BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32940.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491400 jgi|Araly1|491400|fgenesh2_kg.7__833__AT4G32940.1 2765 0.0
Ahg481450 jgi|Araly1|481450|fgenesh2_kg.4__510__AT2G25940.1 1243 0.0
Ahg944493 jgi|Araly1|944493|scaffold_700722.1 457 2e-127
Ahg342163 jgi|Araly1|342163|fgenesh1_pg.C_scaffold_3001926 178 1e-43
Ahg942798 jgi|Araly1|942798|scaffold_603342.1 169 8e-41
> Ahg491400 jgi|Araly1|491400|fgenesh2_kg.7__833__AT4G32940.1
Length=1860
Score = 2765 bits (1497), Expect = 0.0
Identities = 1767/1889 (94%), Gaps = 51/1889 (3%)
Strand=Plus/Plus
Query 1 TCATTATATAAACAACG----TGTCTGT-TCTCTCCAATCAGATAAAAAGATTCAATTTT 55
||||||||||||||||| || ||| | ||||||||||||| |||||||||||||||
Sbjct 1 TCATTATATAAACAACGACAACGTATGTGT-TCTCCAATCAGAT-AAAAGATTCAATTTT 58
Query 56 ATTTGATA----GCCCGGCGAT-TAAAAAGATTCC--T----ATCATCATCACTCGCCGG 104
|||| ||| |||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 59 ATTTAATAGTCTGCCCGGCGATAAAAAAAGATTCCTATCAACATCATCATCACTCGCCGG 118
Query 105 CTAATGGCCACAACGATGACACGTGTCTCCGTCGGCGTCGTCC-TCTTTGTTCTCTTAGT 163
||||||||||||||||||||||||||| ||||||||||| ||| || ||| |||||||||
Sbjct 119 CTAATGGCCACAACGATGACACGTGTCGCCGTCGGCGTCTTCCTTC-TTGCTCTCTTAGT 177
Query 164 CTCGCTGGTTGCCGTCTCCGCCGCGAGAAGCGGTCCTGATGATGTTATCAAACTCCCTTC 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 CTCGCTGGTTGCCGTCTCCGCCGCGAGAAGCGGTCCTGATGATGTTATCAAACTCCCGTC 237
Query 224 GCAGGCTTCTCGCTTCTTCCGTCCTGCTGAAAACGACGACGATTCTAACTCCGGTACTAG 283
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 238 GCAGGCTTCTCGCTTCTTCCGTCCTGCTCAAGACGACGACGATTCTAACTCCGGTACTAG 297
Query 284 GTGGGCTGTTCTAGTCGCCGGATCTAGCGGATATTGGAATTACAGGCATCAGGCTGATAT 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTGGGCTGTTCTAGTCGCCGGATCTAGCGGATATTGGAATTACAGGCATCAGGCTGATAT 357
Query 344 ATGCCATGCCTATCAACTTCTGAGGAAAGGTGGATTGAAAGAGGAGAATATTGTGGTATT 403
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 ATGCCATGCTTATCAACTTCTGAGGAAAGGTGGACTGAAAGAGGAGAATATTGTGGTATT 417
Query 404 CATGTATGATGATATTGCTAACAATTACGAGAATCCAAGGCCTGGAACCATTATCAACAG 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TATGTATGATGATATTGCTAACAATTACGAGAATCCAAGGCCTGGAACCATTATCAACAG 477
Query 464 CCCTCATGGAAAAGATGTCTATCAAGGAGTTCCCAAGGATTATACTGGAGATGATGTCAA 523
||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 478 CCCTCATGGGAAGGATGTCTATCAAGGAGTTCCCAAGGATTATATTGGAGATGATGTTAA 537
Query 524 TGTTGATAATCTATTTGCTGTGATCCTTGGAGACAAAACTGCTGTTAAAGGGGGAAGTGG 583
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 538 TGTTGATAATCTATTTGCTGTGATCCTTGGAGACAAAACTTCTGTTAAAGGGGGAAGTGG 597
Query 584 GAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAGTGACCATGGTGG 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAGTGACCATGGTGG 657
Query 644 TCCTGGAGTTCTTGGGATGCCAACTTCTCCTTACCTATATGCAAATGATCTCAATGATGT 703
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCCTGGAGTTCTTGGGATGCCGACTTCTCCTTACCTATATGCAAATGATCTCAATGATGT 717
Query 704 CTTGAAGAAGAAACATGCTTTAGGAACATATAAAAGCTTGGTGTTTTATCTCGAAGCTTG 763
|||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 718 ATTGAAGAAAAAACATGCTTCAGGAACCTATAAAAGCTTGGTGTTTTATCTCGAAGCTTG 777
Query 764 CGAATCTGGAAGTATCTTTGAAGGGCTTCTTCCTGAGGGTTTGAACATCTATGCCACAAC 823
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 778 TGAATCTGGAAGTATCTTTGAAGGGATTCTTCCAGAGGGTTTGAACATCTATGCCACAAC 837
Query 824 TGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTATTGCCCTGGAGAGGAACCCAGTCC 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 TGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTATTGCCCTGGAGAGGAACCTAGTCC 897
Query 884 TCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTACAGTGTTGCTTGGATGGAAGATAG 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTACAGTGTTGCTTGGATGGAAGATAG 957
Query 944 TGGTATGCACAATTTACAGACTGAGACTCTGCACCAGCAATATGAACTTGTGAAAAGGAG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGGTATGCACAATTTACAGACTGAGACTCTGCACCAGCAATATGAACTTGTGAAAAGGAG 1017
Query 1004 GACTGCACCTGTTGGGTACTCTTATGGTTCTCATGTCATGCAATATGGCGATGTAGGAAT 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 GACTGCACCTGTTGGGTACTCTTATGGTTCTCATGTCATGCAATATGGCGATGTAGGACT 1077
Query 1064 TAGCAAGGATAATCTCGATCTTTATATGGGAACAAACCCTGCCAATGACAATTTTACCTT 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1078 TAGCAAGGATAATCTCGATCTTTATATGGGAACAAACCCTGCCAATGACAATTTCACATT 1137
Query 1124 TGCGGATGCGAATTCACTAAAGCCACCTTCAAGAGTTACAAACCAGCGTGATGCAGATCT 1183
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGTGGATGCCAATTCACTGAAGCCACCTTCAAGAGTTACAAACCAGCGTGATGCAGATCT 1197
Query 1184 TGTTCATTTTTGGGAAAAGTACCGAAAAGCACCAGAAGGTTCAGCAAGAAAAACAGAAGC 1243
||| |||||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 1198 TGTCCATTTTTGGGAAAAGTACCGGAAAGCACCAGAAGGTTCCGCCAGGAAAACAGAAGC 1257
Query 1244 TCAGAAGCAAGTACTTGAAGCCATGTCTCACAGACTTCATATTGACAATAGCGTGATACT 1303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1258 TCAGAAGCAAGTACTTGAAGCCATGTCTCACAGACTTCATGTTGACAATAGCGTGATACT 1317
Query 1304 CGTCGGAAAAATCTTGTTTGGCATTTCGAGAGGTCCTGAAGTGCTAAACAAAGTACGGTC 1363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 CGTCGGAAAAATCTTGTTTGGCATTTCGAAAGGTCCTGAAGTGCTAAACAAAGTACGGTC 1377
Query 1364 TGCTGGGCAACCTCTAGTCGATGACTGGAACTGCCTTAAAAATCAGGTGAGAGCTTTCGA 1423
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 TGCTGGGCAACCGCTAGTCGATGACTGGAACTGCCTTAAAAATCTGGTGAGAGCTTTCGA 1437
Query 1424 GAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCTTTTGCAAACAT 1483
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1438 GAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCCTTTGCAAACAT 1497
Query 1484 CTGCAATGCAGGGATTCAAA-TGGAGCAAATGGAGGAGGCAGCTTCACAGGCTTGTACCA 1542
|||||| |||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 1498 CTGCAACGCAGGGATCCGAACTG-AGCAAATGGAGGAGGCAGCTTCACAGGCTTGTACCT 1556
Query 1543 CACTGCCAACTGGTCCTTGGAGCTCGCTTAACCGTGGATTCAGTGCATAGAAACCCTAAA 1602
|| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1557 CAATCCCACCTGGTCCTTGGAGCTCGCTTCACCGTGGATTCAGTGCATAGAAACCCTAAA 1616
Query 1603 C-CGTCTTCGCATTTGTTTATACCACCAA-TCCCCAAATATTCCTATTTCGATTTGTTAT 1660
| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 1617 CAC-TCTTCGCATTTGTTTATACTACCAAATCCCCAAATATTCCTATTTCGATTTGTAAT 1675
Query 1661 GATTAAATCAGTATTCTCTCTGTATATCTCAGTATCATTTCCGTCGTCAGTGTGTAATTT 1720
|||||||||| ||||||| |||||||||||| |||||||||| | | ||| | |||
Sbjct 1676 GATTAAATCATTATTCTCCCTGTATATCTCACTATCATTTCC-T----A-TGT--A-TTT 1726
Query 1721 CAAATTATGTATTTGCCATGTACAGAAGCTTGTAGAA-CTAAAGTTGAATGTATAGAAGG 1779
| | ||||| | | | | |||||||||| ||||||||||||||||| |
Sbjct 1727 GA--T-ATGTA----C-A---A-AT--GCTTGTAGAAACTAAAGTTGAATGTATATTACA 1772
Query 1780 TTTGTATATT-ATGATGTAAACTTGGGAGTTGTCAATCTCATGGATGGTTTACTTTTTGT 1838
| | || || || ||||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 1773 TGTAAATTTTTAT-ATGTAAACTTGGGAGCTGTCAATCTTATGGATGGTTTACCTTTTGT 1831
Query 1839 AGCAGAAACAGCAGAAGAAAATAGTAAAA 1867
|||||||||||||||||||||||||||||
Sbjct 1832 AGCAGAAACAGCAGAAGAAAATAGTAAAA 1860
> Ahg481450 jgi|Araly1|481450|fgenesh2_kg.4__510__AT2G25940.1
Length=1652
Score = 1243 bits (673), Expect = 0.0
Identities = 1165/1402 (83%), Gaps = 36/1402 (3%)
Strand=Plus/Plus
Query 199 CTGATGATGTTATCAAACTCCCTTCGCAGGCTT-CTCGCTTCTTCCGTCCTGCTGAAAAC 257
||| ||| || |||||||| ||||| || |||| | | ||||||| || ||||||||
Sbjct 67 CTGGTGACGTCATCAAACTTCCTTCTCAAGCTTCCAAG-TTCTTCCACCCAACTGAAAAC 125
Query 258 GACGACGATTCTAACTCCGGTACTAGGTGGGCTGTTCTAGTCGCCGGATCTAGCGGATAT 317
||||| || | | | |||||||||||||||||| ||||||||||||||||||||
Sbjct 126 GACGATGA---T---T-C--TACTAGGTGGGCTGTTCTCGTCGCCGGATCTAGCGGATAC 176
Query 318 TGGAATTA-CAGGCATCAGGCTGATATATGCCATGCCTATCAACTTCTGAGGAAAGGTGG 376
|||||||| | | |||||||| ||| | || ||||| ||||| ||| ||| |||||||||
Sbjct 177 TGGAATTATC-GACATCAGGCGGATGTTTGTCATGCTTATCAGCTTTTGAAGAAAGGTGG 235
Query 377 ATTGAAAGAGGAGAATATTGTGGTATTCATGTATGATGATATTGCTAACAATTACGAGAA 436
| ||||||||||||||||||| || |||||||||||||| ||||| || || | |||||
Sbjct 236 AGTGAAAGAGGAGAATATTGTAGTGTTCATGTATGATGACATTGCGAAGAACGAAGAGAA 295
Query 437 TCCAAGGCCTGGAACCATTATCAACAGCCCTCATGGAAAAGATGTCTATCAA-GGAGTTC 495
|||||| |||||| |||||||| || ||| ||||| | ||||||||| || |||||||
Sbjct 296 TCCAAGACCTGGAGTTATTATCAATAGTCCTAATGGAGAGGATGTCTAT-AATGGAGTTC 354
Query 496 CCAAGGATTATACTGGAGATGATGTCAATGTTGATAATC-TATTTGCTGTGATCCTTGGA 554
|||||||||| |||||||||||||| ||||||||||| | |||| |||||||||||||||
Sbjct 355 CCAAGGATTACACTGGAGATGATGTTAATGTTGATAA-CTTATTAGCTGTGATCCTTGGA 413
Query 555 GACAAAACTGCTGTTAAAGGGGGAAGTGGGAAGGTTGTGGATAGTGGTCCTAATGATCAT 614
| ||||| ||| ||||||| ||||||||||| ||||| ||||| ||||| || ||||||
Sbjct 414 AATAAAACAGCTCTTAAAGGAGGAAGTGGGAAAGTTGTAGATAGCGGTCCAAACGATCAT 473
Query 615 ATCTTCATATTCTACAGTGACCATGGTGGTCCTGGAGTTCTTGGGATGCCAACTTCTCCT 674
||||| |||| ||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct 474 ATCTTTATATACTATAGTGATCACGGTGGCCCGGGAGTGCTCGGGATGCCAACTTCTCCG 533
Query 675 TACCTATATGCAAATGATCTCAATGATGTCTTGAAGAAGAAACATGCTTTAGGAACATAT 734
|||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 534 TACCTATATGCAAACGATCTCAATGATGTCCTGAAGAAAAAACATGCTTCAGGAACATAT 593
Query 735 AAAAGCTTGGTGTTTTATCTCGAAGCTTGCGAATCTGGAAGTATCTTTGAAGGGCTTCTT 794
|| ||||||||||||||| | || ||||| || ||||||||||| |||||||| ||| ||
Sbjct 594 AAGAGCTTGGTGTTTTATTTAGAGGCTTGTGAGTCTGGAAGTATTTTTGAAGGCCTT-TT 652
Query 795 -CCTGAGGGTTTGAACATCTATGCCACAACTGCATCAAACGCCGAAGAAAGCAGTTGGGG 853
|| |||||||| ||||| || || ||||||||||| || || | |||||| || |||||
Sbjct 653 ACCAGAGGGTTTAAACATTTACGCGACAACTGCATCGAATGCAGTAGAAAGTAGCTGGGG 712
Query 854 TACCTATTGCCCTGGAGAGGAACCCAGTCCTCC-ACCGGAGTATGAAACTTGTTTAGGTG 912
||| ||||| ||||||||||| || |||||||| || |||||||| || ||||| ||||
Sbjct 713 TACTTATTGTCCTGGAGAGGATCCTAGTCCTCCTTCC-GAGTATGAGACCTGTTTGGGTG 771
Query 913 ACTTGTACAGTGTTGCTTGGATGGAAGATAGTGGTATGCACAATTTACAGACTGAGACTC 972
|||| |||||||||||||||||||||||||||| ||| || ||||||||||| ||||||
Sbjct 772 ACTTATACAGTGTTGCTTGGATGGAAGATAGTGATATACATAATTTACAGACAGAGACTT 831
Query 973 TGCACCAGCAATATGAACTTGTGAAAAGGAGGACTGCACCTGT-TGGGTAC-TCTTATGG 1030
||||||||||||||||||| ||||||| |||||||||| | | ||| || |||| |||
Sbjct 832 TGCACCAGCAATATGAACTGGTGAAAAAGAGGACTGCAGGT-TCTGG-TAAGTCTTTTGG 889
Query 1031 TTCTCATGTCATGCAATATGGCGATGTAGGAATTAGCAAGGATAATCTCGATCTTTATAT 1090
||||||||||||| ||| ||| ||| ||||| | |||||||| || || | |||||||||
Sbjct 890 TTCTCATGTCATGGAATTTGGAGATATAGGACTCAGCAAGGAGAAGCTTGTTCTTTATAT 949
Query 1091 GGGAACAAACCCTGCCAATGACAATTTTACCTTTGCGGATGCGAATTCACTAAAGCCACC 1150
||| |||||||| |||||||| || || ||||||| | ||| |||||||||| ||| ||
Sbjct 950 GGGTACAAACCCAGCCAATGAAAACTTCACCTTTGTGAATGAAAATTCACTAAGGCCGCC 1009
Query 1151 TTCAAGAGTTACAAACCAGCGTGATGCAGATCTTGTTCATTTTTGGGAAAAGTACCGAAA 1210
||||||||||||||| |||||||| || |||||||| ||||| ||||| ||||| |||||
Sbjct 1010 TTCAAGAGTTACAAATCAGCGTGACGCGGATCTTGTCCATTTCTGGGATAAGTATCGAAA 1069
Query 1211 AGCACCAGAAGGTTCAGCAAGAAAAACAGAAGCTCAGAAGCAAGTACTTGAAGCCATGTC 1270
|||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1070 GGCACCAGAAGGTTCTGCAAGAAAAGTTGAAGCTCAGAAGCAAGTCCTTGAAGCAATGTC 1129
Query 1271 TCACAGACTTCATATTGACAATAGCGTGATACTCGTCGGAAAAATCTTGTTTGGCATTTC 1330
||||||||||||| | || |||||| | || | | || ||| |||||||||| |||
Sbjct 1130 TCACAGACTTCATGTCGATAATAGCATTCTATTAATTGGGAAACTCTTGTTTGG--TTTG 1187
Query 1331 GAGAGGTCCTGAAGTGCTAAACAAAGTACGGTCTGCTGGG-CAACCTCTAGTCGATGACT 1389
|| || ||||| || ||||| || || ||| || |||| || || || || || || |
Sbjct 1188 GACAG-TCCTGCGGTACTAAATAATGTCCGGCCTTCTGGAACA-CCGCTTGTTGACGATT 1245
Query 1390 GGAACTGCCTTAAAAATCAGGTGAGAGCTTTCGAGAGGCACTGTGGATCGCTGTCTCAGT 1449
|| ||||||||||| | |||||||| |||||||| ||||||||||||| |||||||||
Sbjct 1246 GGGACTGCCTTAAATCGCTGGTGAGAGTTTTCGAGATGCACTGTGGATCGTTGTCTCAGT 1305
Query 1450 ACGGTATCAAGCACATGAGGTCTTTTGCAAACATCTGCAATGCAGGGATTCAAATGG-AG 1508
|||| || |||||||||||||| |||||||||| ||||| ||||| ||||| |||| |
Sbjct 1306 ACGGAATAAAGCACATGAGGTCGATTGCAAACATATGCAACGCAGGAATTCAGATGGGA- 1364
Query 1509 CAAATGGAGGAGGCAGCT-TCACAGGCTTGTACCAC-ACTGCCAACTGGTCCTTGGAGCT 1566
|| |||||||| ||||| | ||||||||| |||| | | || | ||||||||||||
Sbjct 1365 CAGATGGAGGAAGCAGCAATG-CAGGCTTGTCCCACCA-TCCCTGCCAGTCCTTGGAGCT 1422
Query 1567 CGCTTAACCGTGGATTCAGTGC 1588
| ||| |||| ||||| |||||
Sbjct 1423 CTCTTGACCGCGGATTTAGTGC 1444
> Ahg944493 jgi|Araly1|944493|scaffold_700722.1
Length=1403
Score = 457 bits (247), Expect = 2e-127
Identities = 399/466 (86%), Gaps = 36/466 (8%)
Strand=Plus/Plus
Query 744 GTGTTTTATCTCGAAGCTTGCGAATCTGGAAGTATCTTTGAAGGG---CTTCTTCCTGAG 800
||||||||| || ||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 586 GTGTTTTATGTCCAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGCTTCTTCTTCCAGAG 645
Query 801 GGTTTGAACATCTATGCCACAACTGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTAT 860
||||||||||| ||||||||||||||||||||||| ||| |||||| | |
Sbjct 646 GGTTTGAACATTTATGCCACAACTGCATCAAACGCTGAAAAAAGCA------G------T 693
Query 861 TGCCCTGGAGAGGAACCCAGTCCTCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTAC 920
||||||||||||||||| ||||||||| | |||||||||||||||||| |||| | |||
Sbjct 694 TGCCCTGGAGAGGAACCTTGTCCTCCACTGAAGTATGAAACTTGTTTAGTTGAC-T-TAC 751
Query 921 AGTGTTG-CTTGGATGGAAGATAGTGGTATGCACAATTTACAGACTGAGACTCTGCACCA 979
|| | | | | | | | ||||||||||||| ||| ||||||||||||||||||||
Sbjct 752 --TG-AGAC-T--CT-GCA-ACAGTGGTATGCACATTTTTCAGACTGAGACTCTGCACCA 803
Query 980 GCAATATGAACTTGTGAAAAGGAGGACTGCACC--TGTTGGGTACTCTTATGGTTCTCAT 1037
| ||||||||| | ||||| ||||||| |||||||| | ||||||||||||||
Sbjct 804 GAAATATGAAC---T-----GGAGGTCTGCACCTGTGTTGGGTTCGCTTATGGTTCTCAT 855
Query 1038 GTCATGCAATATGGCGATGTAGGAATTAGCAAGGATAATCTCGATCTTTATATGGGAACA 1097
|||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||
Sbjct 856 GTCATGCAATATGGCGATGTAGGACTTAGCAAGGATAAGCTCGACCTTTGTATGGGAACA 915
Query 1098 AACCCTGCCAATGACAATTTTACCTTTGCGGATGCGAATTCACTAAAGCCACCTTCAAGA 1157
||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 916 AACTCTGCCAATGACAATTTCACCTTTGCGGATGCGAACTCACTCAAGCCACCTTCAAGA 975
Query 1158 GTTACAAACCAGCGTGATGCAGATCTTGTTCATTTTTGGGAAAAGT 1203
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 976 GTTACAAACCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGT 1021
Score = 226 bits (122), Expect = 5e-58
Identities = 161/178 (90%), Gaps = 9/178 (5%)
Strand=Plus/Plus
Query 1356 GTACGGTCTGCTGGGCAACCTCTAGTCGATGACTGGAACTGCCTTAAAAATCAGGTGAGA 1415
||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 1156 GTACGGTCTGCTGGGCAACAGCTAGTCGATGACTGGAACTGCCTCAAAAAT----T---T 1208
Query 1416 GCTTTCGAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCTTTT 1475
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1209 GC-TT-GAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCCTTT 1266
Query 1476 GCAAACATCTGCAATGCAGGGATTCAAATGGAGCAAATGGAGGAGGCAGCTTCACAGG 1533
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1267 GCAAACATCTGCAACGCAGGGATCCAAATGGGGCAAATGGAGGAGGCAGCTTCACAGG 1324
> Ahg342163 jgi|Araly1|342163|fgenesh1_pg.C_scaffold_3001926
Length=1401
Score = 178 bits (96), Expect = 1e-43
Identities = 384/520 (74%), Gaps = 32/520 (6%)
Strand=Plus/Plus
Query 285 TGGGCTGTTCTAGTCGCCGGATCTAGCGGA-TATTGGAATTACAGGCATCAGGCTGATAT 343
||||||||| |||| || ||||| | || |||| || ||||||||||||||||||||
Sbjct 136 TGGGCTGTTTTAGTTGCTGGATC-AAATGATTATTCTAACTACAGGCATCAGGCTGATAT 194
Query 344 ATGCCATGCCTATCA-ACTTCTGAGGAAAGGTGGAT-TGAAAGAGGAGAATATTGTGGTA 401
||||||||| ||||| | | || | ||||| || | | ||||| || || || | ||
Sbjct 195 ATGCCATGCGTATCAGA-TACTCCGAAAAGGCGG-TCTAAAAGATGAAAACATCATTGTC 252
Query 402 TTCATGTATGATGATATTGC-TAA-CAATTACG-AGAATCCAAGGCCTGGAACCATTATC 458
|| |||||||||||||| || | | | || ||||||| ||||||||| || |||
Sbjct 253 TTTATGTATGATGATATCGCGTTTTCC-T--CGGAGAATCCTAGGCCTGGAGTTATCATC 309
Query 459 AACAGCCCTCATGGAAAAGATGTCTATCAAGGAGTTCCCAAGGATTATACTGGAGATGA- 517
|| | || ||||| ||||||| ||| |||||||||| ||||| || |||| ||| |
Sbjct 310 AATAAACCAGATGGAGAAGATGTTTATAAAGGAGTTCCTAAGGACTACACTGAAGAA-AC 368
Query 518 TGTCAATGTTGATAA-T-CTATTTGCTGTGATCCTTGGAGACAAAACTGCTGTTAAAGGG 575
||| |||||||| || | |||| |||| | |||||| | ||| || ||| | |||
Sbjct 369 TGTTAATGTTGAAAACTTCTATAA--TGTGCTACTTGGAAATGAAAGTGGTGTCACAGGA 426
Query 576 GGAAGTGGGAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAG-TGA 634
|||||||| || |||||| | ||||||||||||||| | |||||||| | ||| | |||
Sbjct 427 GGAAGTGGCAAAGTTGTGAAAAGTGGTCCTAATGATAACATCTTCATCTACTAT-GCTGA 485
Query 635 CCATGGTGGTCCTGGAGTT-CTTGGGATGCCAACTTCTCCTTACCTA-TATGCAAATGAT 692
||||| | |||||| || || | |||||| ||| | | | | | |||||| |||
Sbjct 486 TCATGGAGCTCCTGGC-TTACTAGCGATGCCCACTGGTGATGAGGTCCT-TGCAAAAGAT 543
Query 693 CTCAATGATGTCTTGAAGAAGAAACAT--GCTTTAGGAA-CATATAA-AAGCTTGGTGTT 748
| ||| | |||||| |||||| ||| || | || | || || ||| | |||| |
Sbjct 544 TTTAATAAAGTCTTGGAGAAGATGCATAAGCGAAA--AAGC-TACAACAAGAT-GGTGAT 599
Query 749 TTATCTCGAAGCTTGCGAATCTGGAAGTATCTTTGAAGGG 788
||| | ||||| || |||||||||||||| |||||||||
Sbjct 600 CTATGTTGAAGCATGTGAATCTGGAAGTATGTTTGAAGGG 639
> Ahg942798 jgi|Araly1|942798|scaffold_603342.1
Length=214
Score = 169 bits (91), Expect = 8e-41
Identities = 137/159 (86%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 502 ATTATACTGGAGATGATGTCAATGTTGATAATCTATTTGCTGTG-ATCCTTGGAGACAAA 560
|||||| |||||||||||||||||||||||||||||||| | | ||| ||||||||||
Sbjct 15 ATTATAATGGAGATGATGTCAATGTTGATAATCTATTTGTTATTCATCGGTGGAGACAAA 74
Query 561 ACTGCTGTTAAAGGGGGAAGTGGGAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTC 620
|||||| | ||| | | |||||| || ||| ||||||| ||||| ||||||| |||||||
Sbjct 75 ACTGCTATCAAAAGTGAAAGTGGCAATGTTATGGATAGCGGTCCCAATGATCGTATCTTC 134
Query 621 ATATTCTACAGTGACCATGGTGGTCCT-GGAGTTCTTGG 658
||||| |||| |||||||||||||| | |||||||||||
Sbjct 135 ATATTTTACATTGACCATGGTGGTC-TAGGAGTTCTTGG 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5