BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33790.1 Length=1706 Score E Sequences producing significant alignments: (Bits) Value Ahg888706 jgi|Araly1|888706|Al_scaffold_0007_692 2266 0.0 Ahg897209 jgi|Araly1|897209|Al_scaffold_0005_1175 732 0.0 > Ahg888706 jgi|Araly1|888706|Al_scaffold_0007_692 Length=1482 Score = 2266 bits (1227), Expect = 0.0 Identities = 1402/1487 (94%), Gaps = 10/1487 (1%) Strand=Plus/Plus Query 57 ATGTCGACAGAAATGGAGGTCGTTAGTGTTCTTAAGTACCTTGACAACAAATCCATATTG 116 ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGTCGACAGAAACGGAGGTCGTAAGTGTTCTTAAGTACCTTGACAACAAGTCCATATTG 60 Query 117 GTCGTTGGAGCTGCTGGGTTCTTAGCAAATATCTTTGTGGAGAAGATATTAAGGGTGGCA 176 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 GTCATTGGAGCTGCTGGGTTCTTAGCAAATATTTTTGTGGAGAAGATATTAAGGGTGGCA 120 Query 177 CCAAACGTGAAGAAACTCTATCTCCTTCTAAGAGCATCAAAAGGAAAATCTGCTACCCAG 236 ||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| Sbjct 121 CCAGACGTGAAGAAACTGTATCTCCTTCTACGAGCATCAAATGGAAAATCTGCTACCCAG 180 Query 237 AGGTTTAACGACGAGATTTTGAAGAAAGATTTGTTCAAGGTGCTGAAGGAGAAGTATGGT 296 |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 181 AGGTTTAACGACGAGATTTTGAGGAAAGATTTGTTCAAGGTGGTGAAGGAGAAGTATGGT 240 Query 297 CCCAATCTAAATCAACTTACATCAGAGAAAATCACTATTGTCGACGGAGACATTTGCCTT 356 ||||||||||||||||||| ||| |||||| |||||||| |||| ||||||||||||||| Sbjct 241 CCCAATCTAAATCAACTTATATCTGAGAAAGTCACTATTATCGATGGAGACATTTGCCTT 300 Query 357 GAGGATTTAGGTCTTCAAGACTTCGACTTGGCTCATGAGATGATCCACCAAGTTGATGCC 416 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 301 GAGGATTTAGGTCTTCACGACTTCGACTTGGCTCATGAGATGATTCACCAAGTTGATGCC 360 Query 417 ATTGTTAATTTAGCTGCAACTACTAAGTTTGATGAAAGATACGATGTAGCTCTTGGGATC 476 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 ATTGTTAATTTAGCTGCAACTACGAAGTTTGATGAAAGATACGATGTAGCTCTTGGGATC 420 Query 477 AACACATTGGGTGCTCTCAATGTCTTGAACTTTGCCAAGAGATGTGCAAAGGTTAAGATC 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AACACATTGGGTGCTCTCAATGTCTTGAACTTTGCCAAGAGATGTGCAAAGGTTAAGATC 480 Query 537 CTTGTTCATGTATCAACAGCTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTTGTTCATGTATCAACAGCTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACA 540 Query 597 CCGTACCGTATGGGTGAGACGTTGAATGGAACCACCGGTTTAGACATCAA-CTACGAGAA 655 ||||||||||||||||||||||||||||||||||||||| |||| ||||| | | ||||| Sbjct 541 CCGTACCGTATGGGTGAGACGTTGAATGGAACCACCGGTCTAGATATCAATC-ATGAGAA 599 Query 656 AAAATTGGTTCAGGAGAAACTTGACCAGCTCCGAGTAA-TCGGAGCCGCTCCTGAAACCA 714 ||||| |||||||||||||||||||||||||||| | | |||||| ||||||||||| Sbjct 600 GAAATTCGTTCAGGAGAAACTTGACCAGCTCCGAGCCAGT-GGAGCCTCTCCTGAAACCG 658 Query 715 TCACGGAAACCATGAAGGATCTCGGACTCAG-ACGGGCAAAGATGTACGGATGGCCAAAC 773 |||| || |||||||||||||||||||||| | |||||||| ||||||||||||||||| Sbjct 659 TCACACAAGCCATGAAGGATCTCGGACTCAGGA-GGGCAAAGGTGTACGGATGGCCAAAC 717 Query 774 ACATATGTGTTCACCAAAGCAATGGGGGAGATGATGGTAGGGACAAAAAGAGAAAATCTG 833 ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct 718 ACATATGTGTTCACCAAGGCAATGGGGGAGATGATGGTTGGGACAAAAAGGGAAAATCTA 777 Query 834 TCACTTGTGTTGCTTCGTCCTTCAATTATTACCAGCACATTCAAAGAACCATTTCCTGGT 893 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 778 TCACTTGTGTTGCTTCGTCCTTCAATTATTACCAGCACATTCAAAGAACCATTCCCTGGT 837 Query 894 TGGACTGAGGGCATCAGGACTATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTC 953 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 838 TGGACTGAGGGCATCAGGACCATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTC 897 Query 954 ACGTGCTTCCTCTGTGATCTTGATGCTGTTTCTGATGTGATGCCGGCAGATATGGTAGTA 1013 |||||||| || ||||||||| ||||| |||| |||||| |||| || |||||||||||| Sbjct 898 ACGTGCTTTCTTTGTGATCTTAATGCTATTTCCGATGTGCTGCCTGCGGATATGGTAGTA 957 Query 1014 AATTCGATTCTTGTATCAATGGCCGCTCAAGCCGGTAAACAAGAAGAGATTATTTACCAT 1073 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AATTCGATTCTAGTATCAATGGCCGCTCAAGCCGGTAAACAAGAAGAGATTATTTACCAT 1017 Query 1074 GTGGGTTCTTCACTTAGAAATCCGATGAAAAATTCAAAGTTTCCTGAATTAGCGTATCGG 1133 ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1018 GTGGGTTCTTCACTTAGGAATCCGATGAAAAATGAAAAATTTCCTGAATTAGCGTATCGG 1077 Query 1134 TATTTCTCAATCAAACCGTGGACCAACAAAGAAGGGAAGGTCGTTAAGGTCGGGGCCATT 1193 |||||| ||| ||| ||||||| |||||||||||| ||||||||| ||||||| |||| Sbjct 1078 TATTTCACAACCAACCCGTGGATCAACAAAGAAGGCAAGGTCGTTCGGGTCGGGAACATT 1137 Query 1194 GAGATCCTGAGTTCTATGCGTAGTTTCCATAGATACATGACCATACGCTACTTGATTGCA 1253 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 1138 GAGATTCTGAGTTCTATGCGTAGTTTCCATAGATACATGACCATACGTTACTTGATTTCA 1197 Query 1254 TTGAAGGGACTTGAATTGGTAAACATAATACTTTGCAAGTTGTTTGAGAAGGAATTTCAG 1313 |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || Sbjct 1198 TTGAAGGGACTTGAATTGGTAAACATGGTACTTTGCAAGTTGTTGGAGAAGGAATTTAAG 1257 Query 1314 TATTTCAATAAGAAAA-TAAATTTTATATTCCGGCTTGTTGATCTCTATCAGCCTTACCT 1372 || ||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 1258 TACTTCCATA-GAAAAATAAATTTTATATACCGGCTTGTTGATCTCTATCAGCCTTACCT 1316 Query 1373 CTTTTTCTATGGAATATTTGATGATTCAAACACAGAAAAATTGCGAAAA-ATGGTATCGA 1431 ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| Sbjct 1317 CTTTTTCTATGGAATATTTGATGATACAAACACAGAAAAATTGC-AAAATATGGTATCGA 1375 Query 1432 AGACGGGAGTCGAAAACGAGATGTTTTATTTCGATCCAAAGGTTCTCGATTGGGACGACT 1491 ||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1376 AGACGGGAGTCGAAAGCGAGATGTTCTATTTCGATCCAAAGGTTATCGATTGGGACGACT 1435 Query 1492 ATTTTTTGAACACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAA 1538 |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1436 ATTTTTTGAATACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAA 1482 > Ahg897209 jgi|Araly1|897209|Al_scaffold_0005_1175 Length=1341 Score = 732 bits (396), Expect = 0.0 Identities = 804/1000 (80%), Gaps = 32/1000 (3%) Strand=Plus/Plus Query 556 CTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACACCGTACCGTATGGGTGAGA 615 ||||||| || || |||||||| || |||||||||||||| || |||| ||||||||||| Sbjct 356 CTTACGTATGTGGTGAAAAATCGGGATTGATAATGGAAACGCCATACCATATGGGTGAGA 415 Query 616 CGTTGAATGGAACCACCGGTTTAGACATCAACT-ACGAGAAAAAATTGGTTCAGGAGAAA 674 |||| || ||| | ||| |||| ||||| | | ||| | || |||||| |||||||| Sbjct 416 CGTTAAACGGAGTAATAGGTCTAGATATCAA-TCAAGAGCAGAAGTTGGTTAAGGAGAAA 474 Query 675 CTTGA-CCAGCTCCGAGTAATCGGAGCCGCT-CCTGAAACCATCACGGAAACCATGAAGG 732 ||| | | |||| | || || ||||| | | || || |||||||| || ||||||||| Sbjct 475 CTT-AGCAAGCTTCAAGCAACCGGAG-CTTTGCCCGAGACCATCACACAAGCCATGAAGG 532 Query 733 ATCTCGGACTCAGACGGGCAAAGATGTACGGATGGCCAAACACATATGTGTTCACCAAAG 792 || | ||||| ||| ||||||||||||||||||||||||||||||| ||||| || || | Sbjct 533 ATTTTGGACTTAGAAGGGCAAAGATGTACGGATGGCCAAACACATACGTGTTTACGAAGG 592 Query 793 CAATGGGGGAGATGATGGTAGGGACAAAAAGAGAAAATCTGTCACTTGTGTTGCTTCGTC 852 |||||||||| ||||| |||||| |||||| || ||| |||| | ||| | |||||| Sbjct 593 CAATGGGGGAAATGATAGTAGGGGTAAAAAGGGAGAATATGTCGGTAGTGATAATTCGTC 652 Query 853 CTTCAATTATTACCAGCACATTCAAAGAACCATTTCCTGGTTGGACTGAGGGCATCAGGA 912 ||||||||||||||||||| |||||||||||||| || || ||||| ||||||||||||| Sbjct 653 CTTCAATTATTACCAGCACCTTCAAAGAACCATTCCCCGGCTGGACCGAGGGCATCAGGA 712 Query 913 CTATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTCACGTGCTTCCTCTG-TGAT 971 | ||||||||| ||||||||||||| || | |||||| ||||| |||||||| || |||| Sbjct 713 CAATTGATAGTCTAGCTGTTGGATACGGTACAGGCAAGCTCACATGCTTCCT-TGGTGAT 771 Query 972 CTTGATGCTGTTTCTGATGTGATGCCGGCAGATATGGTAGTAAATTCGATTCTTGTATCA 1031 ||| | ||| || |||||||| || ||||||||||| || ||| | || || || ||| Sbjct 772 CTTAACGCTACATCGGATGTGATACCTGCAGATATGGTTGTTAATACAATGCTAGTGTCA 831 Query 1032 ATGGCCGCTCAAGCCGGTAAACAAGAA-GAGATTATTTACCATGTGGGTTCTTCACTTAG 1090 ||||| ||||| || ||| ||| ||| ||||| ||||| ||||||||||||||| | | Sbjct 832 ATGGCTGCTCACGCTGGTGGACA-GAAAGAGATGATTTATCATGTGGGTTCTTCAATGAA 890 Query 1091 AAATCCGATG-AAAAATTC-AAAGTTTCCTGAATTAGCGTATCGGTATTTCTCAATC-AA 1147 |||||| || |||||| ||| | || ||| |||| || ||||||||| ||| | || Sbjct 891 AAATCC-ATTCAAAAATGAGAAAATG-CCGGAAATAGCATACCGGTATTTCACAA-CGAA 947 Query 1148 ACCGTGGACCAACAAAGAAGGGAAGGTCGTTAAGGTCGGGGC-CATTGA-GATCCTGAGT 1205 ||| ||||||||||||||||||||||| ||| ||||||| | |||| | | ||||| Sbjct 948 ACCATGGACCAACAAAGAAGGGAAGGTGGTTCGGGTCGGGAAAC-TTGATGTTT-TGAGT 1005 Query 1206 TCTATGCGTAGTTTCCATAGATACATGACCATACGCTACT-TGA-TTGCATTGAAGGGAC 1263 ||||||| |||||||||||||||||||||||| | || | | | || | |||||||||| Sbjct 1006 TCTATGCCTAGTTTCCATAGATACATGACCATTCATTA-TAT-ACTTCCTTTGAAGGGAC 1063 Query 1264 TTGAATTGGTAAACATAATACTTTGCAAGTTGTTTGAGAAGGAATTTCAGT-ATTTCAAT 1322 |||| || | ||||| ||||||| |||| ||| |||||| |||| || || ||| | Sbjct 1064 TTGAGTTACTGAACATGGTACTTTGTAAGTCGTTAGAGAAGAAATTG-AGGGATCTCAGT 1122 Query 1323 AAGAAAATAAATTTTATATTCCGGCTTGTTGATCTCTATCAGCCTTACCTCTTTTTCTAT 1382 ||||| ||||||||| |||| |||||||| ||||| ||||| |||||||||||||||||| Sbjct 1123 AAGAAGATAAATTTTGTATTGCGGCTTGTCGATCTTTATCAACCTTACCTCTTTTTCTAT 1182 Query 1383 GGAATATTTGATGATTCAAACACAGAAAAATTGCGAAAAA-TGGTATC-GAAGACGGGAG 1440 |||||||| |||||| |||| || |||||| ||| ||||| | | | || ||| |||| Sbjct 1183 GGAATATTCGATGATACAAATACGGAAAAACTGC-AAAAACTATTGCCAGA-GACAGGAG 1240 Query 1441 TCGAAAACGAGATGTTT-TATTTCGATCCAAAGGTTCTCGATTGGGACGACTATTTTTTG 1499 | || | | | || ||| ||||| ||||| ||| || || ||||||||||||||||| || Sbjct 1241 TGGAGACCAAAAT-TTTCTATTTTGATCCGAAGATTATCAATTGGGACGACTATTTTGTG 1299 Query 1500 AACACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAAT 1539 | |||||| || ||||||| |||||||||||||| ||| Sbjct 1300 TATACACATATTCCTGGGCTGGTTAAGTATGTCTTCAAAT 1339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63991611600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5