BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33905.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491288 jgi|Araly1|491288|fgenesh2_kg.7__721__AT4G33905.1 1629 0.0
Ahg480374 jgi|Araly1|480374|fgenesh2_kg.3__3075__AT2G14860.1 496 2e-139
> Ahg491288 jgi|Araly1|491288|fgenesh2_kg.7__721__AT4G33905.1
Length=1051
Score = 1629 bits (882), Expect = 0.0
Identities = 1000/1057 (95%), Gaps = 7/1057 (1%)
Strand=Plus/Plus
Query 1 CTCGGAGCCATCACACGACAATGACCGGCGCATTGTTTAGAAACGCTGCTTCCGACGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 CTCGGAGCCATCACACGACAATGACCGGCGCATTGTTTAGAAACGCTGCCTCCGAAGCCG 60
Query 61 CTCGGATCTTTCGATTACAGCGAGCAACGATGACGAATCCTTTTGGAAAGCTCGACCCTT 120
|||||||||| || ||| ||| | | ||| | |||||||||| ||||||||||||||||
Sbjct 61 CTCGGATCTTCCGGTTAAAGCTAACTGCGACGGCGAATCCTTTCGGAAAGCTCGACCCTT 120
Query 121 TACCGATAGGAGGAAACATCCAGCGATTGCAGTCGAGGCCTTTTTATCGTACGCCTCAGT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCGATAGGAGGAAACATCCGGCGATTGCAGTCGAGGCCTTTTTATCGTACGCCTCAGT 180
Query 181 TTCTCGGGAAAGCAAAGGAAACAGGTGTCTCTGGTTTCTGTTCGTCTTCGTCTTCGTCTT 240
|||||||||||||||||||||| || ||||||||||||||| | | | | | | ||||||
Sbjct 181 TTCTCGGGAAAGCAAAGGAAACCGGAGTCTCTGGTTTCTGTAC-T-T-C-T-T-CGTCTT 234
Query 241 CTTCGACGGTCTCTACAGCAGGATTCATCGGATGGTATTTGGGAATGGTGAAATCTCGGC 300
|||||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 235 CTTCGACGGTCTCTACTGCAGGATTCATCAGTTGGTATTTGGGAATGGTGAAATCGCGGC 294
Query 301 CGGTTCTTACCAAATCCGTCACGTCCTCGCTTATTTACATAGCAGCCGATTTGTCTTCGC 360
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 295 CGGTTCTGACCAAATCCGTCACGTCCTCGCTTATTTACATAGCCGCCGACTTGTCTTCGC 354
Query 361 AGACAATTCCACAAGCTTCAGTGGATTCTTATGACTTGGTAAGAACAGCAAGGATGGGAG 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 355 AGACAATTCCACAAGCTTCAGTGGAGTCTTATGACTTGGTAAGAACAGCAAGGATGGCAG 414
Query 421 GATATGGGTTATTAATCTTGGGTCCTACACTTCACTATTGGTTCAATCTCATGTCAAGTC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 GATATGGGTTATTAATCTTGGGTCCTACACTTCACTATTGGTTCAATCTCATGTCAAGAC 474
Query 481 TCTTCCCAAAACGAGATTTGATCACAACGTTTAAGAAAATGGCCATGGGACAGACAGTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 475 TCTTCCCAAAACGAGATTTGATCACAACGTTTAAGAAAATGGCCATGGGACAGACCGTCT 534
Query 541 ATGGGCCTGCCATGAATGTTGTTTTCTTCTCACTGAATGCAGCCCTACAGGGTGAAAATG 600
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 535 ACGGGCCTGCCATGAATGTTGTTTTCTTCTCACTGAATGCAGCCTTACAGGGTGAAAACG 594
Query 601 GTTCAGAGATAGTTGCTAGATTGAAAAGGGACCTACTTCCCACAATGCTTAATGGTGTCA 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 595 GTTCAGAGATAGTTGCTAGATTGAAAAGGGACCTACTTCCCACAATGCTAAATGGTGTCA 654
Query 661 TGTATTGGCCTTTGTGTGATTTTATTACTTTCAAGTTCTGCCCTGTTTATTTACAGCCAC 720
|||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||
Sbjct 655 TGTATTGGCCTTTGTGTGATTTTATTACATTCAAGTTCTTCCCAGTTCATTTACAGCCAC 714
Query 721 TTGTGAGCAACTCGTTTTCGTATCTATGGACAATCTACATAACTTATATGGCAAGCCGTG 780
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 TTGTGAGCAACTCGTTTTCATATTTATGGACAATCTACATAACTTATATGGCAAGCCGTG 774
Query 781 CGACGCCAACCGCCATTGAAATTTGAAAAAGCTCTCTGGGAAACTCTCTCAGTTTAGAAA 840
||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 775 CGAAGCCAACAGCCATTGCAATTTGAAAAAGCTCTCTGGGAAACTCTCTCAGTTTAAAAA 834
Query 841 TGAAGAAATGAAGCCAAAAAACACTTTTACTAAAA-GAAACAGGGCATTCTTCAACATTC 899
||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct 835 TGAAGAAATGAAGCCAAAAAAAACTTTTACTAAAAAGAAACAGAGCATTCTTCAACATTC 894
Query 900 TTTGTTTCCTCTCTCCAGATTTTAGGAGGATATAATGTAAGGAGTTTTGGGGAAAACTGT 959
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 895 TTTGTTTCCTCTCTCCAGATTTTAGGAGGATATAATGTAAAGAGTTTTGGGAAAAACTGT 954
Query 960 GCATTTGGACATGTCTTACACTCTTAGATTTAATTCAATTCTATGTTTAGTATTCCATGT 1019
||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |
Sbjct 955 GCATTTGGACATGTCTTACACTCTTAGATTTAATTGACTTCTATGTTTAGTATTACATAT 1014
Query 1020 AATATTTGAGTAAAATGGTGGTTCTTTAGCTTCGATC 1056
||||||||||||||||||||||||||||||||| |||
Sbjct 1015 AATATTTGAGTAAAATGGTGGTTCTTTAGCTTCTATC 1051
> Ahg480374 jgi|Araly1|480374|fgenesh2_kg.3__3075__AT2G14860.1
Length=977
Score = 496 bits (268), Expect = 2e-139
Identities = 437/518 (84%), Gaps = 14/518 (3%)
Strand=Plus/Plus
Query 270 GGATGGTAT-TTGGGAATGGTGAAATCTCGGCCGGTTCTTACCAAATCCGTCACGTCCTC 328
||||||||| || || ||||| ||||| || || ||| | |||||| |||| | |||
Sbjct 279 GGATGGTATCTT-GGTATGGTTAAATCACGCCCAGTTGTGACCAAAAGTATCACTTGCTC 337
Query 329 GCTTATTTACATAGCAGCCGATTTGTCTTCGCAGACAA-TTCCACAAGCTT-CAGTGGAT 386
||||||||||| || ||||| |||||||| ||||||| ||| | || ||| | | ||
Sbjct 338 TCTTATTTACATTGCCGCCGACTTGTCTTCTCAGACAATTTCGA-AAACTTCCTCT-GAG 395
Query 387 TCTTATGACTTGGTAAGAACAGCAAGGATGGGAGGATATGGGTTATTAATCTTGGGTCCT 446
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 396 TCATATGACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCA 455
Query 447 ACACTTCACTATTGGTTCAATCTCATGTCAAGTCTCTTCCCAAAACGAGATTTGATCACA 506
||||||||||||||||||||| |||||||||| ||||| || |||| |||||||||||||
Sbjct 456 ACACTTCACTATTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACA 515
Query 507 ACGTTTAAGAAAATGGCCATGGGACAGAC-AGTCTATGGGCCTGCCATGAATGTTGTTTT 565
||||||||||||||||| ||||||||| | | |||| |||||| |||||| ||| ||||
Sbjct 516 ACGTTTAAGAAAATGGCTATGGGACAGGCGA-TCTACGGGCCTACCATGACCGTTATTTT 574
Query 566 CTTCTCACTGAATGCAGCCCTACA-GGGTGAAAATGGTTCAGAGATAGTTGCTAGATTGA 624
||||||| | || ||| ||||||| ||| |||| |||||||| ||| |||| |||||||
Sbjct 575 CTTCTCATTAAACGCATCCCTACAAGGG-GAAAGCGGTTCAGATATACTTGCCAGATTGA 633
Query 625 AAAGGGACCTACTTCCCA-CAATGCTTAATGGTGTCATGTATTGGCCTTTGTGTGATTTT 683
|||||||| |||| ||| | ||| |||| |||||||||||||||||| | |||||||||
Sbjct 634 AAAGGGACTTACT-CCCTGCGATGTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTT 692
Query 684 ATTACTTTCA-AGTTCTGCCCTGTTTATTTACAGCCACTTGTGAGCAACTCGTTTTCGTA 742
|| || |||| | |||| ||||||| |||||||||| ||||| |||||||||||||||||
Sbjct 693 ATAACATTCAGA-TTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCGTTTTCGTA 751
Query 743 TCTATGGACAATCTACATAACTTATATGGCAAGCCGTG 780
| |||||||||||||||| ||||| ||||||| |||||
Sbjct 752 TGTATGGACAATCTACATGACTTACATGGCAAACCGTG 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5