAGCGGGGAGGAATTCACAGAGTATGATGAGAAGGGAGAATG 455 Query 523 CCCAGTAATGATATCGAATTTCCGTGCAAGCTTCAGCGTCACCAAGT 569 |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 456 CCCAGTAATGATATCGAACTTCCGTGCAAGCTTCAGCGTCACCAAGT 502 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5