BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34020.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944513 jgi|Araly1|944513|scaffold_700742.1 2309 0.0
> Ahg944513 jgi|Araly1|944513|scaffold_700742.1
Length=1459
Score = 2309 bits (1250), Expect = 0.0
Identities = 1392/1461 (95%), Gaps = 7/1461 (0%)
Strand=Plus/Plus
Query 22 TGCTGCATTAGCTATCGTCAATGGGGTCTTTAGGATATTCGATTTCAATGATAGCTTCGC 81
|||||||||||| |||| |||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1 TGCTGCATTAGCAATCGGCAATGGGGTCCTTAGGTTTTTCGATTTCAATGATAGCTTCGT 60
Query 82 TGAGTCCAACTTTGATGGAGTCAAGGCTTATCTCTTCGATGGGTTGTGTCTCGATGACTG 141
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 61 TGAGTCCAACTTTGATGGAGTCGAGGCTTATCTCTTCGATGGGTTGTGTCTCGACGATTG 120
Query 142 TTGCTCCTAGTTTTTCTTCAGTCTCTGTAGTTTCTTCTTCACTAGGGACAACAAGGAGGG 201
||||||| ||||| |||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 121 TTGCTCCGAGTTTGTCTTCAGTCTCTGTGGTTTCTTCTTCACCAGGGACAAGAAGGAGGG 180
Query 202 ACCGAACTTTAAAGCTTAGATCTTCCATGTCTCCGGGTATGGTAACAACGCT-AGATTCC 260
|||||| ||||| ||| |||||||||||||| || |||||||||||||| | |||||||
Sbjct 181 ACCGAAATTTAAGGCTCAGATCTTCCATGTCACCAAGTATGGTAACAACG-TCAGATTCC 239
Query 261 GATGTTGGCGTCGGGTCTTCTGCAACTACTAAAAAGGTGCTTGTTCCAATTGGATATGGG 320
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATGTTGGCGTCGTGTCTTCTGCAACTACTAAAAAGGTGCTTGTTCCAATTGGATATGGT 299
Query 321 ACGGAGGAAATAGAAGCTGTTGTGTTAGTTGATGTTTTACGGCGAGCTGGTGCTGATGTT 380
|||||||||||||||||||||||||||||||||||| ||||||||||||| || || ||
Sbjct 300 ACGGAGGAAATAGAAGCTGTTGTGTTAGTTGATGTTCTACGGCGAGCTGGGGCAGAGGTC 359
Query 381 ACTGTTGCTTCTGTGGAGCAGAAGCTAGAGGTTGAAGGATCCTCAGGGACCAGATT-GCT 439
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| | |
Sbjct 360 ACTGTTGCCTCTGTGGAGCAGAAGCTAGACATTGAAGCATCCTCAGGGACCAGATTAG-T 418
Query 440 TGCTGATGTTCTTATCTCGAAATGTGCTGATCAAGTTTATGATTTAGTTGCTTTGCCGGG 499
||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||
Sbjct 419 TGCTGATGTTCTTATCTCGAAGTGTGCTGATCAGGTTTATGATCTAGTGGCTTTGCCGGG 478
Query 500 AGGCATGCCTGGTGCTGTTAGGTTAAGAGACTGTGAAATTCTCGAGAAGATCATGAAGAG 559
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 479 AGGCATGCCTGGTGCTGTTAGGTTAAGAGACTGTAAAATTCTTGAGAAGATCATGAAGAG 538
Query 560 ACAAGCTGAAGATAAGCGGTTATACGGGGCTATATCCATGGCTCCAGCTATTACTCTTCT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACAAGCTGAAGATAAGCGGTTATACGGGGCTATATCCATGGCTCCAGCTATTACTCTTCT 598
Query 620 TCCATGGGGACTTTTGACAAGAAAGAGGACAACGGGACATCCTGCTTTTTTCGGGAAGCT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCCATGGGGACTTTTGACAAGAAAGAGGACAACGGGACATCCTGCTTTTTTCGGGAAGCT 658
Query 680 TCCTACATTCTGGGCTGTTAAGACAAACATTCAGATTTCAGGGGAGCTTACAACTAGCCG 739
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 TCCTACATTCTGGGCTGTTAAGACAAACATTCAGGTTTCAGGGGAGCTTACAACTAGCCG 718
Query 740 TGGACCCGGCACTTCTTTCCAGTTTGCTCTTTCCTTGGCGGAGCAGCTCTTCGGAGAAAC 799
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 TGGACCCGGCACTTCTTTTCAGTTTGCTCTTTCCTTGGCGGAGCAGCTCTTTGGAGAAAC 778
Query 800 CACAGCCAAGTCAATTGAAGAGTTTCTGCTTCTGCGTGATGGTTACCAGAATCCTAAGAA 859
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CACAGCCAAGTCAGTTGAAGAGTTTCTGCTTCTGCGTGATGGTTACCAGAATCCTAAGAA 838
Query 860 CAAAGAGTTCAATAGCATTGACTGGTCTTTAGACCACACACCTCGTGTTCTTATCCCGGT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 CAAAGAGTTCAATAGCATTGACTGGTCTTTAGACCACACACCTCGTGTTCTTATCTCGGT 898
Query 920 AGCCAACGGGTCTGAAGCGGTTGAACTGGTCTCAATTGCAGATGTTCTTAGAAGAGCCAA 979
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 899 AGCCAACGGGTCTGAAGAGGTTGAATTGGTCACAATTGCAGATGTTCTTAGAAGAGCCAA 958
Query 980 AGTAGATGTCACGGTTTCATCAGTTGAACGATCTTTGCGGATTACGGCATTCCAAGGCAC 1039
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 AGTAGATGTCACTGTTGCATCAGTTGAACGATCTTTGCGGATTACGGCATCCCAAGGCAC 1018
Query 1040 CAAAATTATCACTGACAAATTGATTGGTGAAGCTGCTGAGTCATCATATGATCTAATCAT 1099
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 CAAAATTATCACCGACAAATTGATTGGTGAAGCTGCTGAGTCATCATATGATCTAATCGT 1078
Query 1100 TCTTCCGGGAGGCCATACTGGCTCAGAACGTCTGCAGAAGTCCAAAATTCTCAAGAAACT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1079 TCTTCCGGGAGGCCATACTGGCTCAGAACGTCTGCAGAAGTCCAAAATTCTGAAGAAACT 1138
Query 1160 GCTCAGGGAACAACATGAATCTGGGCGAATATATGGAGCTACCAACTCTTCATCTACCGT 1219
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1139 GCTCAGGGAACAACATAAATCTGGGAGAATATATGGAGCTGCCAACTCTTCATCTACCGT 1198
Query 1220 TTTGCATAAACATGGTTTACTCAAGGAGAAGAGAACGACTGTGTATCCTTCAGAGTCAGA 1279
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 CCTACATAAACATGGTTTACTCAAGGAGAAGAGAACGACTGTGTATCCTTCAGAGACAGA 1258
Query 1280 CGAGCCTATGAATCAACAAATGATCGAAGGAGCCGAAGTTGTTATAGATGGAAACGTGAT 1339
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 CGGGCCTATGAATCAACAAATGATCGAAGGAGCAGAAGTTGTTATAGATGGAAACGTGAT 1318
Query 1340 TACAAGTTTGGGGCTCGCAACTGTTACCAAATTTTCCCTGGCTATTGTTAGCAAGCTGTT 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TACAAGTTTGGGGCTCGCAACTGTTACCAAATTTTCCCTGGCTATTGTTAGCAAGCTGTT 1378
Query 1400 CGGACATGCTAGAGCAAGGAGTGTTTCAGAAGGGCTTGTGCATGAGTATCCAAGGCAGTA 1459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 TGGACATGCTAGAGCAAGGAGTGTTTCAGAAGGGCTTGTGCATGAGTATCCAAGGCATTA 1438
Query 1460 A-C-C-GTTTGAAAGCATCTT 1477
| | | |||||||||||||||
Sbjct 1439 AACACCGTTTGAAAGCATCTT 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5