BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33540.1 Length=1408 Score E Sequences producing significant alignments: (Bits) Value Ahg491332 jgi|Araly1|491332|fgenesh2_kg.7__765__AT4G33540.1 1810 0.0 > Ahg491332 jgi|Araly1|491332|fgenesh2_kg.7__765__AT4G33540.1 Length=1215 Score = 1810 bits (980), Expect = 0.0 Identities = 1141/1217 (94%), Gaps = 18/1217 (1%) Strand=Plus/Plus Query 33 AGAGACGAGGATCAATCACCATTCTCATGGCTTCAGCTTCTTTCTCTGCGGTTTCTTCGC 92 ||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||| Sbjct 1 AGAGACGAGAATCAATCACCAGTCTCATGGCTTCAGCTTCTTTCCCTGCGATTTCTTCGC 60 Query 93 TCTCGTATCAATTCCGTTCAAAAGAAGCGATCTTTTCATCGAAAGCTTCCTGTTTTAGCT 152 |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | Sbjct 61 TCTCGTATCACTTCCGTTCAAAAGAAGCCATCTTTTCATCGAAAGCTTCCTCTTTTAGTT 120 Query 153 CGACGGCTTTATCAGGAAGGAGAGT-GTT--TGGATCTATCAAAGCAGCTCAAGTGACAA 209 ||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||||| Sbjct 121 CGACGGCTTTATCAGGAAGGAGAGTATTTGGTGGATCTGTCAAAGCAGCTCATGTGACAA 180 Query 210 GCCATGAGAATCCTAGAAGACGAACTCAGAACGTCGAAGGAGATATATTTGTTGACAATA 269 ||||| |||| ||| || |||| ||||||||||||||||||||||||| || ||||||| Sbjct 181 GCCATCAGAACCCTCGACGACGCTCTCAGAACGTCGAAGGAGATATATTCGTCGACAATA 240 Query 270 CTTGTATTGATTGTGATACATGTCGTTGGATGGTTCCGGATTTATTCACTCGAGTGGACA 329 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 241 CTTGTATTGATTGTGATACATGTCGTTGGATGGTTCCGAAATTATTCACTCGAGTGGACA 300 Query 330 ACATGTCTGCGGTTAC-AAAGCAACCAACTTGTAAGGAGGAAAGACTGAATGCTCTTCAG 388 ||||||| |||||||| ||| |||||| | |||||||||||||||||||||||||||||| Sbjct 301 ACATGTCCGCGGTTACTAAA-CAACCAGCCTGTAAGGAGGAAAGACTGAATGCTCTTCAG 359 Query 389 GCCTTACTATCTTGTCCGACGGGCTCTATTCGCACTCAAACTCCACCTGCTGACATAGGG 448 ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 GCCTTACTATCATGTCCGACGGGCTCTATTCGCACTGAAACTCCACCTGCTGACATAGGG 419 Query 449 GAAGCTCAAGAGACCTTTCCACTTGTAGTGGACAAAGACACACTTCCTGGCGTTTTTCAT 508 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 420 GAAGCTCAAGAGACCTTTCCACTTGCAGTGGACAAAGACACACTTCCTGGTGTTTTTCAT 479 Query 509 TGTGGATTTCATTCCAAGAAATCGTATGGAGCAACTTCTTACCTGATCCTTCATCGTGAG 568 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 480 TGTGGATTTCATTCCAAGAAATCCTACGGAGCAACTTCCTACCTGATCCTTCATCGTGAG 539 Query 569 GGAAATATACTTGTTGATAGTCCTAGGTACGTGGAGAAACTTGCTGGAAAGATCGAGATG 628 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 540 GGAAATATACTTGTTGATAGTCCTAGGTACGTGGAGAAACTTGCTCGAAAGATTGAGATG 599 Query 629 AAGGGTGGTGTTCGCTACATGTTTTTGACACACAGGGATGATGTTGCAGATCACAAGAAA 688 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATGGGTGGTGTTCGCTACATCTTTTTGACACACAGGGATGATGTTGCAGATCACAAGAAA 659 Query 689 TGGGCAGA-CAGATTCAAGTCTACCAGAATTCTGCATTCTGATGATGTTGAACCTTCGAC 747 |||||||| | ||||||||||||| ||||||||||||| ||| ||||||||||||||||| Sbjct 660 TGGGCAGATC-GATTCAAGTCTACTAGAATTCTGCATTTTGAAGATGTTGAACCTTCGAC 718 Query 748 CTCTGATGTGGAGTTAAAGCTGGAAGGAAGTGGACCATGGAGTATCTATGAAGATGTCGA 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CTCTGATGTGGAGTTAAAGCTGGAAGGAAGTGGACCATGGAGTATCTATGAAGATGTCGA 778 Query 808 ACTTATACACACTCCTGGTCATTCAGAAGGATCAGTGTGCATGTTCCATAAGTCCCTCAA 867 |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 779 GCTTATACACACTCCCGGTCATTCAGAAGGATCAGTGTGCCTGTTCCATAAGTCTCTCAA 838 Query 868 GGCATTATTCACTGGCGACCATGTAATAATGACCGAATCTGGATTGAGCATTTTAGAGCA 927 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GGCATTATTCACTGGAGACCATGTAATAATGACCGAATCTGGATTGAGCATTTTAGAGCA 898 Query 928 GTACAATCACGGTTCAGTGCCTCTCCAGCTCGAGAACGTAGAAAAATTGATCAACCTGGA 987 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 GTATAATCACGGGTCAGTGCCTCTCCAGCTCGAGAACGTAGAAAAATTGATCAACCTGGA 958 Query 988 TTTCAATTGGCTAATACCGGGACATGGAAGAAGAGTACATTTCAAAGATGGAGACGAGAA 1047 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 959 TTTCAATTGGCTAATACCGGGACATGGAAGAAGAGTACATTTCAAAGATGGAGAAGAGAA 1018 Query 1048 GGCGAAGAATCTGGAAGCACTTGTTCAGAAGCACAGAGAGAAACAACTTGTTTCCTTTAG 1107 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1019 GGCGAAGAATCTGGAAGCACTTGTTCAGAAGCACAGAGAGAAACAACTTGTTTACTTTAG 1078 Query 1108 CAAATCCGGGAAAGCTTAAGAT-A-----T--GTATGCTGATTCTAAACCGGTTAATCAA 1159 ||||||||||||||||||||| | | |||||||||||||| |||||| || ||| Sbjct 1079 CAAATCCGGGAAAGCTTAAGAAGACAAACTTTGTATGCTGATTCTAGACCGGTGAACCAA 1138 Query 1160 ACTAAACCA---GACCGAATGTCTCTACGGCCTGACTGGTCTATGTGTCAGTTAGTTCCC 1216 ||||||||| ||| |||||||||| ||| |||||| || | ||||||||||||||||| Sbjct 1139 ACTAAACCACCAGACTGAATGTCTCTTCGGTCTGACTTGTTTGTGTGTCAGTTAGTTCCC 1198 Query 1217 ACGCGAGTGATGTATTT 1233 ||| ||||||||||||| Sbjct 1199 ACGTGAGTGATGTATTT 1215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52640718590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5