BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34135.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491260 jgi|Araly1|491260|fgenesh2_kg.7__693__AT4G34135.1 2466 0.0
Ahg888666 jgi|Araly1|888666|Al_scaffold_0007_652 1727 0.0
> Ahg491260 jgi|Araly1|491260|fgenesh2_kg.7__693__AT4G34135.1
Length=1662
Score = 2466 bits (1335), Expect = 0.0
Identities = 1482/1554 (95%), Gaps = 5/1554 (0%)
Strand=Plus/Plus
Query 27 TATTTTCTACGAACTTCAGAATCTTTCGTCTCTCTTAATTATTTTTCTCAAATTTCTCGA 86
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct 1 TATTTTCTACGAACTTCAGAATCTTTCATCTCTCTTAATTAATTTTCTCAAATTTCTCAA 60
Query 87 AACATCT-AGTTTTCTTTTCAACCAGCCAATCATGGGTAGTGATCATCATCATCGAAAGC 145
||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 61 AACATCTCA-TTTTCTTTTCAACCAGTCAATCATGGGTAGTGACCATCATCATCGAAAGC 119
Query 146 TCCACGTTATGTTCTTCCCTTTCATGGCTTATGGTCACATGATA-CCAACTCTAGACATG 204
|||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 120 TCCATGTTATGTTCTTCCCTTTCATGGCTTATGGCCACATGATACCCAACTCTAGATATG 179
Query 205 GCTAAGCTTTTCTCTAGCAGAGGAGCCAAATCCACAATCCTCACCACATCTCTCAACTCC 264
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GCTAAGCTTTTCTCTAGCAGAGGAGCCAAATCCACAATCCTCACCACACCTCTCAACTCC 239
Query 265 AAGATCCTCCAAAAACCCATCGACACATTCAAGAATCTGAATCCGGGTCTCGAAATCGAC 324
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 240 AAGATCCTCCAAAAACCCATCGACACATTCAAGAACCTGAATCCGAGTCTCGAAATCGAG 299
Query 325 ATCCAGATCTTCAATTTCCCTTGCGTGGAGCTGGGGTTACCAGAAGGATGTGAAAACGTT 384
|||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct 300 ATCCAGATCTTCGATTTTTCTTGCGTGGAGCTCGGGTTACCTGAAGGATGTGAAAACGTA 359
Query 385 GATTTCTTCACTTCAAACAACAATGATGATAAAAACGAGATGATCGTGAAATTCTTTTTC 444
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GATTTCTTCACTTCAAACAACAATGATGATAGAAACGAGATGATCGTGAAATTCTTTTTT 419
Query 445 TCGACAAGGTTTTTCAAAGACCAGCTTGAGAAACTCCTCGGGACAACGAGACCAGACTGT 504
|||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 420 TCGACAAGGTTTTTGAAAGACCAGCTTGAGAAACTCCTTGAGACAACGAGACCAGACTGT 479
Query 505 CTTATCGCCGACATGTTCTTCCCCTGGGCTACTGAAGCTGCTGGGAAGTTCAATGTGCCA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTATCGCCGACATGTTCTTCCCCTGGGCTACTGAAGCTGCTGGGAAGTTCAATGTGCCA 539
Query 565 AGACTTGTGTTCCACGGCACTGGCTACTTCTCTTTATGCGCTGGTTATTGCATCGGAGTG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 AGACTTGTGTTCCACGGCACTGGCTACTTCTCTTTATGCGCTGGTTATTGCATAGGAGTG 599
Query 625 CATAAACCACAGAAGAGAGTGGCTTCAAGCTCTGAGCCATTTGTGATTCCCGAGCTCCCT 684
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 CATAAACCACAGAAGAGAGTGGCTTCAAGCTGTGAGCCATTTGTGATTCCCGAGCTCCCT 659
Query 685 GGGAACATTGTGATAACTGAAGAACAGATCATAGATGGCGATGGAGAATCCGACATGGGA 744
||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 660 GGGAATATAGTGATAACTGAAGAACAGATCATAGATGGCGATGGGGAATCTGACATGGGA 719
Query 745 AAGTTTATGACTGAAGTTAGGGAATCGGAAGTGAAGAGCTCAGGAGTTGTTTTGAATAGT 804
|||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 720 AAGTTTATGACTGAAGTTAGGGAATCAGAAGTGAACAGCTCAGGAGTTGTTGTGAATAGT 779
Query 805 TTCTACGAGCTAGAACATGATTACGCCGATTTTTACAAAAGTTGTGTACAAAAGAGAGCG 864
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 780 TTCTACGAGCTAGAACATGATTATGCCAATTTTTACAAAAGTTGTGTACAAAAGAGAGCG 839
Query 865 TGGCATATCGGTCCGCTATCGGTTTACAACAGGGGATTTGAGGAGAAGGCTGAGAGAGGA 924
|||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 840 TGGCATATCGGTCCTCTCTCGGTTTACAACAGAGGATTTGAGGAGAAGGCTGGGAGAGGA 899
Query 925 AAGAAAGCGAACATTGATGAGGCTGAATGCCTCAAATGGCTTGACTCCAAGAAACCAAAT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 AAGAAAGCGAACATTGATGAGGCTGAATGCCTCAAATGGCTTGACTCCAAGAAACCAGAT 959
Query 985 TCAGTCATTTATGTTTCCTTTGGGAGCGTGGCTTTCTTCAAGAATGAACAGTTATTCGAG 1044
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 960 TCAGTCATTTATGTTTCCTTTGGGAGCGTGGCTTTCTTCAAGAATGAGCAGTTATTCGAG 1019
Query 1045 ATCGCTGCAGGGTTAGAAGCTTCCGGTACAAGTTTCATTTGGGTTGTTAGGAAAACCAAA 1104
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |
Sbjct 1020 ATCGCTGCAGGGTTAGAAGCTTCCGGCACAAGTTTCATCTGGGTTGTTAGGAAAGCCACA 1079
Query 1105 GATGATAGAGAAGAATGGTTACCAGAAGGGTTCGAAGAGAGGGTGAAAGGGAAAGGTATG 1164
||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1080 GATGACAAAGAAGAATGGTTACCAGAAGGGTTCGAAGAGAGGGTGAAAGGGAAAGGGATG 1139
Query 1165 ATAATAAGAGGATGGGCACCACAGGTGCTGATACTTGACCACCAAGCAACCGGTGGGTTT 1224
||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct 1140 ATAATAAGAGGATGGGCTCCTCAAGTTCTGATACTTGACCACCAAGCAACCGGTGGGTTC 1199
Query 1225 GTGACCCATTGCGGCTGGAACTCGCTTCTTGAAGGAGTGGCTGCAGGGCTACCAATGGTG 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 GTGACCCATTGCGGCTGGAACTCGCTTCTTGAAGGAGTGGCTGCAGGGCTACCGATGGTG 1259
Query 1285 ACATGGCCTGTAGGAGCGGAGCAATTCTACAATGAGAAATTGGTTACGCAAGTGCTCAGA 1344
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1260 ACATGGCCGGTAGGAGCGGAGCAATTCTACAACGAGAAATTGGTTACACAAGTGCTCAGA 1319
Query 1345 ACAGGAGTGAGCGTGGGAGCGAGCAAG-CATATGAAAGTTATGATGGGAGATTTCATTAG 1403
|||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||
Sbjct 1320 ACAGGAGTGAGCGTGGGAGCGAA-AAGGCATGTGAAGGTTATGATGGGAGATTTCATTAG 1378
Query 1404 CAGAGAGAAAGTGGATAAAGCGGTGAGGGAGGTTTTGGCTGGGGAAGCAGCAGAGGAGAG 1463
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1379 CAGAGAGAAAGTGGATAAAGCGGTGAGGGAGGTTTTTGCTGGGGAAGCGGCAGAGGAGAG 1438
Query 1464 GCGGAGACGGGCAAAGAAGCTAGCGGCGATGGCTAAAGCTGCCGTGGAAGAAGGAGGGTC 1523
|||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1439 GCGGAGGCGGGCAAAGAAGCTGGCGGCGATGGCTAAAGCCGCGGTGGAAGAAGGAGGGTC 1498
Query 1524 TTCCTTCAACGATCTAAACAGCTTCATGGAAGAGTTTAGTTCATAATCTTCATA 1577
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1499 TTCCTTCAATGATCTAAACAGTTTCATGGAAGAGTTTAGTTCATAATCTTCATA 1552
Score = 99.0 bits (53), Expect = 1e-19
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1696 CTCTATTATCTTCAGCATAATCCTCTGTTTTGTTAGGAGAAAATCAATGGTTCAAGATTC 1755
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||
Sbjct 1595 CTCTATTATCTTCAGCATAATCCTCTGTTTTGTTAGAAGAAAACCAATGGTTAAAGAATC 1654
Query 1756 ACTATTTT 1763
| ||||||
Sbjct 1655 AATATTTT 1662
> Ahg888666 jgi|Araly1|888666|Al_scaffold_0007_652
Length=1449
Score = 1727 bits (935), Expect = 0.0
Identities = 1287/1456 (88%), Gaps = 27/1456 (2%)
Strand=Plus/Plus
Query 118 ATGGGTAGTGATCATCATCATCGAAAGCTCCACGTTATGTTCTTCCCTTTCATGGCTTAT 177
||||||||| | ||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGGTAGT-A--ATCCTCATCGTAAGCTCCATGTTATGTTCTTCCCTTTCATGGCTTAT 57
Query 178 GGTCACATGATACCAACTCTAGACATGGCTAAGCTTTTCTCTAGCAGAGGAGCCAAATCC 237
|| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GGCCACCTGATACCAACTTTAGACATGGCTAAGCTTTTCTCTAGCAGAGGAGCCAAATCT 117
Query 238 ACAATCCTCACCACATCTCTCAACTCCAAGATCCTCCAAAAACCCATCGACACATTCAAG 297
||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 118 ACAATCCTCACCACACCTCTCAACTCCAAGATCCTACAAAAACCAATCGACACATTCAAG 177
Query 298 AATCTGAATCCGGGTCTCGAAATCGACATCCAGATCTTCAATTTCCCTTGCGTGGAGCTG 357
|| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 AACCTGAATCCGAGTCTTGAAATCGACATCCAGATCTTCGATTTCCCTTGCGTGGAGCTC 237
Query 358 GGGTTACCAGAAGGATGTGAAAACGTTGATTTCTTCACTTCAAACAACAATGATGATAAA 417
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 238 GGGTTACCAGAAGGATGCGAAAACGTCGATTTCTTCACCTCAAACAACAATGATGATAGA 297
Query 418 AACG-AGATGATCGTGAAATTCTTTTTCTCGACAAGGTTTTTCAAAGACCAGCTTGAGAA 476
| | | ||| | |||| |||||| | ||||| ||||||||||||||||||||||||||
Sbjct 298 CA-GTATCTGACCTTGAAGTTCTTTCTGTCGACGAGGTTTTTCAAAGACCAGCTTGAGAA 356
Query 477 ACTCCTCGGGACAACGAGACCAGACTGTCTTATCGCCGACATGTTCTTCCCCTGGGCTAC 536
||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 357 GCTCCTCGAGACAACGAGGCCGGACTGTCTTATCGCCGACATGTTCTTCCCATGGGCTAC 416
Query 537 TGAAGCTGCTGGGAAGTTCAATGTGCCAAGACTTGTGTTCCACGGCACTGGCTACTTCTC 596
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 TGAAGCTGCTGAAAAGTTGAATGTGCCAAGACTTGTGTTCCACGGCACTGGCTATTTCTC 476
Query 597 TTTATGCGCTGGTTATTGCATC-GGAGTGCATAAACCACAGAAGAGAGTGGCTTCAAGCT 655
||||||| | | ||||||||| || |||||||| ||||| || | ||| ||||| || |
Sbjct 477 TTTATGCTCCGAATATTGCATCAGG-GTGCATAACCCACAAAACACAGTAGCTTCGAGTT 535
Query 656 CTGAGCCATTTGTGATTCCCGAGCTCCCTGGGAACATTGTGATAACTGAAGAACAGATCA 715
|||||||||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 536 GTGAGCCATTTGTGATTCCTGATCTCCCTGGGAACATAGTGATAACAAAAGAACAGATCG 595
Query 716 TAGATGGCGATGGAGAATCCGACATGGGAAAGTTTATGACTGAAGTTAGGGAATCGGAAG 775
||| | || | |||| || ||||| |||||||||| ||| || | ||||| || |
Sbjct 596 CAGACCGTGACGAAGAAAGAGAGATGGGGAAGTTTATGATTGAGGTCAAAGAATCTGATG 655
Query 776 TGAAGAGCTCAGGAGTTGTTTTGAATAG-TTTCTACGAGCTAGAACATGATTACGCCGAT 834
|||||||||| || ||| || |||| || ||| |||||||| |||| |||||||||||||
Sbjct 656 TGAAGAGCTCTGGTGTTATTGTGAACAGCTTT-TACGAGCTTGAACCTGATTACGCCGAT 714
Query 835 TTTTACAAAAGTTGT-GTACAAAAGAGAGCGTGGCATATCGGTCCGCTATCGGTTTACAA 893
|||||||| ||| || ||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 715 TTTTACAAGAGT-GTTGTAGTGAAGAGAGCATGGCATATCGGTCCGCTCTCGGTTTACAA 773
Query 894 CAG-GGGATTTGAGGAGAAGGCTGAGAGAGGAAAGAAAGCGAA-CATTGATGAGGCTGAA 951
||| ||| |||||||||||||||||||||||||||||||| || ||||||||| | ||||
Sbjct 774 CAGAGGG-TTTGAGGAGAAGGCTGAGAGAGGAAAGAAAGC-AAGCATTGATGAAGTTGAA 831
Query 952 TGCCTCAAATGGCTTGACTCCAAGAAACCAAATTCAGTCATTTATGTTTCCTTTGGGAGC 1011
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 832 TGCCTCAAATGGCTTGACTCCAAGAAACCAGATTCAGTCATTTACATTTCCTTTGGGAGC 891
Query 1012 GTGGCTTTCTTCAAGAATGAACAGTTATTCGAGATCGCTGCAGGGTTAGAAGCTTCCGGT 1071
||||||| ||||||||| || ||| ||||||||||||||||||| |||||| |||| ||
Sbjct 892 GTGGCTTGCTTCAAGAACGAGCAGCTATTCGAGATCGCTGCAGGATTAGAAACTTCTGG- 950
Query 1072 A-CAAGTTTCATTTGGGTTGTTAGGAAAACCAAAG--A-TGATAGAGAAGAATGGTTACC 1127
| ||| ||| || |||||||||||||||| || || | ||| | |||||||||||||||
Sbjct 951 AGCAAATTTTATCTGGGTTGTTAGGAAAAACACAGGTAATGACAAAGAAGAATGGTTACC 1010
Query 1128 AGAAGGGTTCGAAGAGAGGGTGAAAGGGAAAGGTATGATAATAAGAGGATGGGCACCACA 1187
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1011 AGAAGGGTTTGAAGAGAGGGTGAAAGGGAAAGGGATGATAATAAGAGGATGGGCACCACA 1070
Query 1188 GGTGCTGATACTTGACCACCAAGCAACCGGTGGGTTTGTGACCCATTGCGGCTGGAACTC 1247
||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1071 GGTACTGATACTAGACCATCAAGCAACCGGTGGGTTCGTGACTCATTGCGGCTGGAACTC 1130
Query 1248 GCTTCTTGAAGGAGTGGCTGCAGGGCTACCAATGGTGACATGGCCTGTAGGAGCGGAGCA 1307
||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||
Sbjct 1131 GCTTCTTGAAGGAGTGGCTGCTGGGCTACCGATGGTGACATGGCCGGTTGGAGCGGAGCA 1190
Query 1308 ATTCTACAATGAGAAATTGGTTACGCAAGTGCTCAGAACAGGAGTGAGCGTGGGAGCGAG 1367
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1191 ATTCTACAACGAGAAATTGGTTACGCAAGTTCTTAGAACAGGAGTGAGCGTGGGAGCTAA 1250
Query 1368 CAAGCATATGAAAGTTATGATGGGAGATTTCATTAGCAGAGAGAAAGTGGATAAAGCGGT 1427
|||||| | || | | | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1251 AAAGCATGT-AAGGAC-T-ACGGGAGATTTCATTAGCAGAGAGAAAGTGGATAAAGCAGT 1307
Query 1428 GAGGGAGGTTTTGGCTGGGGAAGCAG-CAGAGGAGAGGCGG-AGACGGGCAAAGAAGCTA 1485
||||||||| |||| |||||||| || | || ||||||||| || ||||||||||||||
Sbjct 1308 GAGGGAGGTGTTGGTTGGGGAAG-AGGCGGATGAGAGGCGGGAG-CGGGCAAAGAAGCTG 1365
Query 1486 GCGGCGATGGCTAAAGCTGCCGTGGAAGAAGGAGGGTCTTCCTTCAACGATCTAAACAGC 1545
|| | |||||||| ||||||||||||||||||||||||||| || || || ||||||| |
Sbjct 1366 GCAGAGATGGCTACAGCTGCCGTGGAAGAAGGAGGGTCTTCTTTTAATGAGCTAAACAAC 1425
Query 1546 TTCATGGAAGAGTTTA 1561
||||| ||||||||||
Sbjct 1426 TTCATAGAAGAGTTTA 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5