BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34240.1 Length=2025 Score E Sequences producing significant alignments: (Bits) Value Ahg944483 jgi|Araly1|944483|scaffold_700712.1 2617 0.0 > Ahg944483 jgi|Araly1|944483|scaffold_700712.1 Length=1687 Score = 2617 bits (1417), Expect = 0.0 Identities = 1603/1694 (95%), Gaps = 8/1694 (0%) Strand=Plus/Plus Query 162 TTTTTAACTGAACCCAAGTCATGACGAAGCTTCTAGAGATTAATCATATTCAAACCCTTT 221 |||||||||||||||||||||||||||||| ||||||||| |||| | | |||||| Sbjct 1 TTTTTAACTGAACCCAAGTCATGACGAAGCCTCTAGAGATGAATC--A-T---GCCCTTT 54 Query 222 GTTTTGCCAAGGGTTTTTCTCCTGCCAGATTAAATGTTGCAACTTCACCTTTTCGGATAT 281 ||||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||| Sbjct 55 GTTTTGCCAAGGGTTTTTCTCGTACCAGATTAAATGTTGCAACTTCACCCTTTCTGATAT 114 Query 282 CTCGTCGTGGTGGTGGTGGATATTGCAGCAATGCTTGTATCCCTTATCGGTTGAAATTTA 341 ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 115 CTCGTGGTGGTGGTGGTGGATATTGCAGCAATACTTGTATCCCTTATCGCTTGAAATTTA 174 Query 342 CTTGTTATGCAACACTATCTGCTGTGGTAAAGGAGCAAGCATCAGACTTTAG-TGGAAAA 400 |||| ||||||||||||||||||||||||||||||||| |||||| |||| | ||||||| Sbjct 175 CTTGCTATGCAACACTATCTGCTGTGGTAAAGGAGCAAACATCAG-CTTTTGATGGAAAA 233 Query 401 GAAGCAGCTTTGCTTGTAGATGAGCTCAGAAGCAACTTCAACTCTGGCAGAACGAAGAGC 460 ||||||||||||||||| |||||||||||||||||||| ||| | || ||||| |||||| Sbjct 234 GAAGCAGCTTTGCTTGTTGATGAGCTCAGAAGCAACTTTAACACCGGTAGAACAAAGAGC 293 Query 461 TACGAGTGGAGAATTTCTCAGCTTCAAAACATTGCTAGGATGATTGATGAGAAGGAGAAA 520 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 294 TATGAGTGGAGAATTTCTCAGCTTCAAAGCATTGCTAGGATGATTGATGAGAAGGAGAAA 353 Query 521 TGCATCACCGAAGCTTTGTATCAAGATCTTTCTAAGCCTGAGCTTGAAGCTTTTCTAGCT 580 || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 354 TGTATCACCGAAGCTTTGTATCAAGACCTTTCCAAGCCTGAGCTTGAAGCTTTTCTAGCT 413 Query 581 GAGATTTCGAATACAAAATCATCCTGTATGCTTGCAATCAAAGAGTTAAAGAACTGGATG 640 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 414 GAGATTTCGAATACAAAATCATCCTGTATGCTTGCAATCAAAGAGTTGAAGAATTGGATG 473 Query 641 GCTCCAGAAACGGTCAAAACTTCTGTGACAACATTTCCCTCGTCTGCACAAATAGTCTCA 700 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 474 GCTCCAGAAACGGTCAAAACTTCTGTGACGACATTTCCCTCGTCTGCAGAAATAGTCTCA 533 Query 701 GAACCGCTTGGAGTTGTTTTGGTTATTTCAGCCTGGAATTTCCCTTTCTTATTGTCTGTC 760 || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 534 GAGCCGCTAGGAGTTGTTTTGGTTATCTCAGCCTGGAATTTCCCTTTCTTATTGTCTGTC 593 Query 761 GAGCCAGTCATTGGAGCTATTGCAGCTGGTAATGCGGTTGTGCTAAAACCTTCTGAAATT 820 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 594 GAGCCAGTCATTGGAGCTATTGCAGCTGGTAATGCGGTTGTGCTTAAACCTTCTGAAATC 653 Query 821 GCTCCAGCAGCATCTTCTCTTTTAGCAAAGTTGTTTAGTGAATACTTGGACAATACAACA 880 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 654 GCTCCAGCAGCATCTTCTCTTTTAGCAAAGTTGTTCAGTGAATACTTGGACAATACAACA 713 Query 881 ATCAGAGTTATCGAGGGAGGAGTCCCTGAAACAACGGCACTACTGGATCAAAAATGGGAC 940 ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 714 ATCCGAGTTATAGAGGGAGGAGTCCCTGAAACAACAGCACTACTGGATCAAAAATGGGAA 773 Query 941 AAGATCTTTTTCACTGGTGGAGCAAGAGTTGCTCGCATTATAATGGCTGCGGCTGCGAGA 1000 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 774 AAGATCTTCTTCACTGGTGGAGCAAGAGTTGCTCGCATTATAATGGCTGCAGCTGCGAAA 833 Query 1001 AATCTTACTCCAGTGGTTCTCGAACTTGGTGGGAAGTGCCCAGCTCTTGTTGATTCAGAT 1060 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 834 AATCTTACTCCAGTGGTTCTCGAACTTGGTGGAAAGTGCCCAGCTCTTGTTGATTCAGAT 893 Query 1061 GTTAATCTACAAGTGGCTGCTAGGAGGATCATTGCAGGGAAATGGGCTTGTAACAGTGGA 1120 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 894 GTTAATCTACAAGTAGCTGCTAGGAGGATCATAGCAGGGAAATGGGCTTGTAACAGTGGA 953 Query 1121 CAGGCTTGCATTGGTGTTGATTACGTGATCACAACAAAGGATTTTGCATCAAAATTGATA 1180 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 954 CAGGCTTGCATTGGCGTCGATTACGTGATCACAACAAAGGATTTTGCATCAAAATTGATA 1013 Query 1181 GATGCTCTGAAGACTGAACTGGAGACATTTTTTGGGCAAAACGCATTAGAATCAAAGGAC 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 GATGCTCTGAAGACTGAACTGGAGACATTTTTTGGGCAAAACGCATTAGAATCAAAGGAC 1073 Query 1241 CTGTCGCGGATTGTGAACTCTTTCCACTTCAAAAGGTTGGAAAGTATGTTAAAAGAGAAT 1300 ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 1074 CTGTCACGGATTGTGAACTCTTTCCACTTCAAACGGTTGGAGAGTATGTTAAAAGAGAAT 1133 Query 1301 GGAGTAGCCAACAAAATTGTTCATGGTGGCCGAATAACCGAAGATAAACTTAAAATATCA 1360 ||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||| Sbjct 1134 GGAGTCGCCAACAAAATTGTTCATGGTGGCCAAACAACCGAAGATAAACTAAAAATATCT 1193 Query 1361 CCAACAATACTACTGGATGTGCCTGAAGCATCTTCCATGATGCAGGAAGAGATATTTGGA 1420 ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1194 CCAACGATTCTACTGGATGTGCCAGAAGCATCTTCCATGATGCAGGAAGAGATATTTGGA 1253 Query 1421 CCTTTACTTCCCATAATTACGGTACAAAAGATTGAAGATGGCTTTCAGGTTATACGTTCA 1480 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1254 CCTTTACTTCCCGTAATTACGGTGCAAAAGATTGAAGATGGCTTTCAGGTTATACGTTCA 1313 Query 1481 AAGCCAAAGCCTTTAGCAGCGTATCTCTTCACAAACAACAAAGAGTTGGAGAAACAATTC 1540 |||||||||||| ||||||||||||| |||||||||| || ||||||| ||||||||||| Sbjct 1314 AAGCCAAAGCCTCTAGCAGCGTATCTGTTCACAAACAGCACAGAGTTGCAGAAACAATTC 1373 Query 1541 GTGCAGGACGTATCAGCAGGAGGAATTACCATCAATGACACTGTCTTACACGTGACTGTA 1600 |||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1374 GTGCAGAACGTATCTGCAGGAGGAATGACCATCAATGACACTGTCTTACACGTAACTGTA 1433 Query 1601 AAAGATCTGCCATTTGGTGGGGTTGGGGAGAGTGGGATCGGTGCTTACCATGGGAAATTC 1660 |||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 1434 AAAGATTTGCCATTTGGTGGGGTAGGGGAGAGCGGGATCGGTGCTTACCACGGGAAATTC 1493 Query 1661 TCGTATGAGACGTTTAGCCATAAGAAAGGAGTTCTTTACCGGAGCTTTTCAGGGGACGCG 1720 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1494 TCGTATGAGACGTTTAGCCATAAGAAAGGAGTACTTTACCGGAGCTTTTCAGGGGACGCG 1553 Query 1721 GATCTTAGATATCCTCCTTACACACCAAAAAAGAAGATGGTGCTTAAGGCTTTGCTCTCT 1780 ||||| |||||||||||||||||||| |||||||||||||| || || |||||| ||||| Sbjct 1554 GATCTAAGATATCCTCCTTACACACCCAAAAAGAAGATGGTTCTGAAAGCTTTGATCTCT 1613 Query 1781 TCAAACATATTTGCTGCCATTTTGGCTTTCTTTGGGTTCTCTAAAGACTCATGATCACAT 1840 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||| Sbjct 1614 TCAAACATATTTGCTGCTATCTTGGCTTTCTTTGGGTTATCTAAAGAGTCATGATCACAT 1673 Query 1841 GTTATAATCACTGA 1854 |||||||||||||| Sbjct 1674 GTTATAATCACTGA 1687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76142399755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5