BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34090.3 Length=1398 Score E Sequences producing significant alignments: (Bits) Value Ahg944508 jgi|Araly1|944508|scaffold_700737.1 1402 0.0 Ahg483660 jgi|Araly1|483660|fgenesh2_kg.4__2720__AT4G34080.1 176 4e-43 > Ahg944508 jgi|Araly1|944508|scaffold_700737.1 Length=1033 Score = 1402 bits (759), Expect = 0.0 Identities = 884/941 (94%), Gaps = 21/941 (2%) Strand=Plus/Plus Query 353 GGCATGTATCATTTATCAAAGATGTTGCTGCCACTGAACCTCCAATGCATCTTCATCACT 412 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 106 GGCATGTATCTTTTATCAAAGATGTAGCTGCCACTGAACCTCCAATGCATCTTCATCACT 165 Query 413 TACTCAAAGTGCTTCAAACAAGAGGTGAGACAATCATATCTCCTGGAGCTAAGCAGGGAC 472 |||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 166 TACTCAAAGTACTTCAAACAAGAGGTGAAACTATTATATCTCCTGGAGCTAAGCAGGGAC 225 Query 473 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCGTCAGGCTCTGTTACTGCGCTTTTGA 532 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 226 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCTTCAGGCTCTGTTACTGCGCTTTTGA 285 Query 533 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGAGGAGTGGAG 592 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 286 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGGGGAGTGGAG 345 Query 593 TCAGGCTTATAGCTAGAAATGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 652 || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 346 TCCGGCTTATTGCTAGAAACGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 405 Query 653 CACAAGAGTTGACAGAACTATATCGTGCTTCGGGAGAGGCAGGTGAAAAACTTTACGAAA 712 ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||| Sbjct 406 CACAAGAGTTGACAGAACTTTATCGTGCTTCAGAAGAGGCAGGTGAAAAACTTTACAAAA 465 Query 713 AGGGTGCTTTTGCTGAATCTGAAATTGACAATCTCGATGTCTATGTTTTGAAAAAGGTTG 772 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 466 AGGGTGCTTTTGCTGAATCTCAAATTGACAATCTCGATGTCTATGTCTTGAAAAAGGTTG 525 Query 773 GACTGTTTCCAGATTTGTTGGAGCGGAAAGTATTACGGCATTTTGATGAAGGAGATCATG 832 ||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct 526 GACTGTTTCCAGATTTGTTGGAGCGAAAAGTATTAAGACATTTTGATGAAGGAGATCATG 585 Query 833 TTTCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 892 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 TATCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 645 Query 893 GACCTTTTGTATATTATGCAAACATACTACAGAAGTTTATTCTTATTCGCAGGGTAGGGC 952 |||||||||||||||||||||| ||||| |||||| | |||||| Sbjct 646 GACCTTTTGTATATTATGCAAATATACTGCAGAAG-------------G-----TAGGGC 687 Query 953 GGAATGT-AGAAGCAAAAGATGCGGCTAGGGTAGCATTGAGATCACCGTGGTGGACATTA 1011 ||||| | |||||||||||| |||||||| |||||||||| |||||| |||||||||||| Sbjct 688 GGAAT-TCAGAAGCAAAAGACGCGGCTAGAGTAGCATTGAAATCACCTTGGTGGACATTA 746 Query 1012 GGATGTCCGTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 1071 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 GGATGTCCTTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 806 Query 1072 ATAAGGGAAAAAGTGAGTGATGAAGGTCGTTTTGAAGATTTGCATAAAGGCAAAGCTCCA 1131 || |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 807 ATCAGGGAAAAGGTGAGTGATGAAGGTCGTTTTGAAGATTTAAAGAAAGGCAAAGCTCCA 866 Query 1132 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATCGAAGGAACT 1191 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 867 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATTGAAGGAACT 926 Query 1192 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATC 1251 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 927 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATT 986 Query 1252 TCTAATTTCGTTTTGTACACAGATTGAATCCATATTA-ATG 1291 |||||||||||||||||||||||||||||||| |||| ||| Sbjct 987 TCTAATTTCGTTTTGTACACAGATTGAATCCAGATTATATG 1027 Score = 154 bits (83), Expect = 2e-36 Identities = 101/109 (93%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 83 AGATAGAGAGATAAGAAGAAGCCATGGGTTCGATTTCGATGCACATAACTCCCTCTACTG 142 |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 1 AGATAGAGAGAT---AAGAAGCCATGGGTTCGATTTCGCTGCACATAACTCCTTCTACTA 57 Query 143 CTCTCCCTATACGCCATTTCAGAGCTAGAGTCTCTTGTTGCTCTTCTGG 191 |||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 58 CTCTCCCTTTACGCCATTTCAGAGCTAGAGTCTCTTGTTTCTCTTCTGG 106 > Ahg483660 jgi|Araly1|483660|fgenesh2_kg.4__2720__AT4G34080.1 Length=1083 Score = 176 bits (95), Expect = 4e-43 Identities = 103/107 (96%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1292 TATGTTCTTCACAACACTTTCCATGTATGAATCAGAGAACTCACTACCCTTTTTCACTTG 1351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 TATGTTCTTCACAACACTTTCCATGTATGAATCAGAGAACTCACTACCCTTTTTCACTTG 1024 Query 1352 GAAGATCTTTGCAGCTGGATCAAAAGAGTAAGCAAGCTTGTGCAAGA 1398 ||||||||| |||||||||||||| ||||| |||||| ||||||||| Sbjct 1023 GAAGATCTTAGCAGCTGGATCAAACGAGTATGCAAGCCTGTGCAAGA 977 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52259816140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5