BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32980.1
Length=2268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491396 jgi|Araly1|491396|fgenesh2_kg.7__829__AT4G32980.1 3371 0.0
> Ahg491396 jgi|Araly1|491396|fgenesh2_kg.7__829__AT4G32980.1
Length=2241
Score = 3371 bits (1825), Expect = 0.0
Identities = 2127/2266 (94%), Gaps = 47/2266 (2%)
Strand=Plus/Plus
Query 1 AGGGTCTCTTCCCTAATTTAAAGCCTGCAACAGAAATGAGTGCACTTCTCTGTAGTAAAC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGGTCCCTTCCCTAATTTAAAGCCTGCAACAGAAATGAGTGCACTTCTCTGTAGTAAAC 60
Query 61 AGTAACACATCGGTCTTCTTCATGTCTTTGGATTTCTTTTTTGGATTTCGATTCTGTTTC 120
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 61 AGTAACACATCGGTCTTCTTCATGTCTTTGGATTTCTTTTTCGGATTTGGATTCTGTTTC 120
Query 121 AACCATATATTTTCTTTAGAT-AATTTTA-CT-AGA---TTCATCTCTTTCTCTATGAAC 174
||||||||| ||||||||||| ||| || | | | ||||||||||||||| |||||
Sbjct 121 AACCATATA-TTTCTTTAGATAAATACTAGATGACATTCTTCATCTCTTTCTCTGTGAAC 179
Query 175 AACATTTTAAATAAAT-GACATTTTAAGAAAGTGATTATATATAAGATTTTCTTGATTCT 233
|||||||||||||||| || |||| ||||||| | | ||||||||||||||||||||||
Sbjct 180 AACATTTTAAATAAATGGA-ATTTCAAGAAAG-AAAT-TATATAAGATTTTCTTGATTCT 236
Query 234 GATTTATCtttttttttGGTCGGAAGATCTTAAAGATATGAAAATGGATTCGTGTCATAA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GATTTATCTTTTTTTTTGGTCGGAAGATCTTAAAGATATGAAAATGGATTCGTGTCATAA 296
Query 294 ACAGAGGCAGCTCCGTACGTGATTTGGCCCTCCTTCTTTTCAACTTCTTCTTTCTTGAA- 352
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGAGGGAGCTCCGTACCTGATTTGGCCCTCCTTCTTTTCAACTTCTTCTTTCTTGAAT 356
Query 353 -TATTAAAGTTGTATTTTTCCCCTCGATAAT-ACAACTTTTGGTTTGTTTATTTAGTTAT 410
| ||||| || |||||||||| | ||| | || |||||||||| | ||||||||||
Sbjct 357 TTTTTAAA---ATA-TTTTCCCCTCAAAAATAAAAAGTTTTGGTTTGATCATTTAGTTAT 412
Query 411 AAAATGTTGCTATTTGTTGATCTAGTGCTCTGAATCTTTTAGTGAGGCAGATGATGAAGA 470
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 413 AAAATGTTGCTATTTGTTGATCTAGAACTCTGAATCTTTTGGTGAGGCAGATGATGAAGA 472
Query 471 TTATGAATTTCTTCATGAAATTATTGTAAGAA-AAAGAACATAGAGAAGCTGCGGAATGA 529
|| || | |||||||||||||| | ||| || ||||||||||||||||||||||||||
Sbjct 473 TTCTGGACTTCTTCATGAAATTGTAATAA-AAGTAAGAACATAGAGAAGCTGCGGAATGA 531
Query 530 AAGTACACTGTTCTTTCACGGAGAAAGAAGATAAATAAGCATTATCTTCTTCTTCAGTTT 589
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 532 AAGTACACTGTTCTTTCACGGAGAAAGAAGAGAAATAAGCATTTTCTTCTTCTTCAGTTT 591
Query 590 TTAACACACATTTTGGAAATTTTGATGTAAAAATTCTCTTTGGAACGTTGTGTTGTCTGA 649
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 592 TTAACACACATTTTGGAAATTTTGGTGTAAAAATTCTCTTTGGAACGTTTTGTTGTCTGA 651
Query 650 AATCTTCCCAAAGGTTCTATCAGAAGAAGAAGGATAAAGTTTCATAGAAACCCAATGGac 709
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct 652 AATCTTCCCAAAGGTTCTATCAGTAGAAGAAGGATAAAGGTTCTTAGAAACCCAATGG-- 709
Query 710 aacaacaacaacaacaacaCTTTTAGTTCTCTGGATAATGTCATGACTAACCAAAATCCT 769
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 710 -------ACAACAACAACACTTTTAGTTCTCTGGATAATGCCATGACTAACCAAAATCCT 762
Query 770 CTTCTCATGGATTTTATACCTTCAAGAGAAGATTCAACTTCATTCTCAACAATGCTTCCA 829
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CTTCTCATGGATTTTATTCCTTCAAGAGAAGATTCAACTTCATTCTCAACAATGCTTCCA 822
Query 830 TGGAA-TACCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATTTTCAATTCTAT 888
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 823 TGGAACT-CCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATCTTCAATTCTAT 881
Query 889 GCTGACTAACAAATACTTATCATCTTCTCCACGGTCTATCGATGTTCAAGATAACCGCAA 948
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 882 GCTGACTAACAAATACTTATCATCTTCTTCACGGTCTATCGATGTTCAAGATAACCGCAA 941
Query 949 --T-----G--TTGAGTTCATGGctcctcctcctcatcctcctccACTTCATCCTTTGGA 999
| | |||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 942 TGTCGAAAGCTTTGAGTTCATGGCTCCTCCT-C-C-TCCTCCTCCACTTCATCCTTTGGA 998
Query 1000 TCATTTAAGACACTATGATGATTCCTCAAACAACATGTGGGGTTTTGAAGCAAATAGTGA 1059
||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 999 TCATTTAAGGCCCTATGATGATTCCTCAAACAACATGTGGGGTTTTGAGGCAAATAGTGT 1058
Query 1060 GTTTCAGGCATTTTCAGGTGTAGTTGGTCCAAGTGAACCAATGATGTCTACATTCGGTGA 1119
||||||| ||| ||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1059 GTTTCAGACATATTCAGGTGTTGTTGGTCCAAGTGAACCAATAATGTCTACTTTCGGTGA 1118
Query 1120 AGAAGATTTCCCGTTTCTAATTTCGAATAAAAGAAACAATGAGCTTTCATTGAGTCTTG- 1178
||||||||| ||||| || |||||||||| ||||||||| |||||||||||||||||||
Sbjct 1119 AGAAGATTTTCCGTTCCTGATTTCGAATAGAAGAAACAACGAGCTTTCATTGAGTCTTGC 1178
Query 1179 CATCAGATGTTTCTGATGAATGCTCGGAGATAAGTCTTTGTGCAGCTACAAGATTAGCCT 1238
|| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1179 CA-CAGATGTTTCTGATGAATGCTCGGAGATAAGTCTTTGTGCTGCTACTAGATTAGCCT 1237
Query 1239 CAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAACGTTGTTACTCAAGGTTTCT 1298
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1238 CAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAATGTTGTCACTCAAGGTTTCT 1297
Query 1299 CTCAACTTATATTTGGCTCAAAATACCTTCACTCTGTTCAAGAAATACTATCTCATTTCG 1358
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1298 CTCAACTTATATTTGGCTCAAAGTACCTTCACTCTGTTCAAGAAATACTATCTCATTTCG 1357
Query 1359 CCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGTCAGGAGCTGCTAGTTCAGCCT 1418
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 1358 CCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGCCAGGGGCTGCTAGTTCGGCCT 1417
Query 1419 TTACTTCACGTTTTGAGAATATAACTGAGTTTCTTGATGGTGATTCTAATAACTCGGAGG 1478
|||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||
Sbjct 1418 TTACTTCACGTTTTGAGAATATTACCGAGTTTCTTGATAGCGATTCTAATAACTCGGAGG 1477
Query 1479 CGGGTTTCGGATCTACATTTCAAAGGAGAGCATTAGAAGCAAAGAAAACCCATCTCTTGG 1538
||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 1478 CGGTTTTCGGATCTACATTTCAAAGAAGAGCATTAGAAGCTAAGAAAACCCATCTCCTGG 1537
Query 1539 ATCTTCTTCAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTA 1598
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 ATCTTCTACAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTG 1597
Query 1599 TATCAGCGTTCCATGCTGCAACCGAGTTAGATCCACAGTTACACACCCGGTTTGCCCTCC 1658
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1598 TATCAGCATTCCACGCTGCAACCGAGTTAGATCCGCAGTTACACACCCGGTTTGCCCTCC 1657
Query 1659 AAACCGTTTCCTTCTTATACAAGAACCTGAGAGAGAGAATCTGCAAGAAGATAATCTCTA 1718
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 AAACCATTTCTTTCTTATACAAGAACCTGAGAGAGAGAATCTGCAAGAAGATAATCTCTA 1717
Query 1719 TGGGATCTGTATTGGAGAGAGGCAAAGACAAGACTCAAGAAACCTCTATGTTCCACCAGC 1778
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1718 TGGGATCTGTATTGGAGAGAGGCAAAGACAAGTCTCAAGAAAACTCTATGTTCCACCAGC 1777
Query 1779 ATTGCCTTCTTCAGCAGCTGAAACGAAAGAACCATCAGATTTGGAGACCTCAACGAGGTT 1838
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1778 ATTGCCTTCTTCAGCAGCTGAAACGAAAGAACCATCAGATTTGGAGACCGCAACGAGGTT 1837
Query 1839 TGCCTGAGAAATCTGTTTCGGTTCTACGGAATTGGATGTTCCAAAACTTCCTTCACCCTT 1898
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1838 TGCCTGAGAAATCTGTATCGGTTCTACGGACTTGGATGTTCCAAAACTTCCTTCACCCTT 1897
Query 1899 ACCCGAAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGG 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 ACCCGAAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGG 1957
Query 1959 TATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGATGATAGAAGAGATGT 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 TATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGATGATAGAAGAGATGT 2017
Query 2019 ATGCGGAAATGAACAAGAGGAAGCTCAATAACAGTCACATTCAACCCAACGGACCAACTC 2078
||||||||||||||||||||||||| || ||||||||| |||||||||||||| ||||||
Sbjct 2018 ATGCGGAAATGAACAAGAGGAAGCTAAACAACAGTCACCTTCAACCCAACGGAGCAACTC 2077
Query 2079 TTCGAATGCCAAAATCTGTTATGATGAGCCAAGCAATGCATAAATAAGACAACAATTGTG 2138
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2078 TTCGAATGCCAAAATCTGTTATGATGAGCCAAGCAATGCAAAAATAAGACAACAATTGTG 2137
Query 2139 TTTACCAACTTTGTGATAATTAGGCAATTGCTACTCTATGATTGCCCAAAACCTAAACCA 2198
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2138 TT-ACCAACTT-GTGATAATTAGGCAATTGCTACTATATGATTGCCCAAAACCTAAAGCA 2195
Query 2199 TGTACGACTATCATTACGTATGTTATAATTGTATATACAACTCCTT 2244
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2196 TGTACGACTATCATTACGTATGTTATAATTGTATATACAACTTCTT 2241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85398329290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5