BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34000.1 Length=1985 Score E Sequences producing significant alignments: (Bits) Value Ahg491272 jgi|Araly1|491272|fgenesh2_kg.7__705__AT4G34000.1 2529 0.0 > Ahg491272 jgi|Araly1|491272|fgenesh2_kg.7__705__AT4G34000.1 Length=1894 Score = 2529 bits (1369), Expect = 0.0 Identities = 1710/1863 (92%), Gaps = 70/1863 (4%) Strand=Plus/Plus Query 118 TTTTGGAGATTTGTTTACTGATTAAAAGGAGATTCCTTTCCATTTTCAC---CATTTGCT 174 |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct 82 TTTTGGAGATTTGTTTTTTGATT-AAAGGAGATTCCTTTCCATTTTCACTATTATTTGCT 140 Query 175 CTG-TTT-G-ACTTCATTGTGC-T-TATATTTCATTT-AGATCTTTTGTTTGGGTTTAGC 228 ||| ||| | |||||||||||| | ||||| || ||| |||||||||||| ||||||||| Sbjct 141 CTGTTTTAGTACTTCATTGTGCATATATATCTC-TTTCAGATCTTTTGTTGGGGTTTAGC 199 Query 229 TTTGGAACTGATAAAAATCTGATTTTGTCTCACGGCTTTG-GATTTGGTTCT-TAAATTT 286 ||||||||||||||||||||||||||| || | |||| | ||||||| | ||||||| Sbjct 200 TTTGGAACTGATAAAAATCTGATTTTGGGTCTC--TTTTGAGTTTTGGTTTTCTAAATTT 257 Query 287 TGGTAAATATCCAGAAGCTTGATCCTCCTAGTTGTACGAAAGCTTGAGTAATGGGGTCTA 346 |||| | | | | || | ||| | | |||||| |||||||||||||| Sbjct 258 TGGT-ACT-T-TA-AA-----A---TCC-------A-G-AAGCTT-AGTAATGGGGTCTA 295 Query 347 GATTAAACTTCAAGAGCTTTGTTGATGGTGTGAGTGAGCAGCAGCCAACGGTGGGGACTA 406 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 296 GATTAAACTTCAAGAGCTTTGTTGATGGTGTGAGT--G-AGCAGCCAACGGTGGGGACTA 352 Query 407 GTCTTCCATTGACTAGGCAGAACTCTGTGTTCTCGTTAACCTTTGATGAGTTTCAGAACT 466 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 353 GTCTTCCATTGACGAGACAGAACTCTGTGTTTTCGTTAACCTTTGATGAGTTTCAGAACT 412 Query 467 CATGGGGTGGTGGAATTGGGAAAGATTTTGGGTCTATGAACATGGATGAGCTCTTGAAGA 526 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 413 CATGGGGTGGTGGAATTGGCAAGGATTTTGGGTCTATGAACATGGATGAGCTCTTGAAGA 472 Query 527 ACATTTGGACTGCAGAGGAAAGTCATTCAATGATGGGAAACAATACCAGTTACACCAACA 586 ||||||||||||| |||||||| || ||||| ||||||||||| || |||| || ||||| Sbjct 473 ACATTTGGACTGCTGAGGAAAGCCACTCAATCATGGGAAACAACACTAGTTTCAACAACA 532 Query 587 TCAGCAATGGTAATAGTGGAAACACTGTTATTAACGGCGGTGGTAACAACATTGGTGGGT 646 ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 533 TCAACAATGGTAATAGCGGAAACACTGTTATTAACGGCGGTGGTAACAACAATGGTGGGT 592 Query 647 TAGCTGTTGGTGTGGGAGGAGAAAGTGGTGGTTTTTTCACTGGTGGGAGTTTGCAGAGAC 706 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 593 TAGCTGTTGGTGTGGGAGAAGAAACTGGTGGTTTTTTCACTGGTGGGAGTTTGCAGAGAC 652 Query 707 AAGGTTCACTTACCTTGCCTCGGACGATTAGTCAGAAAAGGGTTGATGATGTCTGGAAGG 766 |||| || |||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 653 AAGGGTCGCTTACCTTGCCTCGTACCATTAGTCAGAAGAGGGTTGATGATGTCTGGAAGG 712 Query 767 AGCTGATGAAGGAGGATGACATTGGAAATGGTGTTGTTAATGGTGGGACAAGCGGAATTC 826 |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| Sbjct 713 AGCTGATGAAGGAGGATGACATTGGAAATGGTGTTGGTAATGCTGGGACAGGCGGGATTC 772 Query 827 CGCAGAGGCAACAAACGCTGGGAGAGATGACTTTGGAGGAGTTTTTGGTCAGGGCTGGTG 886 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 773 CGCAGAGGCAACAAACGTTGGGAGAAATGACTTTGGAGGAGTTTTTGGTCAGGGCTGGTG 832 Query 887 TGGTTAGGGAAGAACCTCAACCGGTGGAGAGTGTAACTAACTTCAATGGCGGATTCTATG 946 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 833 TGGTTAGGGAAGAACCTCAACCCGTGGAGAGTGTAACTAACTTCAATGGCGGATTCTATG 892 Query 947 GATTTGGCAGTAATGGAGGTCTTGGGACAGCTAGTAATGGGTTTGTTGCAAACCAACCTC 1006 |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| Sbjct 893 GATTTGGCAGTAATGGAGGTCTTGGGACAGCTGGTAATGGGTTTGTTGCTAACCAGCCTC 952 Query 1007 AAGATTTGTCAGGAAATGGAGT-AGCGGTGAGA-CAGGATCTGCTGACTGCTCAAACTCA 1064 | |||||||| ||||||||| | || ||||||| || ||||||||||| ||||||||||| Sbjct 953 ATGATTTGTCTGGAAATGGA-TCAGTGGTGAGACCA-GATCTGCTGACAGCTCAAACTCA 1010 Query 1065 GCCACTACAGATGCAGCAGCCACAGATGGTGCAGCAGCCACAGATGGTGCAGCAGCCGCA 1124 ||||||||||||||||||| | || ||| || ||||||||||||||| Sbjct 1011 GCCACTACAGATGCAGCAG---C--------CA-CAG--AC----GGTGCAGCAGCCGCA 1052 Query 1125 ACAACTGATACAGACGCAGGAGAGGCCTTTTCCCAAACAGACCACTATAGCATTTTCCAA 1184 ||| |||||||||| ||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 1053 ACAGCTGATACAGAAGCAGGAGAGACCTTTTCCCAAACAGACCACTATCGCGTTTTCCAA 1112 Query 1185 CACTGTTGATGTGGTTAACCGTTCTCAACCTGCAACACAGTGCCAGGAAGTGAAGCCTTC 1244 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 CACTGCTGATGTAGTTAACCGTTCTCAACCTGCAACACAGTGCCAGGAAGTGAAGCCTTC 1172 Query 1245 AATACTTGGAATTCATAACCATCCTATGAACAACAATCTACTGCAAGCTGTCGATTTTAA 1304 |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1173 AATACTTGGAATTCGTAACCATCTTGTGAACAACAATCTACTGCAAGCTGTCGATTTTAA 1232 Query 1305 AACAGGAGTAACGGTTGCAGCAGTATCTCCTGGAAGCCAGATGTCACCTGATCTGACTCC 1364 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 AACAGGGGTAACGGTTGCAGCAGTATCTCCTGGAAGCCAGATGTCACCTGATCTGACTCC 1292 Query 1365 AAAGAGCGCCCTGGATGCATCTTTGTCCCCTGTTCCTTACATGTTTGGGCGAGTGAGAAA 1424 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1293 AAAGAGCGCCCTGGATGCATCTTTGTCTCCTGTTCCTTACATGTTTGGGCGAGTGAGAAA 1352 Query 1425 AACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAG 1484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 AACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAG 1412 Query 1485 GGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAGCTTATACGATGGAACTGGAAGCAGA 1544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1413 GGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAGCTTATACGATGGAACTGGAAGCAGA 1472 Query 1545 AATTGCGCAACTCAAAGAATTGAATGAAGAGTTGCAGAAGAAACAAGTTGAAATCATGGA 1604 |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| Sbjct 1473 AATTGCGCAACTCAAAGAGTTAAATGAAGAGTTGCAGAGGAAACAAGTTGAAATCATGGA 1532 Query 1605 AAAGCAGAAAAATCAGCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAG 1664 |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1533 AAAGCAGAAAAACCAGCTCCTGGAGCCACTGCGCCAGCCATGGGGAATGGGATGCAAAAG 1592 Query 1665 GCAATGCTTGCGAAGGACATTGACGGGTCCCTGGTAGAGCTTATAATGGCGTCTAAGGAA 1724 ||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||| Sbjct 1593 GCAATGCTTGCGAAGGACATTAACGGGTCCCTGGTAGAGCCTATACTGGCGTCCAAGGAA 1652 Query 1725 CCCAACAAAGCGCCGAAGTTATAGAACAACTCAGAAGATAGAAAGCTAGCTTTGTACGTA 1784 | |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| ||| Sbjct 1653 CTCAACAAAGAGCCTAAGTTATAGAACAACTCAGAAAATAGAAAGCTAGCTTGGTATGTA 1712 Query 1785 GTTTAGGCAGGT-T--CTGTGGGTGATTGTAAATCTTGAAGTGTGGCGGATTTGACAGAG 1841 |||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1713 GTTTAGGCAGGTGTTTCTGTGGGTGATTGTAAATCGTGAAGTGTGGCGGATTTGACAGAG 1772 Query 1842 ATAGATAAACACAT-ATCTGTTCTATTTTCCT-AA--ATCTTTTGGTTTTATCTTCCTGA 1897 ||| |||||||| | ||||||||||||||||| || |||||||||||||||| |||||| Sbjct 1773 ATATATAAACAC-TCATCTGTTCTATTTTCCTGAAGCATCTTTTGGTTTTATCGTCCTGA 1831 Query 1898 TGTAATGGATCTTTATCATTTGTCTTGAACATCTTTGTGACTTAACCAGAGTGAATTTAT 1957 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1832 TGTAATGGATCTTGATCATTTGTCTTGAACATCTTTGTGACTTAACCAGAGTGGATTTAT 1891 Query 1958 CTT 1960 ||| Sbjct 1892 CTT 1894 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74618789955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5