BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33220.1 Length=1875 Score E Sequences producing significant alignments: (Bits) Value Ahg888769 jgi|Araly1|888769|Al_scaffold_0007_755 2516 0.0 > Ahg888769 jgi|Araly1|888769|Al_scaffold_0007_755 Length=1578 Score = 2516 bits (1362), Expect = 0.0 Identities = 1509/1581 (95%), Gaps = 6/1581 (0%) Strand=Plus/Plus Query 68 ATGTCATGTTTGAAGTATTTCTTGATCTTATTGATGTTGGGACTGTGTGTCTCATCGGAG 127 ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct 1 ATGTCATGTTTGAAGTATTTCTTGATCTTCTTGATATTGGGTCTGTGTGTCTCATCGGAG 60 Query 128 GAGAATTTTCAATATGACTACTTGAAAGTTCCGGCAAGCGAGTTTGTGAGCTCCATAAAC 187 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAGAATTTGCAATATGACTACTTGAAAGTTCCGGCAAGCGAGTTTGTGAGCTCCATAAAC 120 Query 188 ACAATTGTGGTAGTGATAAGACAAGTGAGTTCAATTTTGTCTCAGTTCGCTGATTTCAGC 247 |||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 121 ACAATTGTGGAAGTAATAAGACAAGTGAGTTCGATTTTGTCTCAGTTCGCGGATTTTAGC 180 Query 248 GGAGATCGCCGGCTGCAGAATGCGGTTTCCGATTGCCTTGATCTGCTTGACTTTTCTTCA 307 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGAGGCCGCCGGCTGCAGAATGCGGTTTCCGATTGCCTTGATCTGCTTGACTTTTCTTCA 240 Query 308 GAGGAGCTCACTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGGTAAGGGCAACGGAACA 367 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAGGAGCTGAGTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGGTAAGGGCAACGGAACA 300 Query 368 GGGGACGTTGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGCCACT 427 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 301 GGGGACGTGGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGACACT 360 Query 428 TGTATGGAAGGCTTCGATGGTACCTCTGGTCTCGTAAAATCCCTTGTCGCTGGCAGTCTC 487 ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| Sbjct 361 TGTATGGAAGGCTTCCAGGGTACCTCTGGTCTCGTCAAATCCCTTGTCGCTGGCAGTCTT 420 Query 488 GATCAACTATATTCTATGCTTAGGGAATTGTTACCACTTGTGCAACCAGAGCAGAAACCC 547 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 421 GATCAACTATATTCTATGCTTAGGGAATTGTTACCACTTGTGCAACCCGAGCAGAAACCC 480 Query 548 AAGGCTGTTTCTAAACCTGGCCCTATTGCTAAAGGACCGAAGGCACCACCTGGCCGTAAA 607 ||| | ||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||| Sbjct 481 AAGCCAATTTCTAAACCTGGCCCTATTGCTAAAGGACCAAAGGCCCCACCTGCCCGCAAA 540 Query 608 CTCAGAGACACCGACGAAGACGAAAGCCTTCAATTCCCAGACTGGGTCAGACCGGACGAT 667 || |||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 541 CTTAGAGACACCGACGACGACGAAAGCCTTCAATTCCCAGACTGGGTTAGATCGGAAGAT 600 Query 668 CGTAAACTATTAGA-ATCAAACGGTAGGACTTACGACGTTAGTGTAGCATTGGATGGGAC 726 || ||||||||||| | |||||||||||| |||||||||| | ||||||||||||||||| Sbjct 601 CGCAAACTATTAGAGA-CAAACGGTAGGAGTTACGACGTTTGCGTAGCATTGGATGGGAC 659 Query 727 AGGCAACTTCACAAAGATAATGGACGCCATAAAGAAAGCTCCTGATTATAGCTCGACACG 786 | |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| Sbjct 660 ATGCAACTTCACAAAGATAATGGACGCCATTAAGGAAGCTCCTGATTATAGCTCCACACG 719 Query 787 TTTCGTCATATACATTAAAAAA-GGTTTATATTTGGAGAATGTTGAGATCAAGAAGAAGA 845 |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 720 TTTCGTTATATACA-TAAAAAAGGGTTTATATTTGGAGAATGTTGAGATCAAGAAGAAGA 778 Query 846 AATGGAACATTGTAATGTTAGGTGATGGCATTGACGTGACTGTTATTTCCGGTAACCGCA 905 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 779 AATGGAACATTGTAATGATAGGTGATGGCATTGATGTGACTGTTATTTCCGGTAACCGCA 838 Query 906 GCTTCATCGATGGTTGGACCACTTTCCGATCAGCTACATTCGCGGTAAGCGGAAGAGGAT 965 | ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 839 GTTTCATTGACGGGTGGACCACTTTCCGATCAGCTACATTTGCGGTAAGCGGAAGAGGAT 898 Query 966 TCTTAGCAAGAGATATAACGTTCCAGAACACAGCAGGGCCAGAGAAGCATCAGGCGGTAG 1025 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 899 TCCTAGCAAGAGATATAACGTTCCAGAACACAGCGGGGCCAGAGAAGCATCAGGCGGTAG 958 Query 1026 CACTGAGATCAGACTCTGACCTCTCTGTGTTCTTCAGATGTGCGATGAGGGGTTATCAAG 1085 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 959 CACTGAGATCAGACTCTGACCTCTCTGTGTTCTACAGATGTGCGATGAGGGGTTATCAAG 1018 Query 1086 ATACACTCTACACGCACACCATGCGTCAGTTCTACCGTGAGTGCACCATCACGGGAACAG 1145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 ATACACTCTACACGCACACCATGCGTCAGTTCTACCGTGAGTGCACCATCACGGGAACAG 1078 Query 1146 TAGATTTTATATTTGGGGATGGGACTGTTGTGTTTCAAAACTGTCAAATTTTGGCTAAAA 1205 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1079 TAGATTTTATATTTGGGGATGGGACTGTTGTGTTTCAAAATTGTCAAATTTTGGCTAAAA 1138 Query 1206 GAGGACTCCCTAACCAAAAGAACACCATCACTGCACAAGGCCGGAAAGATGTCAACCAAC 1265 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1139 GAGGACTCCCTAACCAAAAGAACACCATCACTGCACAAGGCCGGAAAGATGTGAACCAAC 1198 Query 1266 CCTCAGGATTCTCAATTCAATTCAGCAATATCTCGGCGGACGCAGATTTGGTCCCATACC 1325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CCTCAGGATTCTCAATTCAATTCAGCAATATCTCGGCGGACGCAGATTTGGTCCCATACC 1258 Query 1326 TAAACACGACA-AGGACGTATCTAGGAAGGCCATGGAAGCTATATTCGAGAACGGTTTTC 1384 ||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1259 TAAACACGACACAG-ACGTATCTAGGAAGGCCATGGAAGCTATATTCAAGAACAGTTTTC 1317 Query 1385 ATTAGGAACAATATGAGCGACGTTGTGAGACCCGAAGGATGGCTTGAGTGGAACGCTGAT 1444 |||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1318 ATTAGGAATAACATGAGCGACGTTGTGAGACCAGAAGGATGGCTCGAGTGGAACGCTGAC 1377 Query 1445 TTTGCGTTGGACACACTCTTCTACGGAGAGTTCATGAACTACGGGCCTGGTTCAGGACTC 1504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 TTTGCGTTGGACACACTCTTCTACGGAGAGTTCATGAACTACGGGCCTGGTTCAGGACTA 1437 Query 1505 AGCAGCCGAGTCAAATGGCCTGGTTACCACGTCTTTAACAACTCGGATCAGGCTAACAAC 1564 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1438 AGCGGCCGAGTCAAATGGCCTGGTTACCACGTCTTTAACAACTCGGAGCAGGCTAACAAC 1497 Query 1565 TTCACCGTTTCTCAGTTCATTAAAGGAAATCTTTGGCTGCCTTCTACGGGAGTAACGTTT 1624 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1498 TTCACCGTTTCTCAGTTCATTAAAGGAAATCTTTGGCTGCCTTCTACGGGGGTAACGTTT 1557 Query 1625 AGTGATGGCTTGTATATCTAA 1645 ||||| |||||| |||||||| Sbjct 1558 AGTGACGGCTTGAATATCTAA 1578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70428863005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5