BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33300.1
Length=2946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944602 jgi|Araly1|944602|scaffold_700831.1 3579 0.0
Ahg944603 jgi|Araly1|944603|scaffold_700832.1 252 1e-65
Ahg935114 jgi|Araly1|935114|scaffold_403102.1 143 8e-33
> Ahg944602 jgi|Araly1|944602|scaffold_700831.1
Length=2494
Score = 3579 bits (1938), Expect = 0.0
Identities = 2301/2476 (93%), Gaps = 25/2476 (1%)
Strand=Plus/Plus
Query 367 TTGACTTGGTGGTATCCAATGGCCATCACCGATTTTTTCGCCGGTGAAATTGCGACGGAG 426
||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 6 TTGACTTCGT--T-TCCAATGGCCGTCACCGATTTTTTCGCCGGTGAAATTGCGACGGAG 62
Query 427 CTCCTGAAGCAGCTCTTTACGATATCT-ACAACGGCGTGGAGATACAAAAACACCGCCAA 485
|||||||||||||| ||| ||||||| ||| || |||| |||||||| ||| |||
Sbjct 63 CTCCTGAAGCAGCTGTTTTTGATATCTGCCAA-AGCATGGAAATACAAAAGCACAGCC-G 120
Query 486 ACAA-CTCCTCACCTTGATCGATAG-CATTCGACCGACGATCAAGGAGATTCAATACAGC 543
| || ||| || ||||||| || | |||| ||||||||||||||||||||| |||||
Sbjct 121 ATAACCTCATCGCCTTGATTGA-GGATATTCAACCGACGATCAAGGAGATTCAGTACAGT 179
Query 544 GGCGTGGAGCTTCCTGCTCACCGCCAAGCTCAAATCGGTATGCTCTTCGATA-CTTTAGA 602
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| ||
Sbjct 180 GGCGTGGAGCTTCCTGCTCACCGCCAGGCTCAAATCGGTATGCTCTTTGATACCTTT-GA 238
Query 603 GAAAGGCAAGAAGCTCACTGACAAAGTCCTTAGCTCTAAG-CGATGGAATTTATAT-CGA 660
|||||||||||| ||||| || |||||||||||||| | || ||||| | | | ||
Sbjct 239 GAAAGGCAAGAAACTCACCGAGAAAGTCCTTAGCTC-CCGTCGCTGGAACATGT-TCCGT 296
Query 661 CAGCTAACCCTAGCCAGAAAAATGGAGAAGCTAGAGAAGACCATCTCTAATTTCCTTAAA 720
||||||||| |||| || |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 297 CAGCTAACCTTAGCGAGGAAAATGGAGAAGCTCGAGAAGACCATCACTAATTTCCTTAAA 356
Query 721 AATGAGGTCTTT-ACACATATCCTCGCTGACGTTCATCATCTCCGGGCCGATACCAG-TG 778
| | | ||| | |||||||||||||||||||||| ||||||||||||| || | |
Sbjct 357 GCTCCGAT-TTTGGCCCATATCCTCGCTGACGTTCATCGTCTCCGGGCCGATTCC-GAAG 414
Query 779 TGCGTTTGGATCGGGTTGACATGAGCCTCGACAGGGTGATTCAGCAAGTGGGTTCCATGA 838
|||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 415 AGCGTTTGGATCGTGTTGACAGGAGCCTCGAGAGGGTGATTCAGCAAGTGGGTTCCATGA 474
Query 839 AAATTGGGGGAGGTGGCTTGA-TATCAGAGGCCATGAAGAGAGCCGAGGCTATGGAGATT 897
|||| || ||||| || ||| || ||||||||||||||||||||||||||||||||||
Sbjct 475 AAATCGGCGGAGGAGGGATGATTA-GAGAGGCCATGAAGAGAGCCGAGGCTATGGAGATT 533
Query 898 GAGACCAACGACGATTCGGAGAAATTTGGGGTTGGATTGGAATTGGGAAAGGTTAAGGTT 957
|||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 534 GAGACCAACGACGATTTGGAGAAATTTGGTGTTGGATTGGAATTGGGAAAGATCAAGGTT 593
Query 958 AAGAAGATGATGTTCGAATCTCAAGGAGGGGTTTTTGGGATCAGTGGAATGGGCGGTGTT 1017
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 594 AAGAAGATGATGTTCGAAGCTCAAGGAGGGGTTTTTGGTATCAGTGGAATGGGCGGTGTT 653
Query 1018 GGTAAAACCACTCTTGCCAAAGAACTTCAACGGGACCATGAAGTCCAATGTCACTTTGAG 1077
||||||||||||||||||| ||| ||| ||||||||||| |||||| ||||||||| |||
Sbjct 654 GGTAAAACCACTCTTGCCAGAGAGCTTGAACGGGACCATCAAGTCCGATGTCACTTCGAG 713
Query 1078 AACCGGATTTTGTTTCTGACTGTATCACAATCTCCGCTTCTTGAGGAGCTGAGGGAACTT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 714 AACCGGATTTTGTTTCTGACTGTATCACAATCTCCGCTTCTTGAGGAGCTGAGGGAACAT 773
Query 1138 ATATGGGGTTTCTTATCTGGTTGTGAAGCTGGAAATCCTGTTCCTGACTGTAATTTTCCG 1197
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
Sbjct 774 ATATGGGGTTTCTTATCTGGTTGTGAAGCTGGAAATCCTGTTCCAGACTGCAGTTTTCAG 833
Query 1198 TTTGATGGCGCGCGTAAGCTCGTGATTCTTGATGATGTTTGGACCACACAGGCCCTGGAC 1257
||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTTGAGGGCACCCGGAAGCTCGTGATTCTTGATGATGTTTGGACCACACAGGCCCTGGAC 893
Query 1258 CGCTTGACCTCGTTTAAGTTTCCTGGTTGCACAACTCTTGTGGTCTCACGATCCAAACTC 1317
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CGCTTGACGTCCTTTAAGTTTCCTGGTTGCACAACTCTTGTGGTCTCACGATCCAAACTC 953
Query 1318 ACTGAGCCTAAATTCACTTATGATGTCGAAGTACTGAGTGAAGATGAAGCAATCTCTCTC 1377
|| ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 954 ACAGAGCCTAAATTCACTCATGATGTCGAAGTACTAAGTGAAGACGAAGCAATCTCTCTC 1013
Query 1378 TTCTGTCTCTGTGCTTTCGGTCAGAAATCTATCCCTCTTGGTTTCTGCAAAGATCTGGTT 1437
|||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 1014 TTCTGTCTCTGTGCATTCGGTCAGAAATCTGTCCCTCCTGGTTTCTGCAATGATCTGGTT 1073
Query 1438 AAGCAGGTTGCTAATGAATGTAAAGGGCTTCCTTTAGCTCTCAAAGTCACGGGTGCTTCA 1497
|||||||||||||||||||| ||||| || ||||||||||||||||| || |||||||||
Sbjct 1074 AAGCAGGTTGCTAATGAATGCAAAGGTCTACCTTTAGCTCTCAAAGTTACAGGTGCTTCA 1133
Query 1498 TTAAATGGCAAACCTGAAATGTACTGGAAGGGCGTATTGCAGAGGTTATCAAAAGGTGAA 1557
||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||||
Sbjct 1134 TTAAATGACAAACCTGAAAAATACTGGGAGGGCGTATTGCAGAGGTTATCAAGAGGTGAA 1193
Query 1558 CCTGCTGATGACTCTCACGAGAGTAGATTGCTTCGTCAAATGGAAGCTAGTCTAGACAAT 1617
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1194 CCTGCTGATGACTCTCACGAGAGTAGATTGCTTAATCAAATGGAAGCTAGTCTAGAAAAT 1253
Query 1618 CTCGACCAGACGACCAAAGATTGTTTCTTGGATCTTGGCGCCTTCCCTGAAGACAGGAAG 1677
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1254 CTCGACCAAACAACCAAAGATTGTTTCTTGGATCTTGGTGCATTCCCTGAAGACAGGAAG 1313
Query 1678 ATTCCTCTTGATGTTCTCATCAACATTTGGATTGAGTTACATGATATAGATGAAGGAAAT 1737
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1314 ATTCCTCTTGATGTTCTCATCAACATGTGGATTGAGTTACATGATATAGATGAAGGAAAT 1373
Query 1738 GCTTTTGCCATCCTTGTTGATTTGTCACACAAGAATCTCCTTACTCTTGGGAAGGATCCA 1797
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GCTTTTGCCATCCTCGTTGATTTGTCACACAAGAATCTCCTTACTCTTGGGAAGGATCCA 1433
Query 1798 CGGCTTGGCTCTTTGTACGCAAGCCACTATGATATATTTGTGACACAGCATGATGTTCTG 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1434 CGGCTTGGCTCTTTGTACGCAAGCCACTATGATATATTTGTGACACAGCATGACGTTCTG 1493
Query 1858 CGAGACCTAGCTCTTCATTTAAGCAATGCAGGGAAAGTAAACAGAAGAAAGCGGTTGCTG 1917
|||||| |||| |||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 1494 CGAGACTTAGCACTTCATATAAGCAACGTAGGGAAAGTAAACAGAAGAAAGCGGTTGCTG 1553
Query 1918 ATGCCGAAAAGAGAGTTAGATCTTCCAGGAGATTGGGAAAGGAACAATGATGAGCATTAC 1977
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 1554 ATGCCGAAAAGAGAGTTAGAGCTTCCAAGAGAATGGGAAAGGAACAATGATGAGCATTAC 1613
Query 1978 ATTGCCCAGATTGTCTCTATTCATACTGGGGAAATGAATGAAATGCAATGGTTTGACATG 2037
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 ATCGCCCAGATTGTCTCTATTCATACTGGGGAAATGAATGAAATGCAATGGTTTGACATG 1673
Query 2038 GAGTTCCCCAAGGCAGAGATTCTAATATTGAACTTCTCTTCAGACAAGTATGTTCTTCCG 2097
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1674 GAGTTCCCCAAGGCAGAGATTCTAATACTGAATTTCTCTTCAGACAAGTATGTTCTTCCG 1733
Query 2098 CCTTTTATCAGTAAGATGAGCCGGCTTAAGGTCCTAGTGATTATCAACAACGGCATGTCT 2157
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1734 CCTTTTATCACTAAGATGAGCCGGCTTAGGGTCCTAGTGATTATCAACAACGGCATGTC- 1792
Query 2158 CCC-GCGGTTCTCCATGACTTTTCAATATTTGCTC-ATTTGTCGAAACTAAGAAGTCTCT 2215
||| ||||||||||| ||||||||||||||||| | ||||||||||| |||| |||||||
Sbjct 1793 CCCTGCGGTTCTCCACGACTTTTCAATATTTGC-CAATTTGTCGAAATTAAGGAGTCTCT 1851
Query 2216 GGCTAGAGAGGGTTCACGTCCCTCAACTCTCCAACTCAACCACCCCCTTGAAAAATCTCC 2275
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1852 GGCTCGAGAGGGTTCACGTCCCTGAACTCTCCAACTCAACCACCCCCTTGAAAAATCTCC 1911
Query 2276 ACAAGATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGACTTGACG 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1912 ACAAGATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGAGTTGACG 1971
Query 2336 TGGCAGATATCTTCCCAAAATTGGGCGATCTGACAATAGATCACTGTGATGATCTCGTGG 2395
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1972 TGGCCGATATCTTCCCAAAATTGGGGGATCTGACGATAGATCACTGTGATGATCTCGTGG 2031
Query 2396 CACTACCTTCAAGCATTTGCGGACTGACCTCCCTTAGCTGCTTAAGCATAACAAATTGTC 2455
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2032 CACTACCTTCAAGCATTTGCGGATTGACCTCTCTTAGCTGCTTAAGCATAACAAATTGTC 2091
Query 2456 CACGCCTCGGTGAATTGCCCAAGAACCTCAGTAAGCTACAAGCTCTCGAAATCTTAAGGC 2515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 CACGCCTCGGTGAATTGCCCAAGAACCTCAGTAAGCTACAAGCTCTCGAAATCTTAAGGC 2151
Query 2516 TATATGCTTGCCCTGAGCTAAAGACATTACCTGGAGAAATATGTGAGCTTCCTGGGCTTA 2575
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 2152 TATATGCTTGCCCTGAGCTAAAGACATTACCTGGAGAAATCTGTGAGCTTCTTCGGCTTA 2211
Query 2576 AGTATCTCGACATCTCACAATGTGTCAGCCTGAGTTGTCTTCCAGAGGAAATAGGAAAGC 2635
|||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2212 AGTACCTCGATATCTCACAATGCGTTAGCCTGAGTTGTCTTCCAGAGGAAATAGGAAAGC 2271
Query 2636 TAAAGAAGCTTGAGAAGATCGACATGAGAGAATGTTGCTTCTCGGATAGACCGAGCTCTG 2695
||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 2272 TAAAGAAGCTTGAGAAGATCGACATGAGAGAATGTTGTTTTTCGGGTAGACCGAGCTCTG 2331
Query 2696 CTGTTTCACTGAAGTCTCTGCGCCATGTAATCTGCGATACCGACGTTGCATTTATGTGGG 2755
||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 2332 CTGTTTCACTGAAATCTCTGCGCCATGTAATATGTGATACAGACGTTGCATTTATGTGGG 2391
Query 2756 AAGAAGTTGAGAAGGCTGTTCCAGGGTTAAAGATCGAAGCTGCTGAGAAATGCTTCAGCC 2815
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2392 AAGAAGTTGAGAAGGCTGTTCCAGGATTAAAGATAGAAGCTGCTGAGAAATGCTTCAGCC 2451
Query 2816 TAGACTGGCTTGACGA 2831
|||| |||||||||||
Sbjct 2452 TAGATTGGCTTGACGA 2467
> Ahg944603 jgi|Araly1|944603|scaffold_700832.1
Length=470
Score = 252 bits (136), Expect = 1e-65
Identities = 146/151 (97%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 2492 TACAAGCTCTCGAAATCTTAAGGCTATATGCTTGCCCTGAGCTAAAGACATTACCTGGAG 2551
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 149 TACAAGCTCTCGAAATCTTAAGGCTGTATGCTTGCCCTGAGCTAAAGACATTACCTGGAG 208
Query 2552 AAATATGTGAGCTTCCTGGGCTTAAGTATCTCGACATCTCACAATGTGTCAGCCTGAGTT 2611
|||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 209 AAATCTGTGAGCTTCCTGGGCTTAAGTACCTAGACATCTCACAATGTGTTAGCCTGAGTT 268
Query 2612 GTCTTCCAGAGGAAATAGGAAAGCTAAAGAA 2642
|||||||||||||||||||||||||||||||
Sbjct 269 GTCTTCCAGAGGAAATAGGAAAGCTAAAGAA 299
Score = 217 bits (117), Expect = 5e-55
Identities = 138/148 (93%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 2685 ACCGAGCTCTGCTGTTTCACTGAAGTCTCTGCGCCATGTAATCTGCGATACCGACGTTGC 2744
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 300 ACCGAGCTCTGCTGTTTCACTGAAATCTCTGCGCCATGTAATATGCGATACCGACGTTGC 359
Query 2745 ATTTATGTGGGAAGAAGTTGAGAAGG-CTGTTCCAGGGTTAAAGATCGAAGCTGCTGAGA 2803
|||||||||||| |||||| |||||| | |||||||| ||||||| |||||||||||||
Sbjct 360 ATTTATGTGGGACGAAGTTAAGAAGGTC-GTTCCAGGACTAAAGATTGAAGCTGCTGAGA 418
Query 2804 AATGCTTCAGCCTAGACTGGCTTGACGA 2831
|||||||||||||||| |||||||||||
Sbjct 419 AATGCTTCAGCCTAGATTGGCTTGACGA 446
Score = 191 bits (103), Expect = 3e-47
Identities = 115/121 (95%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 2274 CCACAAGATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGACTTGA 2333
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 15 CCACAACATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGAGTTGA 74
Query 2334 CGTGGCAGATATCTTCCCAAAATTGGGCGATCTGACAATAGATCACTGTGATGATCTCGT 2393
|||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 75 CGTGGCCGATATCTTCTCAAAATTGGGGGATCTGACGATAGATCACTGTGATGATCTCGT 134
Query 2394 G 2394
|
Sbjct 135 G 135
> Ahg935114 jgi|Araly1|935114|scaffold_403102.1
Length=247
Score = 143 bits (77), Expect = 8e-33
Identities = 163/201 (81%), Gaps = 20/201 (10%)
Strand=Plus/Plus
Query 44 CTCCGCCATAGTCCGAAACAGAGGCATCACAGCAACCCAACTCGAACCCTCGATCTCCTC 103
|||| |||| ||| ||||| ||||| || || ||| ||||||||||||||||||||||||
Sbjct 14 CTCCACCATGGTCAGAAACGGAGGCCTCGCAACAATCCAACTCGAACCCTCGATCTCCTC 73
Query 104 ATCACTCTCACCACCACCAC-CACCGCCACTCTTTTTCGACTCCCTCTTCCACAGAATCT 162
|||||||||||||||||||| || | | || | | |||||| ||| | ||| ||
Sbjct 74 ATCACTCTCACCACCACCACTCA--G----T-TTCT---A-TCCCTCCTCCGCTGAAACT 122
Query 163 TCAAATCCTACCGCCGGAGCTCGCCGT--A--A--TCCATTTCGGAGATGTCGTATGGG- 215
|||| ||| |||||||||||||||||| | | |||||||| ||||||||| |||||
Sbjct 123 TCAATTCCCACCGCCGGAGCTCGCCGTGGACTAGATCCATTTCAGAGATGTCG-ATGGGG 181
Query 216 TTGTAGATCACTAGATCTATC 236
||||| ||||||||||| |||
Sbjct 182 TTGTAAATCACTAGATCCATC 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111223515400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5