BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33980.2 Length=989 Score E Sequences producing significant alignments: (Bits) Value Ahg491275 jgi|Araly1|491275|fgenesh2_kg.7__708__AT4G33980.1 952 0.0 > Ahg491275 jgi|Araly1|491275|fgenesh2_kg.7__708__AT4G33980.1 Length=898 Score = 952 bits (515), Expect = 0.0 Identities = 620/671 (92%), Gaps = 6/671 (1%) Strand=Plus/Plus Query 96 AGAGGAGGAGAAGCAACGATGGAGAATGATTGCACGGTGAATATTGTCTCTCTGGAGAAG 155 ||| |||||| ||| ||||||||||||||| ||||||||||||||| |||||||||| | Sbjct 15 AGA-GAGGAGCCGCAGCGATGGAGAATGATTACACGGTGAATATTGTTTCTCTGGAGATG 73 Query 156 GATCGCGATGTTTCGGAGGCGTCGGCTGAATCTCAGAGCGAGTCGACTCTTTCGAACTCG 215 ||||| |||||| | ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 74 GATCGTGATGTTGCCGAGTCGTCGGCTGAATCTCAGAGCGAGTCGACTCTATCGAACTCG 133 Query 216 CTCGATTCCGGTGTTACGGCTGAGACCTCTCGTTCTGATGCTGATTCCAAACTGGATGAA 275 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 134 CTCGAGTCCGGTGTTACGGCTGAGACCTCTCGTGCTGATGCTGATTCCAAACTGGATGAG 193 Query 276 TGTACTGCTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 335 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 194 TGTGCTGGTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 253 Query 336 GTTAGGCAATTATACTCCTTGCTTGGAGGTGGGACTCAGAGACTTTCTAGAACTCGTGAT 395 |||||||| || || ||||| |||||||| | |||||| |||||||||||||| |||||| Sbjct 254 GTTAGGCAGTTGTATTCCTTCCTTGGAGGAGAGACTCAAAGACTTTCTAGAACCCGTGAT 313 Query 396 GTGCAGTCTAACTCTCATAAATCAG-CTGATCAGTTTACCGTCCTACAAAATGGTTGCTG 454 ||||||||||| ||||| ||||| | ||||||||||||| |||||||||||||| ||||| Sbjct 314 GTGCAGTCTAAGTCTCACAAATC-GACTGATCAGTTTACGGTCCTACAAAATGGCTGCTG 372 Query 455 GCAGAAGGTTAACTTTGGAAAGAAACAATCTTGTTTGGAGACTTCATCTGAGTTTCGTTT 514 |||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||| Sbjct 373 GCAGAATGTTAACTTTGGAAAGAAACAAGCTCATTTGGAGACTTCATCTGAATTTCGTTT 432 Query 515 TCACAGAAATTCATTGAGAAATAAGCCTGAAAATTCCAACGGAAATTACACCATGGGAAC 574 ||| | ||| |||||||||| ||| ||||||||| |||| |||||||||||| ||||||| Sbjct 433 TCAGAAAAAATCATTGAGAAGTAAACCTGAAAATCCCAAGGGAAATTACACCGTGGGAAC 492 Query 575 TACTGTCCAAGGAGATGTGTTATGTCATGACGAAACCAAACACTCAGAGGCGTCAGGGCA 634 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 493 TGCTGTCCAAGGAGATGTGTTATGTCATGAAGAAACCAAACACTCAGAGGCGTCAGGGCA 552 Query 635 GAATTTCagagaagaagaagaagaagaagagaagggagaggtgagcaaaaaacgagaaag 694 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 553 GAATTTC--AG-AGAAGAAGAAGAAGAAGAGAAGGGAGAGGTGAGCAGAAAACGAGACAG 609 Query 695 agaagCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 AGAAGCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 669 Query 755 GAAGCCCAGAA 765 ||||||||||| Sbjct 670 GAAGCCCAGAA 680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36750491988 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5