BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33660.1 Length=544 Score E Sequences producing significant alignments: (Bits) Value Ahg491314 jgi|Araly1|491314|fgenesh2_kg.7__747__AT4G33660.1 418 2e-116 > Ahg491314 jgi|Araly1|491314|fgenesh2_kg.7__747__AT4G33660.1 Length=446 Score = 418 bits (226), Expect = 2e-116 Identities = 277/300 (92%), Gaps = 10/300 (3%) Strand=Plus/Plus Query 71 TTTCTATTCAAAAACTTTAGTTTTGAGt-tttttttttCTTG--TATACTTCTC--CCCA 125 |||||||||||||||| |||| |||| | ||||||||| ||| || | ||||| ||| Sbjct 31 TTTCTATTCAAAAACTATAGTGTTGAATCTTTTTTTTT-TTGCTTA-AATTCTCTGGCCA 88 Query 126 AAATATGAGCGATCCCAAGTATGCATATCCTTACCCGGCACCGGGAAATTACCCGCAAGG 185 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 AAATATGAGCGATCCGAAGTATGCATATCCTTACCCGGCACCGGGAAATTACCCGCAAGG 148 Query 186 TCCGCCACCGCCGGTGGGAGTACCGCCACAGTATTAtcctccaccaccgccaccgcctcc 245 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 149 TCCGCCACCGCCGGTGGGAGTACCGCCACAGTATTACCCTCCACCACCGCCACCGCCGCC 208 Query 246 tcctccaccaccaccacGAAAAGTTGGTTTTCTTGAAGGACTATTAGCAGCTCTGTGTTG 305 ||| ||||||| | | ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 209 TCCACCACCAC-AGC--GAAAAGTTGGTTTTCTTGAAGGACTATTAGCGGCTCTGTGTTG 265 Query 306 TTGCTGCTTGGTGGATGAATGTTGCTGTGACCCGACCATTATATGCTTTGATTAAGTTTT 365 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 266 TTGCTGCTTGGTGGATGAATGTTGCTGCGACCCGACCATTATATGCATTGATTAAGTTTT 325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19840906280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5