BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34120.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491262 jgi|Araly1|491262|fgenesh2_kg.7__695__AT4G34120.1 1572 0.0
> Ahg491262 jgi|Araly1|491262|fgenesh2_kg.7__695__AT4G34120.1
Length=1067
Score = 1572 bits (851), Expect = 0.0
Identities = 1025/1101 (93%), Gaps = 44/1101 (4%)
Strand=Plus/Plus
Query 37 CCACCCAATCAAAACGcttctctcttcttctacttcttcac-t-tctctctccttcaaca 94
|||||||||||||||||||||| |||| | | ||||||||| | ||||||||||||||||
Sbjct 1 CCACCCAATCAAAACGCTTCTC-CTTC-T-T-CTTCTTCACTTCTCTCTCTCCTTCAACA 56
Query 95 aaattttctacctttgtttcttctctcAGATTTCATAAAGAAAAGATTTAATCTTTCATT 154
|||||||||||||||| | ||||||||||||||||||| |||||||| ||| |||||||
Sbjct 57 AAATTTTCTACCTTTG--T-TTCTCTCAGATTTCATAAA-AAAAGATTAAATTTTTCATT 112
Query 155 GGAA-TCTGTGA-GTAACAGAGGATAAGCGAATATGGGTTCAATCTCTTTATCCAATTCT 212
|||| || |||| || ||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 113 GGAATTC-GTGAGGT-ACAGAGGATAAGCGATTATGGGTTCCATCTCTTTATCCAATTCT 170
Query 213 ATGCCCATAACTCGACTTCCACTACTTACATCACTCTATCATCAAAGcttccttccgatt 272
|||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 171 CTGCCCATAACGCGACTTCCACTACTTACATCACTCAATCATCAATGCTTCCTTCCGATT 230
Query 273 tcttcttcatctttctctcttcttcctctctctAATCGTCGTCGCTCCTCCACTTTTTCA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCTTCTTCATCTTTCTCTCTTCTTCCTCTCTCTAATCGTCGTCGCTCCTCCACTTTTTCA 290
Query 333 CCGTCAATCACCGTCTCTGCCTTCTTCGCTGCTCCTGCCAGCGTTAATAATAATAACTCT 392
||||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 291 CCGTCAATCGCCGTCTCTGCCTTCTTCGCAGCTCCTGCCAGCG-T--TAATAATAACTCT 347
Query 393 GTTCCGGCAAAAAATGGAGGTTACACAGTTGGGGATTTCATGACTCCGAGACAGAATTTG 452
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 348 GTTCCGGCAAAAAATGGAGGTTACACTGTTGGGGATTTCATGACACCGAGACAGAATTTG 407
Query 453 CACGTTGTTAAGCCCTCTACGTCGGTCGATGATGCGTTGGAACTTCTGGTTGAGAAGAAA 512
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 408 CACGTTGTTAAGCCCTCAACGTCGGTCGATGATGCATTGGAACTTCTGGTTGAGAAGAAA 467
Query 513 GTCACGGGATTGCCTGTAATTGACGATAATTGGACACTGGTTGGTGTTGTTTCTGATTAC 572
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 468 GTCACGGGATTGCCTGTAATTGATGATAATTGGACACTGGTTGGCGTTGTTTCTGATTAC 527
Query 573 GATTTGCTTGCATTGGACTCCATCTCTGGTCGCAGTCAAAATGATACAAACTTGTTCCCT 632
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 528 GATTTGCTTGCACTGGACTCCATCTCTGGCCGCAGTCAAAATGATACAAACTTATTCCCT 587
Query 633 GATGTCGACAGTACCTGGAAAACGTTTAACGAACTACAGAAACTGATCAGTAAGACATAT 692
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 588 GATGTCGACAGTACCTGGAAAACGTTTAACGAACTCCAGAAACTGATCAGTAAGACATAT 647
Query 693 GGAAAAGTTGTTGGAGACTTGATGACACCGTCTCCTCTCGTTGTCCGTGATTCTACCAAT 752
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 648 GGAAAAGTTGTTGGAGACTTGATGACACCATCTCCTCTCGTTGTCCGTGATTCTACCAAT 707
Query 753 TTAGAAGATGCAGCCAGGTTGCTTCTGGAAACAAAGTTCCGAAGATTACCCGTTGTTGAT 812
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 708 TTAGAAGATGCAGCCAGGTTGCTTCTGGAAACAAAATTCCGAAGATTACCAGTCGTGGAT 767
Query 813 GCTGATGGAAAACTGATTGGGATCCTTACAAGGGGAAACGTTGTAAGGGCTGCGCTGCAG 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GCTGATGGAAAACTGATTGGGATCCTTACAAGGGGAAACGTTGTAAGGGCTGCGCTGCAG 827
Query 873 ATCAAACGGGAAACCGAGAACTCTACATAGCTAGGAAGCAGCAGTGATGGAG-CAGATC- 930
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 828 ATCAAACGGGAAACCGAGAACTCTACATAGCTAGGAAGCAGCAGTGATA-AGGCAGATCC 886
Query 931 -T-GAATCTGCCATAGTTAATAGCGAAATCTATTTATTCCATTGATATAAGTATATATGT 988
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 887 CTTGAATCTGCCATAGTTAATAGCGAAATCTATTTATTCCATTGATATAAGTATATATAT 946
Query 989 A-AC-CATTCTCTGTCAATTTTCGGTTTTCAGAAGCAATTTTTGTTACTTTAGGAGTAAC 1046
|| |||||||||| |||||| | | | ||||||||||||||||||||||
Sbjct 947 GCACTCATTCTCTGTTAATTTT---T-----G--G---TTTTTGTTACTTTAGGAGTAAC 993
Query 1047 ATTTCTCAGACTCGGAACTGAAGACAAATGGTATATTTGATACATATATGTTTATTGTAG 1106
||||||||||||| ||||||||||||||||||||| | | ||||| ||||||||||
Sbjct 994 ATTTCTCAGACTCAGAACTGAAGACAAATGGTATA---GCT---TATAT-TTTATTGTAG 1046
Query 1107 CACAGGTCTACTCTTATCACC 1127
|||| ||||||||||||||||
Sbjct 1047 CACAAGTCTACTCTTATCACC 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5