BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33640.1

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491316 jgi|Araly1|491316|fgenesh2_kg.7__749__AT4G33640.1          712    0.0  


> Ahg491316 jgi|Araly1|491316|fgenesh2_kg.7__749__AT4G33640.1
Length=554

 Score =  712 bits (385),  Expect = 0.0
 Identities = 509/564 (90%), Gaps = 27/564 (5%)
 Strand=Plus/Plus

Query  37   CAGAAAGAGTCTCTTCTTC--AATCCAATCTTTTTACA-ACATTAGGCTGTTGAGACCTG  93
            |||||||||||||||||||  ||||||||| || ||||   |||| ||||||||||||||
Sbjct  1    CAGAAAGAGTCTCTTCTTCAGAATCCAATC-TTATACATTGATTACGCTGTTGAGACCTG  59

Query  94   AAATCTCT-------aag--gaagaagaaagaatgaacgtagacgaagagattcagaaac  144
            || |||||       |||  ||||||||||||||||||||||| ||||||||||||||||
Sbjct  60   AATTCTCTGAGGAGGAAGAAGAAGAAGAAAGAATGAACGTAGAAGAAGAGATTCAGAAAC  119

Query  145  tggaagaagagaTCCATCGTCTTGGTTCTCGTC-AGACCGATGGCTCTTACAAGGTGACG  203
            |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  120  TGGAAGAAGAGATCCATCGTCTTGGTTCTC-TCCAGACCGATGGCTCTTACAAGGTGACG  178

Query  204  TTTGGAGTGTTGTTCAATGACGATCGATGTGCCAACATCTTTGAAGCATTGGTTGGGACT  263
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  TTTGGAGTCTTGTTCAATGACGATCGATGTGCCAACATCTTTGAAGCATTGGTTGGGACT  238

Query  264  CTGAGAGCTGCCAAGAAACGCAAAATAGTCGCATTTGAAGGTGAACTTTTGCTTCAAGGC  323
            |||||||| |||||||||||||||||||| |||||  |||||||||| ||||||||||||
Sbjct  239  CTGAGAGCCGCCAAGAAACGCAAAATAGTTGCATTCCAAGGTGAACTCTTGCTTCAAGGC  298

Query  324  GTTCACGATAAGGTTGAGATCACTCTCCGACCAACACCACCGCCACCGCAAGCTGCTGCT  383
            |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct  299  GTTCACGACAAGGTTGAGATCACTCTCCGACCACCACCACCGCCACCCCAAGCTGCTGCT  358

Query  384  GCTACTGCAGCCTCCTCCTAAGTTCCCATTTCTGCTTTTAA-TCTTTATACTATTGAGTG  442
            | | | ||  | |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  359  G-T-C-GC--C-TCCTCCTAAGTTCCCATTTCTGCTTTAAAATCTTTATACTATTGAGTG  412

Query  443  TAATGAAATGATAAACTTGAAGATCAATGATTCCTTTGCTTCTCTATTGTCATGATCACA  502
            ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct  413  TAATGAAATGATAAACTTGAAAATCAATGATTCCTTTGCTTCTCTATTGGCATGATCACA  472

Query  503  TTGCTTGAGCTATATTT-T-TAAGTTGTTGCATGTAGTAACAAAGTCACTATTAACAAGA  560
            | |||| |||||| ||| | | | ||||| ||||||||||| |||  || ||||||||||
Sbjct  473  TCGCTTAAGCTATTTTTCTGTTATTTGTTACATGTAGTAACCAAGAGAC-ATTAACAAGA  531

Query  561  AAG-ATTTCTTCTCTTTTTCTGCC  583
            | | |||||||||||| |||||||
Sbjct  532  A-GTATTTCTTCTCTTCTTCTGCC  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21328974251


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5