BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33640.1 Length=583 Score E Sequences producing significant alignments: (Bits) Value Ahg491316 jgi|Araly1|491316|fgenesh2_kg.7__749__AT4G33640.1 712 0.0 > Ahg491316 jgi|Araly1|491316|fgenesh2_kg.7__749__AT4G33640.1 Length=554 Score = 712 bits (385), Expect = 0.0 Identities = 509/564 (90%), Gaps = 27/564 (5%) Strand=Plus/Plus Query 37 CAGAAAGAGTCTCTTCTTC--AATCCAATCTTTTTACA-ACATTAGGCTGTTGAGACCTG 93 ||||||||||||||||||| ||||||||| || |||| |||| |||||||||||||| Sbjct 1 CAGAAAGAGTCTCTTCTTCAGAATCCAATC-TTATACATTGATTACGCTGTTGAGACCTG 59 Query 94 AAATCTCT-------aag--gaagaagaaagaatgaacgtagacgaagagattcagaaac 144 || ||||| ||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 60 AATTCTCTGAGGAGGAAGAAGAAGAAGAAAGAATGAACGTAGAAGAAGAGATTCAGAAAC 119 Query 145 tggaagaagagaTCCATCGTCTTGGTTCTCGTC-AGACCGATGGCTCTTACAAGGTGACG 203 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 120 TGGAAGAAGAGATCCATCGTCTTGGTTCTC-TCCAGACCGATGGCTCTTACAAGGTGACG 178 Query 204 TTTGGAGTGTTGTTCAATGACGATCGATGTGCCAACATCTTTGAAGCATTGGTTGGGACT 263 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TTTGGAGTCTTGTTCAATGACGATCGATGTGCCAACATCTTTGAAGCATTGGTTGGGACT 238 Query 264 CTGAGAGCTGCCAAGAAACGCAAAATAGTCGCATTTGAAGGTGAACTTTTGCTTCAAGGC 323 |||||||| |||||||||||||||||||| ||||| |||||||||| |||||||||||| Sbjct 239 CTGAGAGCCGCCAAGAAACGCAAAATAGTTGCATTCCAAGGTGAACTCTTGCTTCAAGGC 298 Query 324 GTTCACGATAAGGTTGAGATCACTCTCCGACCAACACCACCGCCACCGCAAGCTGCTGCT 383 |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 299 GTTCACGACAAGGTTGAGATCACTCTCCGACCACCACCACCGCCACCCCAAGCTGCTGCT 358 Query 384 GCTACTGCAGCCTCCTCCTAAGTTCCCATTTCTGCTTTTAA-TCTTTATACTATTGAGTG 442 | | | || | |||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 359 G-T-C-GC--C-TCCTCCTAAGTTCCCATTTCTGCTTTAAAATCTTTATACTATTGAGTG 412 Query 443 TAATGAAATGATAAACTTGAAGATCAATGATTCCTTTGCTTCTCTATTGTCATGATCACA 502 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 413 TAATGAAATGATAAACTTGAAAATCAATGATTCCTTTGCTTCTCTATTGGCATGATCACA 472 Query 503 TTGCTTGAGCTATATTT-T-TAAGTTGTTGCATGTAGTAACAAAGTCACTATTAACAAGA 560 | |||| |||||| ||| | | | ||||| ||||||||||| ||| || |||||||||| Sbjct 473 TCGCTTAAGCTATTTTTCTGTTATTTGTTACATGTAGTAACCAAGAGAC-ATTAACAAGA 531 Query 561 AAG-ATTTCTTCTCTTTTTCTGCC 583 | | |||||||||||| ||||||| Sbjct 532 A-GTATTTCTTCTCTTCTTCTGCC 554 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21328974251 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5