BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34110.1 Length=2441 Score E Sequences producing significant alignments: (Bits) Value Ahg888668 jgi|Araly1|888668|Al_scaffold_0007_654 3064 0.0 Ahg931277 jgi|Araly1|931277|scaffold_303734.1 1426 0.0 Ahg932329 jgi|Araly1|932329|scaffold_400317.1 307 2e-82 > Ahg888668 jgi|Araly1|888668|Al_scaffold_0007_654 Length=1878 Score = 3064 bits (1659), Expect = 0.0 Identities = 1817/1892 (96%), Gaps = 16/1892 (1%) Strand=Plus/Plus Query 346 ATGGCGCAGGTTCAACTTCAGGGTCAGACTCCGAATGGTTCGACCGCGGCGGTCACTTCT 405 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 1 ATGGCGCAGGTTCAACTTCAGGGTCAGACTCCGAATGGTTCGACCGTGGCGGTCACTGCT 60 Query 406 GCTCCGGCGACGTCAGGTGGAGCAACGGCGACCCAGTTTGGTAACACGTCGCTTTATGTG 465 ||| ||| |||||||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 61 GCTTCGGTGACGTCAGGTGGAGCAACGGCGGCCGGGTTTGGTACCACGTCGCTTTATGTG 120 Query 466 GGGGATCTCGATTTCAATGTGACGGACTCGCAGCTTTTCGATGCGTTTGGCCAAATGGGT 525 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 GGGGATCTCGATTTCAATGTGACGGACTCGCAGCTTTTCGATGCGTTTAGCCAAATGGGT 180 Query 526 ACTGTGGTCACCGTTCGTGTCTGTAGGGATTTGGTCACTCGCCGATCTCTTGGCTATGGA 585 | |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 181 CCAGTGGTCTCCGTTCGTGTCTGTAGGGATTTGGCCACTCGCCGATCCCTTGGCTATGGA 240 Query 586 TACGTTAACTTCACCAATCCCCAAGACGCTGCAAGAGCGATCCAAGAACTGAATTACATA 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACGTTAACTTCACCAATCCCCAAGACGCTGCAAGAGCGATCCAAGAACTGAATTACATA 300 Query 646 CCTCTTTATGGAAAACCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTGTTCGCCGA 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 CCTCTTTATGGAAAACCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTGTTCGTCGA 360 Query 706 AGTGGCGCTGGCAACATTTTTATTAAGAATTTGGACGAGTCCATCGACCACAAAGCACTG 765 ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 361 AGTGGCGCTGGGAACATTTTCATCAAGAATTTGGACGAGTCCATCGACCACAAAGCACTA 420 Query 766 CATGATACTTTTTCA-TCGTTTGGAAACATTGTGTCGTGCAAGGTAGCTGTCGATTCTTC 824 ||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||| Sbjct 421 CATGATACTTTTTCAGT-GTTTGGAAACATTGTGTCGTGCAAGGTAGCTGTGGACTCTTC 479 Query 825 AGGCCAGTCAAAAGGCTATGGGTTTGTGCAATACGCCAATGAAGAATCTGCCCAGAAAGC 884 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 480 AGGCCAATCAAAAGGCTATGGCTTTGTGCAATACGCCAATGAAGAATCTGCCCAGAAAGC 539 Query 885 TATAGAGAAACTGAACGGCATGTTGCTCAATGACAAGCAAGTGTATGTGGGTCCTTTCCT 944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TATAGAGAAACTGAACGGCATGTTGCTCAATGACAAGCAAGTGTATGTGGGTCCTTTCCT 599 Query 945 GAGGAGACAAGAAAGAGACTCCACTGCTAACAAAACGAAATTCACCAATGTGTATGTGAA 1004 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GAGGAGACAAGAAAGAGATTCCACTGCTAACAAAACGAAATTCACCAATGTGTATGTGAA 659 Query 1005 GAATCTCGCGGAAAGTACTACCGATGATGACTTGAAGAATGCTTTTGGCGAGTATGGAAA 1064 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 660 GAATCTTGCGGAAAGTACTACCGATGATGACTTGAAGAACGCTTTTGGCGAGTATGGAAA 719 Query 1065 GATAACAAGTGCTGTCGTGATGAAAGATGGAGAAGGGAAGTCCAAGGGCTTTGGGTTTGT 1124 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 720 GATAACAAGTGCTGTGGTGATGAAAGATGGAGATGGGAAGTCTAAGGGCTTTGGGTTTGT 779 Query 1125 CAACTTTGAAAATGCTGATGATGCTGCTAGGGCTGTGGAGTCTCTCAATGGGCACAAATT 1184 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 780 TAACTTTGAAAATGCTGATGATGCTGCTAGGGCTGTGGAGTCTCTCAATGGGCACAAACT 839 Query 1185 TGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGAAGTCAGAGAGGGAAACAGAATT 1244 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 840 TGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGAAGTCGGAGAGGGAAACAGAATT 899 Query 1245 AAGGGTCCGTTATGAACAGAATTTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTT 1304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AAGGGTCCGTTATGAACAGAATTTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTT 959 Query 1305 GTATGTTAAGAATTTGGATCCTAGCATTTCAGATGAGAAACTTAAAGAGATCTTTTCTCC 1364 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 960 GTATGTGAAGAATTTGGATCCTAGCATTTCAGATGAGAAGCTTAAAGAGATCTTTTCTCC 1019 Query 1365 TTTTGGTACCGTTACATCTAGCAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTC 1424 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1020 TTTTGGTACCGTTACATCTTGCAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTC 1079 Query 1425 AGGTTTTGTTGCTTTCGCAACTCCCGAAGAAGCAACTGAAGCTATGTCACAGTTGAGCGG 1484 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1080 AGGTTTTGTTGCTTTCTCAACTCCCGAAGAAGCAACCGAAGCTATGTCACAGTTGAGCGG 1139 Query 1485 TAAAATGATCGAAAGCAAGCCACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAG 1544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TAAAATGATCGAAAGCAAGCCACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAG 1199 Query 1545 GGTCAGACTACAGGCTCAGTTTTCCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGG 1604 || | | ||| | ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1200 GG-C----T-CAG--T---TTT-CCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGG 1247 Query 1605 TCCCCGCATGCCAGTGTATCCCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGG 1664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 TCCCCGCATGCCAGTGTATCCCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGG 1307 Query 1665 TCAGGCCCCTCCTGCCATGATTCCTCCCCAGCCTGGGTATGGATACCAACAGCAGCTTGT 1724 ||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1308 TCAGGGCCCTCCTACCATGATTCCTCCCCAGCCTGGGTTTGGGTACCAACAGCAGCTTGT 1367 Query 1725 TCCTGGAATGAGACCTGGTGGGGGTCCTGTACCCAGTTTCTTCATGCCTATGGTTCAGCC 1784 |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| Sbjct 1368 TCCTGGAATGAGACCTGGTGGGGGCCCTGGACCCAATTTCTTCATGCCTATGGTTCAGCA 1427 Query 1785 ACAGCAGCAGCGTCCTGGAGGAGGAAGACGTCCTGGGGGAATCCAACACTCCCAGCAGCA 1844 |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 1428 ACAGCAGCAGCGTCCTGGGGGAGGAAGACGTCCTGGGGGAATCCAACACCCCCAGCAGCA 1487 Query 1845 AAATCCCATGATGCAGCAACAGATGCATCCAAGGGGTCGGATGTTCCGGTATCCCCAAGG 1904 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1488 AAATCCCATGATGCAGCAACAGATGCATCCAAGGGGTCGGATGATCCGGTATCCCCAAGG 1547 Query 1905 GCGTGGTGGTAGTGGTGATGTGCCTCCATATGATATGGGCAACAACATGCCATTGACTAT 1964 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1548 ACGTGGTGGTAGTGGTGAGGTGCCTCCATATGATATGGGCAACAACATGCCATTGCCTAT 1607 Query 1965 TGGAGCTTTGGCTTCAAATCTGTCTAATGCTACTCCAGAGCAACAGAGGACGATGCTGGG 2024 ||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1608 TGGGGCTTTGGCTTCACATCTGGCTAATGCTTCTCCAGAGCAACAGAGGACGATGCTGGG 1667 Query 2025 TGAG-GTGCTGTACCCGTTGGTGGAGCAGGTTGAGGCAGAGTCTGCAGCCAAAGTGACTG 2083 |||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1668 TGAGAGT-CTGTACCCGTTGGTGGAGCAGCTTGAGGCAGAGTCTGCAGCCAAAGTGACTG 1726 Query 2084 GGATGCTTTTGGAGATGGACCAGACTGAAGTGCTCCATCTGTTGGAGTCACCAGAAGCTC 2143 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1727 GGATGCTTTTGGAGATGGACCAGACTGAAGTGCTCCATCTATTGGAGTCACCAGAAGCTC 1786 Query 2144 TCAAGGCCAAAGTTGCAGAGGCTATGGATGTTCTCAGGAGTGTCGCTGCTGGTGGTGCAA 2203 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1787 TCAAGGCCAAAGTTGCAGAGGCTATGGATGTTCTCAGGAGCGTCGCTGCTGGTGGTGCAG 1846 Query 2204 CCGAGCAGCTCGCTTCCTTGAACCTCTCTTAA 2235 |||||||||||||||||||||||||||||||| Sbjct 1847 CCGAGCAGCTCGCTTCCTTGAACCTCTCTTAA 1878 > Ahg931277 jgi|Araly1|931277|scaffold_303734.1 Length=2011 Score = 1426 bits (772), Expect = 0.0 Identities = 1266/1501 (84%), Gaps = 47/1501 (3%) Strand=Plus/Plus Query 439 CAGTTTGGTAAC-ACGTCGCTTTATGTGGGGGATCTCGATTTC-AATGTGACGGACTCGC 496 ||||||||| || || |||||||| || || ||||| || | | || |||||||| |||| Sbjct 128 CAGTTTGGT-ACTACATCGCTTTACGTTGGAGATCTGGA-TCCAAACGTGACGGATTCGC 185 Query 497 AGCTTTTCGATGCGTTTGGCCAAATGGGTAC-TGTGGTCA-CCGTTCGTGTCTGTAGGGA 554 ||||||| ||||||||| |||| |||||| | || || | | ||||| || ||||| || Sbjct 186 AGCTTTTTGATGCGTTTAGCCAGATGGGT-CAAGTTGT-ATCAGTTCGAGTTTGTAGAGA 243 Query 555 TTT-GGTCACTCGCCGATCTCTTGGCTATGGATACGTTAACTTCACCAATCCCCAAGACG 613 ||| | | ||||| |||||||||| ||||| || ||||||||||||| ||| ||||| | Sbjct 244 TTTAGCT-ACTCGGAGATCTCTTGGTTATGGTTATGTTAACTTCACCAGTCCTCAAGATG 302 Query 614 CTGCAAGAGCGATCCAAGAACTGAATTACATACCTCTTTATGGAAAACCTATTAGGGTTA 673 |||||||||||||||| |||||||| || ||||||||| |||| |||||| ||||||||| Sbjct 303 CTGCAAGAGCGATCCAGGAACTGAACTATATACCTCTTAATGGGAAACCTGTTAGGGTTA 362 Query 674 TGTATTCTCATCGTGATCCTAGTGTTCGCCGAAGTGGCGCTGGCAACATTTTTATTAAGA 733 |||||||||||||||||||||||||||| |||||||| || || || |||||||| |||| Sbjct 363 TGTATTCTCATCGTGATCCTAGTGTTCGTCGAAGTGGTGCAGGAAATATTTTTATCAAGA 422 Query 734 ATTTGGACGAGTCCATCGACCACAAAGCACTGCATGATACTTTTTCA-TCGTTTGGAAAC 792 |||||||| | ||||| ||||||||||| |||||||||| ||||| | |||||| ||| Sbjct 423 ATTTGGACAAATCCATTGACCACAAAGCGTTGCATGATACGTTTTCTGT-GTTTGGGAAC 481 Query 793 ATTGTGTCGTGCAAGGTAGCTGTCGATTCTTCAGGCCAGTCAAAAGGCTATGGGTTTGTG 852 ||| | ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 482 ATTATCTCGTGCAAGGTAGCTGTGGATTCTTCAGGACAATCAAAAGGCTATGGGTTTGTG 541 Query 853 CAATACGCCAA-TGAAGAATCTGCCCAGAAAGCTATAGAGA-AACTGAACGGCATGTTGC 910 ||||| | || |||||||||||| ||||||||||| | | || ||||||| ||||||| Sbjct 542 CAATATGA-AACTGAAGAATCTGCTCAGAAAGCTATGG-GTCAATTGAACGGTATGTTGC 599 Query 911 TCAATGACAAGCAAGTGTATGTGGGTCCTTTCCTGAGGAGACAAGAAAGAGACTCCACTG 970 | |||||||||||||||||||| || |||||||| ||||| ||||||||||| || |||| Sbjct 600 TAAATGACAAGCAAGTGTATGTTGGACCTTTCCTCAGGAGGCAAGAAAGAGATTCTACTG 659 Query 971 CTAACAAAACGAA-ATTCACCAATGTGTATGTGAAGAATCTCGCGGAAAGTACTACCGAT 1029 ||||||||| || ||||||||| ||||||||||||||||| || ||| || || ||| Sbjct 660 GTAACAAAAC-AATATTCACCAACGTGTATGTGAAGAATCTTGCTGAATCAACCACTGAT 718 Query 1030 GATGACTTGAAGAATGCTTTTGGCGAGTATGGAAAGATAACAAGTGCTGTCGTGATGAAA 1089 ||||| |||||||| |||||| |||| ||| ||||||||||||||||| ||||||||| Sbjct 719 GATGATTTGAAGAACATTTTTGGTGAGTTTGGTAAGATAACAAGTGCTGTGGTGATGAAA 778 Query 1090 GATGGAGAAGGGAAGTCCAA-GGGCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGC 1148 |||||||| |||||| |||| ||||||||||||||| |||||||||||||| |||||||| Sbjct 779 GATGGAGAGGGGAAG-CCAAAGGGCTTTGGGTTTGTTAACTTTGAAAATGCCGATGATGC 837 Query 1149 TGCTAGGGCTGTGGAGTCTCTCAATGGGCACAA-ATTTGATGATAAGGAGTGGTATGTTG 1207 ||||| ||||||||||||||||||||| | || |||||| ||||||||||||| ||||| Sbjct 838 TGCTAAGGCTGTGGAGTCTCTCAATGGAAA-AACATTTGAGGATAAGGAGTGGTTTGTTG 896 Query 1208 GTAGAGCCCAGAAGAAGTCAGAGAGGGAAACAGAATTAAGGGTCC-GTTATGAACAGAAT 1266 ||||||||||||||||||| || ||||||| ||| ||| ||| | || |||| |||| | Sbjct 897 GTAGAGCCCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCAGT-ATGAGCAGAGT 955 Query 1267 TTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTTGTATGTTAAGAATTTGGATC-C 1325 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 956 TTGAAGGAAGCTGCTGACAAGTTTCAAAGTTCTAACTTGTATGTTAAGAATTTAGATGAC 1015 Query 1326 TAGCATTTCAGATGAGAAACTTAAAGAGATCTTTTCTCCTTTTGGTACCGTTACATCTAG 1385 || |||| || |||||||| |||||| ||||| | |||| ||| || ||||| ||| | Sbjct 1016 -AGTGTTTCTGACGAGAAACTCAAAGAGCTCTTTACACCTTATGGCACTGTTACGTCTTG 1074 Query 1386 CAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGC-TTTCGCAA 1444 |||||||||||||||||||||||| | ||||| ||||| |||||||| || ||| ||| Sbjct 1075 CAAGGTGATGCGGGATCCTAATGGCATAAGCAGGGGCTCGGGTTTTGTAGCATTTT-CAA 1133 Query 1445 CTCCCGAAGAAGCAACTGAAGCTATGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGC 1504 |||| ||||||||||| ||||||||||| || |||| ||||||||||| |||| ||| | Sbjct 1134 CTCCTGAAGAAGCAACCAAAGCTATGTCAGAGATGAGTGGTAAAATGATTGAAAACAAAC 1193 Query 1505 CACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGGTCAGACTACAGGCTCAGT 1564 | |||||||| ||| |||| ||| | ||||| || ||||||| |||||| |||||||||| Sbjct 1194 CTCTCTATGTTGCTGTTGCTCAGAGAAAGGAGGATAGAAGGGCCAGACTGCAGGCTCAGT 1253 Query 1565 TTTCCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATC 1624 |||||||| |||| |||||||||||||| || | |||||||| || |||||| | |||| Sbjct 1254 TTTCCCAAATGAGACCAGTTGCAATGCAACCACCGGTTGGTCCTCGTATGCCAATTTATC 1313 Query 1625 CCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCAGGCCCCTCCTGCCATGA 1684 |||| |||||||| || |||||||||| |||||| ||||||||||| |||||| | |||| Sbjct 1314 CCCCTGGTGGTCCCGGAATTGGACAACCAATGTTTTATGGTCAGGCACCTCCTACTATGA 1373 Query 1685 TTCCTCCCCAGCCTGGGTATGGATACCAACAGCAGCTTGTTCCTGGAATGAGACCTGGTG 1744 || || | ||||| |||| ||| ||||| |||||||| |||||||||||||||||||||| Sbjct 1374 TTTCTTCACAGCCCGGGTTTGGCTACCAGCAGCAGCTGGTTCCTGGAATGAGACCTGGTG 1433 Query 1745 GGGGTCCTGTACCCAGTTTCTTCATGCCTATGGTTCAGCCACAGC-AGCAGCGTCCTGGA 1803 | || || | | || ||||||||||| |||||||||| | || |||| ||||||||| Sbjct 1434 GAGGACCAATGCACAACTTCTTCATGCCAATGGTTCAGC-AGGGCCAGCAACGTCCTGGA 1492 Query 1804 GGAGGAAGACGTCCTGG-GGGAATCCAACACTCCCAGCAGCA--A--AA-T-CCCATGAT 1856 || | | |||||||||| |||| |||| || || |||||||| | || | |||||||| Sbjct 1493 GG-G-A-GACGTCCTGGAGGGA-TCCAGCAATCTCAGCAGCAGCAGCAAGTTCCCATGAT 1548 Query 1857 GCAGCA--A-CA---GATGCATCCAAGGGGTCGGATGTTCCGGTATCCCCAAGGGCGTGG 1910 |||||| | || |||||| ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 1549 GCAGCAGCAACACCAGATGCACCCAAGGGGTCGAATGTTCCGCTATCCTCAAGGCCGTGG 1608 Query 1911 T 1911 | Sbjct 1609 T 1609 > Ahg932329 jgi|Araly1|932329|scaffold_400317.1 Length=2014 Score = 307 bits (166), Expect = 2e-82 Identities = 784/1075 (73%), Gaps = 71/1075 (7%) Strand=Plus/Plus Query 699 TCGCCGAAGTGGCGCTGGCAACATT-TTTATTAAGAATTTGGACGAGTCCA-TCGACCAC 756 |||| ||||||| | ||| || || ||| | ||||||||||| ||| || | || || Sbjct 395 TCGCAGAAGTGGTGTTGGGAA-TTTGTTTGTAAAGAATTTGGATAAGT-CAGTTGATAAC 452 Query 757 AAAGCACTGCATGATACTTTTTCATCGTTTGGAAAC-ATTGTGTCGTGCAAGGTAGCTGT 815 ||| | ||||| || || ||||| || ||| || |||||||| || ||||| |||| Sbjct 453 AAAACTCTGCACGAGACGTTTTCCGGGTGTGG-GACGATTGTGTCCTGTAAGGTTGCTG- 510 Query 816 C-GATTC-T-TCAGGCCAGTCAAAAGGCTATGGGTTTGTGCAATACGCCAATGAAGAATC 872 | || || | | || ||||| | ||| |||||||||||||| | | | ||| || || Sbjct 511 CTGA-TCATAT-GGGTCAGTCTAGAGGATATGGGTTTGTGCAGTTTGATACTGAGGATTC 568 Query 873 TGCCCAGAAAGCTATAGAGAAACTGAACGGC-ATGTTGCTCAATGACAAGCAAG-TGTAT 930 || |||| ||||| ||||| ||||| ||| | | || | |||||||| | || | | | Sbjct 569 AGCTAAGAATGCTATTGAGAAGCTGAATGGCAAAG-TGTTGAATGACAAAC-AGAT-TTT 625 Query 931 -GTGGGTCCTTTCCTGAG-GAGACAAGAAAGAGACTCCACTGCTAACAAAACGAAATTCA 988 || || ||||| || | || | |||||||| || ||||| | || | ||| || | Sbjct 626 CGTTGGACCTTTTCTCCGTAAG-GAGGAAAGAGAGTCTGCTGCTGATAAGATGAAGTTTA 684 Query 989 CCAATGTGTATGTGAAGAATCTCG-CGGAAAG-TACTACCGATGATGACTTGAAGAATGC 1046 ||||||| |||||||||||||| | ||| | | ||||| |||||||| ||||||| | | Sbjct 685 CCAATGTTTATGTGAAGAATCT-GTCGG-AGGCGACTACTGATGATGAGTTGAAGACTAC 742 Query 1047 TTTTGG-CGAGTATGGAAAG-ATAACAAGTGCTGTCGTGATGAAAGATGGAGAAGGGAAG 1104 |||||| | ||||||| || || | || ||||| || |||| || ||||| ||||| Sbjct 743 TTTTGGTC-AGTATGG-TAGTATTTCGAGCGCTGTGGTTATGAGGGACGGAGATGGGAAA 800 Query 1105 TCCAAGG-GCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGCTGCTAGGGCTG-TGG 1162 | | ||| | ||||| |||||||||||||| ||| |||| |||||||| | |||| || Sbjct 801 T-CTAGGTGTTTTGGATTTGTCAACTTTGAGAATCCTGAAGATGCTGCCCGTGCTGTTGA 859 Query 1163 AGTCTCTCAATGGGCACAAATTTGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGA 1222 || |||| || || | || |||||||||||||||||||||||||||| ||| ||||||| Sbjct 860 AG-CTCTTAACGGAAAGAAGTTTGATGATAAGGAGTGGTATGTTGGTAAAGCTCAGAAGA 918 Query 1223 AGTCAGAGAGGGAAACA-GAATTAAGG-GTCCGTTATGAACAGAATTTGAAG-GAAGCTG 1279 | || ||||||||| | || || || | | |||||||| | | ||| || || | Sbjct 919 AATCTGAGAGGGAA-CTTGAGTTGAGCCGAA-GATATGAACA-AGGCTCAAGTGATGCAG 975 Query 1280 CAGACAAGTTTCAAAG-TTCAAACTTGTATGTTAAGAAT-TTGGATCCTAGCATTTCAGA 1337 | |||||||| | | || || || |||||||| || ||| || || | | | || Sbjct 976 GAAACAAGTTTGATGGGTTGAAT-TTATATGTTAAAAACCTTG-ATGATACCGTCACCGA 1033 Query 1338 TGAGAAACTTAAA-GAGATCTTTTCTCCTTTTGGTACCGTTACATCTAGCAAGGTGATGC 1396 ||| ||| || ||| | ||| || |||||||| |||| ||| ||||||| |||| Sbjct 1034 TGA-AAAGTTGCGTGAGTTGTTTGCTGAATTTGGTACAATTACGTCTTGCAAGGTTATGC 1092 Query 1397 GGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGCTTTCGCAACTCCC-GAAGAA 1455 |||| |||| ||| || |||||||| ||||| |||||||| ||| | || || | ||| Sbjct 1093 GGGACCCTAGTGGTACTAGCAAAGGATCAGGATTTGTTGCCTTCTCTGCTGCCAGT-GAA 1151 Query 1456 GCAACT-GAA-GCT-A-TGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGCCACTCTA 1511 || || || ||| | || | | | || ||||||||| | | | || ||| | || Sbjct 1152 GCTTCTAGAGTGCTGAATGA-A-A-T-GAATGGTAAAATGGTTGGTGGTAAACCATTGTA 1207 Query 1512 TGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGG-TCAGACTACAGGCTCAGTTTTCCC 1570 ||| ||| |||||||| |||| ||||| ||||||| | || || |||||||||||||| | Sbjct 1208 TGTCGCTCTTGCACAGAGGAAAGAAGAAAGAAGGGCTAAG-CTGCAGGCTCAGTTTTCTC 1266 Query 1571 AAGTGAGGCCAG-TTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATCCCCCG 1629 || |||| || | || | | | ||| ||| ||||| || |||||| | | ||| | Sbjct 1267 AAATGAGACCTGCTTTTA-TCC--CCGG-TGTGGGTCCTCGAATGCCAATATTTCCAG-G 1321 Query 1630 -GGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCA-GGCCCCTCCTGCCA-TGATT 1686 |||| ||| ||| |||||||||| || || || ||||| || || ||| ||| | || Sbjct 1322 TGGTGCTCCAGGTCTTGGACAACAGATCTTTTACGGTCAAGGGCC-TCCA-CCAATCATC 1379 Query 1687 CCTCCCCAGCCTGGGTAT-GGATACCAA-CAGCAGCTTGTTCCTGGAATGAGACC 1739 |||| ||||||||| | | || || || | ||||| ||||||||| ||||||| Sbjct 1380 CCTCACCAGCCTGGAT-TCGGTTATCAGTCT-CAGCTGGTTCCTGGATTGAGACC 1432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91987941675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5