BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32960.1 Length=1001 Score E Sequences producing significant alignments: (Bits) Value Ahg491398 jgi|Araly1|491398|fgenesh2_kg.7__831__AT4G32960.1 1467 0.0 > Ahg491398 jgi|Araly1|491398|fgenesh2_kg.7__831__AT4G32960.1 Length=939 Score = 1467 bits (794), Expect = 0.0 Identities = 894/942 (95%), Gaps = 7/942 (1%) Strand=Plus/Plus Query 27 ACATCGGCGGCGAATGGAGGAAGAGAGAGTGGCCGTGACCGGAGTAGGAACGACTCGATA 86 |||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 2 ACATCGACGGCGAATGGAGGAAGACAGAGTGGCCGTGACCGGAGTAGGAGCGACTCGATA 61 Query 87 CGCGCTTAAACCGGGGCGTATAAAAAGCGAGGACATACTCATCTGTATCGATGTAGATGC 146 |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct 62 CGCGCTTAAACCGGGGCGTATAAAAAGCGAAGACATACTCATCTGCATCGATGTAGACGC 121 Query 147 AGAATCGATGGTGGAGATGAAGACCACTGGAACTAATGGTAGGCCTTTGATCAGGATGGA 206 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 122 GGAATCGATGGTGGAGATGAAGACCACTGGAACAAACGGTAGGCCTTTGATCAGGATGGA 181 Query 207 GTGCGTCAAGCAAGCCATTATTCTCTTCATTCACAATAAGCTGTCCATTAATCCTGATCA 266 |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 182 GTGCGTCAAGCAAGCCATTATTCTCTTCATCCACAACAAGCTCTCCATTAATCCCGATCA 241 Query 267 TCGCTTTGCTTTCGCTACGCTCGCCAAATCAGCCGCTTGGCTTAAAAAGGAGTTCACAAG 326 |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct 242 TCGCTTTGCTTTCGCTACTCTCGCCAAATCAGCCGCCTGGCTTAAAAAGGAGTTCACCAG 301 Query 327 TGATGCTGAATCTGCTGTTGCTTCCCTTAGAGGATTGTCAGGTAATAAATCCTCTAGTCG 386 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 302 CGATGCTGAATCTTCTGTTGCTTCCCTTAGAGGATTGTCACCTAATAAATCCTCTAGTCG 361 Query 387 AGCGGATCTCACACTTCTCTTCCGAGCAGCAGCTCAGGAAGCCAAAGTTTCCAGAGCACA 446 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 362 AGCGGATCTCACACTTCTCTTCCGGGCTGCAGCTCAGGAAGCCAAAGTTTCTAGAGCACA 421 Query 447 GAACCGAATTTTCAGGGTGATTCTCATATACTGTAGGTCATCTATGAGACCAACCCATGA 506 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 422 TAACCGAATTTTCAGGGTGATTCTCATATACTGCAGGTCATCTATGAGACCAACCCATGA 481 Query 507 GTGGCCCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 566 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 GTGGACCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 541 Query 567 TCCTGATAATTGTCCACAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 626 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TCCTGATAATTGTCCTCAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 601 Query 627 AGAGTATGAAGGTTACATATTTGAGAGCGGTCAAGGGCTTGCACGGTCTGTTTTCAAGCC 686 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 602 AGAGTATGAAGGTTACATATTTGAGAGTGGCCAAGGGCTTGCACGGTCTGTTTTCAAGCC 661 Query 687 AATGTCAATGCTGTTAACTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 746 ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 CATGTCAATGTTGTTATCTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 721 Query 747 CATGTCTCTTGCAAAGAAAGTGCCTGTGACTGAGGCGGCAAGTGCTGTAGATCCTCACAA 806 || ||||||||||||||| |||||||||||||||||||||| |||| |||||| |||||| Sbjct 722 CAGGTCTCTTGCAAAGAAGGTGCCTGTGACTGAGGCGGCAAATGCTCTAGATCATCACAA 781 Query 807 TGGGAACAATATTCAGATCATAAACTAATGAAA-CACttttttttttttCTT--GTATCT 863 ||||||||| | ||||||||||||||||||||| ||||||||||||||| || |||||| Sbjct 782 TGGGAACAACAATCAGATCATAAACTAATGAAAACACTTTTTTTTTTTTTTTATGTATCT 841 Query 864 TTTGGTCATGACATGGTTGTGAGTTTCGCATGTGaaaaaaaTACTCAAAACCTGTAGTGA 923 |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 842 TTTGGTCATGACATGGTTGTAAGTTTCGCATGTGAAAAAAATACTCAAAAC-T--AGTGA 898 Query 924 CAACTTGTTCTAGATCCATCAAGTAAGAAACTCAAATGTCCA 965 ||||||||||||||||||| |||||||||||||||||||||| Sbjct 899 CAACTTGTTCTAGATCCAT-AAGTAAGAAACTCAAATGTCCA 939 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37207966992 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5