BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33030.1
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491388 jgi|Araly1|491388|fgenesh2_kg.7__821__AT4G33030.1 2383 0.0
> Ahg491388 jgi|Araly1|491388|fgenesh2_kg.7__821__AT4G33030.1
Length=1604
Score = 2383 bits (1290), Expect = 0.0
Identities = 1518/1622 (94%), Gaps = 39/1622 (2%)
Strand=Plus/Plus
Query 126 AGGTGAATTTGTTTGATAGAATCAAGAACAAACCTTTAAAATGGCGCATCTACTTTCAGC 185
|||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1 AGGTGAGTGTGTTTGATAGAATAAAGAACAAACCTTGAAAATGGCGCATCTACTTTCAGC 60
Query 186 TTCATGCCCTTCAGTTATCTCACTTAGCAGCAGCAGCAGCAAGAATTCAGTTAAGCCGTT 245
|||||||||||| |||||||||||| ||||||||||||||||||||||| || ||
Sbjct 61 TTCATGCCCTTCTGTTATCTCACTT------AGCAGCAGCAAGAATTCAGTTAAACCCTT 114
Query 246 T-GTTTCAGGGCAGACCTTCTTCAATGCTCAGCTTCTTTCAAGATCTTCTCTCAAAGGAC 304
| |||| |||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 115 TGGTTT-AGGGAAAACCTTCTCCAATGCTCAGCTTCTTTCAAGATCTTCTCTCAAAGGAC 173
Query 305 TTCTCTTCCAAGAGAAGAAACCGAGAAAAAGCTGCGTTTTCAGAGCAACTGCTGTACCTA 364
||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||| |||||
Sbjct 174 TTCTCTTCCAAGACAAGAAACCGAGAAGAAGTTGCGTTTTCCGAGCAACTGCTACACCTA 233
Query 365 TAACCCAACAAGCACCACCCGAAACATCTACCAATAACTCATCCTCTAAACCAAAGCGTG 424
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 234 TAACCCAACAAGCACCACCCGAAACATCTACCGATAACTCATCGTCTAAACCAAAGCGTG 293
Query 425 TTATGGTCATTGGTGGAGATGGTTATTGCGGTTGGGCTACTGCTCTCCACTTGTCCAAGA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTATGGTCATTGGTGGAGATGGTTATTGCGGTTGGGCTACTGCTCTCCACTTGTCCAAGA 353
Query 485 AGAATTACGAAGTTTGCATTGTTGACAACCTTGTAAGACGTCTTTTCGACCACCAGCTTG 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 354 AGAATTACGAAGTTTGCATTGTTGACAACCTTGTAAGGCGTCTTTTCGACCACCAGCTTG 413
Query 545 GACTTGAGTCATTGACTCCTATTGCCTCCATTCATGACCGAATCAGCCGATGGAAGGCTT 604
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GACTTGAATCATTGACTCCTATTGCCTCCATTCATGACCGAATCAGCCGATGGAAGGCTT 473
Query 605 TGACAGGGAAATCAATTGAGTTGTACGTTGGTGATATCTGTGATTTCGAATTCTTAGCTG 664
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 474 TGACAGGGAAATCAATTGAGCTGTACGTTGGGGATATCTGTGATTTCGAATTCTTAGCTG 533
Query 665 AGTCTTTCAAGTCTTTTGAGCCGGATTCAGTTGTCCACTTTGGGGAACAGAGATCCGCTC 724
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 534 AGTCTTTCAAGTCTTTTGAGCCCGATTCAGTTGTCCACTTCGGGGAACAGAGATCCGCTC 593
Query 725 CTTACTCGATGATTGACCGGTCCAGAGCAGT-TTATACACAGCACAACAATGTGATTGGG 783
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 594 CTTACTCGATGATTGACCGGTCCAGAGCCGTGTT-TACACAGCACAACAATGTGATTGGG 652
Query 784 ACTCTCAACGTTCTCTTTGCTATAAAAGAGTTTGGAGAGGAGTGTCATCTTGTAAAACTT 843
|||||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||
Sbjct 653 ACTCTCAATGTTCTCTTTGCTATCAAAGAGTTCGGAGAAGAATGCCATCTTGTAAAACTC 712
Query 844 GGGACGATGGGTGAGTATGGAACTCCAAATATTGACATCGAGGAAGGTTATATAACCATA 903
||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||
Sbjct 713 GGGACGATGGGTGAGTACGGAACTCCAAATATCGATATCGAGGAAGGTTATATAACGATA 772
Query 904 ACCCACAACGGTAGAACTGACACTTTGCCATACCCCAAGCAAGCTAGCTCCTTTTATCAT 963
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 773 ACCCACAATGGTAGAACTGACACTTTGCCATACCCGAAGCAAGCTAGCTCCTTCTATCAT 832
Query 964 CTTAGCAAAGTTCATGATTCGCACAACATTGCTTTTACTTGCAAGGCTTGGGGTATTAGA 1023
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CTTAGCAAAGTTCACGATTCGCACAACATTGCTTTTACTTGCAAGGCTTGGGGTATTAGA 892
Query 1024 GCCACTGATCTCAACCAAGGAGTTGTTTATGGAGTGAAGACTGATGAGACAGAGATGCAT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GCCACTGATCTCAACCAAGGAGTTGTTTATGGAGTGAAGACTGATGAGACAGAGATGCAT 952
Query 1084 GAGGAACTCCGTAACCGACTGGATTACGATGCTGTGTTTGGTACAGCACTTAACCGGTTC 1143
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 953 GAGGAACTCCGTAACCGACTAGATTACGATGCTGTGTTCGGTACAGCACTTAACCGGTTC 1012
Query 1144 TGTGTGCAAGCTGCTGTTGGTCACCCACTTACAGTTTATGGTAAAGGTGGTCAGACGAGA 1203
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1013 TGTGTGCAAGCCGCTGTTGGTCACCCACTTACAGTTTATGGTAAAGGTGGTCAGACAAGA 1072
Query 1204 GGCTACCTCGATATAAGAGACACGGTTCAATGTGTTGAGATCGCTATAGCAAACCCGGCA 1263
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1073 GGCTACCTCGATATAAGAGACACGGTTCAATGTGTTGAGATCGCTATAGCGAACCCGGCA 1132
Query 1264 AAAGCTGGTGAGTTCCGGGTCTTCAACCAATTTACAGAACAGTTTTCAGTCAATGAACTG 1323
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1133 AAAGCTGGTGAGTTCCGGGTCTTCAACCAATTCACTGAACAGTTTTCAGTCAATGAACTG 1192
Query 1324 GCTTCACTCGTCACTAAAGCGGGTTCAAAGCTTGGGCTAGACGTGAAAAAGATGACGGTG 1383
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1193 GCTTCACTCGTCACTAAAGCGGGTTCAAAGCTTGGGCTTGACGTGAAAAAGATGACGGTG 1252
Query 1384 CCTAACCCGAGAGTGGAGGCAGAAGAACATTACTACAACGCAAAGCACACTAAGCTGATG 1443
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1253 CCTAACCCGAGAGTGGAGGCAGAAGAACATTACTACAACGCAAAGCACACAAAGCTGATG 1312
Query 1444 GAACTTGGACTTGAGCCTCACTATCTATCTGACTCACTTCTTGATTCGTTGCTCAACTTT 1503
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1313 GAACTAGGACTTGAGCCTCACTATCTATCTGAGTCACTTCTTGATTCGTTGCTCAACTTT 1372
Query 1504 GCTGTTCAGTTTAAAGATCGTGTGGACACGAAACAAATCATGCCTAGTGTTTCCTGGAAG 1563
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1373 GCTGTTCAGTTTAAAGATCGTGTGGACACGAAACAAATCATGCCTACTGTTTCTTGGAAA 1432
Query 1564 AAGATTGGCGTCAAGACTAAGTCCATGACCACATAAAGTGCAGACCAATATTACACATAA 1623
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1433 AAGATTGGCGTCAAGACTAAGTCCATGACCGCCTAAAGTGCAGATCAATATTACAC---- 1488
Query 1624 GGAGAGATTATGAAAGAGATGATGTGTTGTTTGGTATCTTCAAACTTCATTTCTGCAAAA 1683
| | | | | | ||| |||| | ||||||||||||||||| ||||||
Sbjct 1489 G-AT-G-T---G-------T--TGT-TTGT--G--ATCTTCAAACTTCATTTGAGCAAAA 1528
Query 1684 GACTTGCTAGGCTTAAGAGGTTTT-GTCCATATTACATTGTGCAGGTTCTTTAATGTTAG 1742
|||||||||| ||||||||||||| |||||| ||||||||||||| ||| | ||||
Sbjct 1529 GACTTGCTAG-CTTAAGAGGTTTTTGTCCATC---CATTGTGCAGGTTTTTTGCTATTAG 1584
Query 1743 AT 1744
||
Sbjct 1585 AT 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5