BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34220.1 Length=2561 Score E Sequences producing significant alignments: (Bits) Value Ahg491249 jgi|Araly1|491249|fgenesh2_kg.7__682__AT4G34220.1 3965 0.0 > Ahg491249 jgi|Araly1|491249|fgenesh2_kg.7__682__AT4G34220.1 Length=2492 Score = 3965 bits (2147), Expect = 0.0 Identities = 2385/2500 (95%), Gaps = 15/2500 (1%) Strand=Plus/Plus Query 1 TGCTCCACTATCTCATAGATTTGGTGACCAGAACAACTTATCTCTTGAGTGGTTCAACCT 60 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1 TGCTCCACTATCTCATAGATTTGGTTACCAGAACAACTTATCACTTGAGTGGTTCAACCT 60 Query 61 CTATCTCTCTCTCTTTCTGCCATGAAAATGCAAAGCCAAATGTAATA-GTTAGAGAGGGA 119 ||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 61 CTA--TCTCTCTCTTTCTGCTATGAAAATGCATAGCCAAATGTAATACTTTAGAGAGGGA 118 Query 120 GAAACCAAGAACTGAAAGACCATGACTTCCAACAGAAGCAACCTCCTGTTCTCATTAGTC 179 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 119 GATACCAAGAACTGAAAAACCATGACTTCCAACAGAAGCAACCTCCTGTTCTCATTAGCC 178 Query 180 CTCTTCCACTTTCTTTTTGTCCCCACACAACTCCAAGCTCTTAACACTGATGGTGTTCTT 239 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CTCTTCCACCTTCTTTTTGTCCCCACACAACTCCAAGCTCTTAACACTGATGGTGTTCTT 238 Query 240 CTGCTTACTTTCAAATACTCCATCCTCACTGACCCTCTCTCTGTTCTACGCAATTGGAAC 299 |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| Sbjct 239 CTGCTTACTTTCAAATACTCCATCCTCAGTGACCCTCTCTTTGTTCTACGCAACTGGAAC 298 Query 300 TATGATGATGCAACACCATGCTTGTGGACAGGTGTCACATGTACAGAGCTTGGGAAGCCT 359 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 299 TATGATGATGCAACACCATGCTTGTGGACAGGTGTCACTTGTACAGAGCTTGGGAAGCCT 358 Query 360 AACACACCAGACATGTTCAGAGTCACAAGCTTGGTACTTCCCAACAAACACCTTTTGGGT 419 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 359 AACACACCAGACATGTTCAGAGTCACAAGCTTGGTACTTCCCAACAAACATCTTTTGGGT 418 Query 420 TCCATCACTCCGGACTTGTTCTCGATTCCATATCTAAGGATCTTGGATCTGTCTAGCAAT 479 ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 419 TCCATCACTCCGGACTTGTTCTCGATTCCCCATCTAAGGATCTTGGATCTGTCCAGCAAT 478 Query 480 TTCTTCAACGGGTCACTCCCGGACTCGGTGTTCAACGCCACTGAGCTTCAGAG-TATCTC 538 |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 479 TTCTTCAACGGGTCACTCCCTGACTCGGTGTTCAACGCCACTGAGCTTCA-AGTTATCTC 537 Query 539 CCTTGGAAGCAACAATCTCTCTGGTGATTTGCCCAAGAGTGTCAACAGTGTGACTAATCT 598 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 538 CCTTGGAAGCAACAATATCTCTGGTGATTTGCCCAAGAGTGTCAACAGTGTGATTAATCT 597 Query 599 CCAGCTCTTGAATCTCTCAGCTAACGCATTTACTGGCGAAATTCCGCTCAACATCTCACT 658 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 598 CCAGCTCTTGAATCTCTCAGCTAACGCATTTACTGGAGAAATTCCGCTCAACATCTCACT 657 Query 659 TCTGAAGAATCTAACGGTCGTTTCCTTGTCAAAAAACACCTTTTCAGGTGATATTCCAAG 718 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 658 TCTGAAGAATCTAACGGTCGTTTCCTTGTCAAAGAACTCCTTTTCAGGTGATATTCCAAG 717 Query 719 TGGTTTCGAAGCAGCAC-AGATTCTTGATCTTTCTTCAAATCTTCTCAACGGCTCTCTTC 777 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 718 TGGTTTCGAAGCAGTACAAG-TTCTTGATCTTTCTTCAAATCTTCTCAACGGCTCTCTTC 776 Query 778 CCAAGGATTTGGGAGGAAAAAGCCTGCATTACTTGAACTTATCACACAACAAAGTCCTCG 837 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 777 CCAAGGATTTGGGAGGAAAAAGTCTGCATTACTTGAACTTATCACACAACAAAGTCCTCG 836 Query 838 GCGAGATTTCTCCAAATTTTGCAGAGAAGTTTCCAGCAAATGCCACAGTCGATCTCTCCT 897 |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 837 GCGAGATTTCTCCAGGTTTTGCAGAGAAGTTTCCAGCTAATGCCACAGTCGATCTCTCCT 896 Query 898 TTAACAACCTCACAGGCCCAATCCCAAGTTCCCTTTCTTTACTTAACCAAAAGGCTGAGT 957 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 897 ATAACAACCTCACAGGCCCAATCCCAAGTTCCCTTTCTTTACTTAACCAAAAGGCTGAAT 956 Query 958 CTTTTTCCGGTAACCAAGAGCTT-TGTGGGAAGCCATTGAAGATCCTTTGTTCAATTCCT 1016 ||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||| Sbjct 957 CTTTTTCCGGTAACCAAGA-CTTGTGTGGGAAACCATTGAAGATCCTTTGCTCAATTCCT 1015 Query 1017 TCCACTCTTTCAAACCCTCCAAATATCTCTGAAACTACTTCACCAGCAATAGCAGTTAAA 1076 |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| Sbjct 1016 TCCACTCTTTCAAACCCTCCAAATGTCTCTGACACTACTTCACCGGCAATAGCAGTTAAA 1075 Query 1077 CCAAGAAGTACAGCTCCAATAAACCCTTTGACAGAAAAACCAAATCAGACAGGAAAAAGC 1136 |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 1076 CCAAGAAGCACAGCTCCAATAAACCCTTTGACAGAGTCACCAAGTCAGACAGCAAAAAGT 1135 Query 1137 AAGCTAAAGCCAAGCACCATTGCCGCAATCACAGTTGCAGATATAGTTGGTCTAGCTTTC 1196 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1136 AAGCTAAAGCCAAGCACCATTGCCGCAATCACAGTAGCAGATATAGTTGGTCTAGCTTTC 1195 Query 1197 ATTGGTCTACTCGTGCTCTACGTATACCAAGTCAGGAAACGCAGAAGGTACCCAGAATCT 1256 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1196 ATTGGTCTACTCGTGCTATACGTATACCAGGTCAGGAAACGCAGAAGGTACCCAGAATCC 1255 Query 1257 AGCAAATTTAGCTTCTTCAAGTTCTGTCTGGAGAAAAACGAAGCCAAGAAATCGAAACCA 1316 |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1256 AGCAGATTCAGCTTCTTCAAATTCTGTCTGGAGAAAAACGAAGCCAAGAAATCGAAACCA 1315 Query 1317 AGCACCACTGAGGTCACAGTCCCAGAATCACCAGAGGCCAAAACGACATGCGGTTCATGC 1376 ||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 1316 AGCGCCACGGAGGTCACAGTCCCAGAATCACCAGAGGCAAAAACGGCATGCGGTTCGTGC 1375 Query 1377 ATTATCTTGACCGGAGGAAGGTACGACGAGACATCGACATCAGAGAGCGACGTAGAGAAT 1436 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1376 ATAATCTTGACCGGAGGAAGGTACGACGAGACATCGACATCAGAGAGCGATGTAGAGAAT 1435 Query 1437 CAACAAACCGTTCAGGCATTCACTCGAACAGATGGTGGGCAACTGAAGCAGAGCTCCCAA 1496 || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1436 CAGCAAACCGTTCAGGCATTCAGTCGAACAGATGGTGGGCAACTGAAACAGAGCTCCCAA 1495 Query 1497 ACTCAATTGGTTACAGTCGACGGCGAGACTCGGCTAGATCTAGACACTCTGCTAAAGGCA 1556 |||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1496 ACTCAACTAGTTACAGTCGACGGCGAGACTCGGCTAGATCTAGATACTCTACTAAAGGCA 1555 Query 1557 TCTGCTTACATATTGGGAACCACCGGAACCGGGATCGTGTATAAGGCGGTGCTGGAGAAC 1616 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1556 TCTGCTTATATATTGGGAACCACTGGAACCGGGATCGTGTATAAGGCGGTGCTGGAGAAC 1615 Query 1617 GGCACGGCATTCGCGGTGAGGCGGATCGAGACGGAGAGCTGTGCGGCTGCGAAACCCAAG 1676 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1616 GGCACGGCATTCGCGGTGAGGCGGATCGAGACGGAGAGCTGTGCGGCTGTGAAACCTAAG 1675 Query 1677 GAATTCGAGAGGGAGGTTCGTGCCATCGCTAAGCTTCGTCACCCAAATCTCGTCAGAATT 1736 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1676 GAATTCGAAAGGGAGGTTCGTGCCATCGCTAAGCTTCGACACCCAAATCTCGTCAGAATT 1735 Query 1737 CGTGGGTTCTGCTGGGGAGACGACGAGAAACTTCTCATTTCCGATTATGTTCCCAATGGC 1796 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 CGTGGGTTCTGTTGGGGAGACGACGAGAAACTTCTCATTTCCGATTATGTTCCCAATGGC 1795 Query 1797 AGCCTCCTCTGTTTCTTCACCGCCACTAAGGCAAGCTCAAGCTCATCTTCTTCGTCGTCA 1856 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1796 AGCCTCCTCTGTTTCTTCACCGCCACTAAGGCAAGCTCAAGCTCGTCTTCTTCGTCGTCA 1855 Query 1857 TTACAAAACCCTCTTACTTTTGA-AGCACGGCTCAAGATAGCAAGAGGAATGGCTAGAGG 1915 |||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 1856 TTACAAAACCCTCTTAGTTTTGAGA-CACGGCTCAAGATAGCAAGAGGAATGGCTAGAGG 1914 Query 1916 ACTATCTTACATCAATGAGAAGAAACAAGTGCACGGTAACATCAAGCCCAATAACATTCT 1975 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1915 ACTATCTTACATCAATGAGAAGAAACACGTGCACGGTAACATCAAGCCCAATAACATTCT 1974 Query 1976 CTTGAACGCTGAGAATGAGCCCATCATCACCGATTTAGGGCTAGACCGCCTCATGACACC 2035 | |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 1975 CCTGAACGTTGAGAATGAGCCCATCATCACCGATCTAGGGCTAGATCGCCTCATGACACA 2034 Query 2036 AGCGCGTGAATCTCACACCACTGGACCAACTTCGAGCTCACCGTACCAGCCACCGGAATG 2095 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2035 AGCGCGTGAGTCTCGCACCACTGGACCAACTTCGAGCTCACCGTACCAGCCACCGGAATG 2094 Query 2096 GTCCACAAGCCTGAAACCAAACCCTAAATGGGACGTTTACTCCTTTGGCGTCATACTTTT 2155 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 2095 GTCCACAAGCCTGAAACCAAACCCTAAATGGGACGTTTATTCCTTTGGAGTCATACTTTT 2154 Query 2156 AGAACTTCTCACAAGCAAAGTGTTCTCGGTAGATCATGATATAGATCAGTTCTCAAACTT 2215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2155 AGAACTTCTCACAAGCAAAGTGTTCTCGGTAGATCATGATATAGATCAGTTCTCAAACTT 2214 Query 2216 ATCCGACTCTGCAGCGGAAGAGAATGGCCGGTTCTTGAGGTTAATCGACGGTGCAATTAG 2275 | ||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2215 AACCGGTTCTGAAGCAGAAGAGAATGGCCGGTTCTTGAGGTTGATCGACGGTGCAATTAG 2274 Query 2276 GAGTGATGTCGCTCGCCATGAGGATGCTGCAATGGCGTGCTTTAGGTTAGGGATTGAATG 2335 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2275 GAGCGATGTGGCTCGCCATGAGGATGCTGCAATGGCGTGCTTTAGGTTAGGGATTGAATG 2334 Query 2336 TGTCTCTTCCTTGCCTCAGAAGCGACCATCCATGAAAGAATTGGTGCAAGTGTTGGAGAA 2395 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2335 TGTCTCTTCCTTGCCTCAGAAGCGACCGCCCATGAAAGAATTGGTGCAAGTGTTGGAGAA 2394 Query 2396 AATTTGTGTTTTAGTTTGATTTCTTAATTCGTATAGCCTAAGT-CGTTTTGGCAATATAG 2454 ||| ||||||||||||||| ||||||| ||||| ||| || | |||||||||||||||| Sbjct 2395 AATGTGTGTTTTAGTTTGAGTTCTTAAATCGTA--GCCCAAATTCGTTTTGGCAATATAG 2452 Query 2455 AAAGTT-ATGTGTTATGTATGTTTTAGATGTGTTGCTTAA 2493 ||||| || |||||||||||||||||||||||||| ||| Sbjct 2453 AAAGTGGATTTGTTATGTATGTTTTAGATGTGTTGCATAA 2492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96558771075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5